BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2073758	170 (0.890)	17 (0.110)	9/136	NT	9.4%	intergenic (+16/+41)	USA300HOU_RS10455/USA300HOU_RS10460	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2073772	182 (1.130)	17 (0.110)	9/136	NT	9.4%	intergenic (+30/+27)	USA300HOU_RS10455/USA300HOU_RS10460	hypothetical protein/hypothetical protein

Only 100 of 269 total aligned reads displayed.

CCTTAATATCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTCCCAACT  >  USA300TCH1516_ALE/2073682‑2073862

ccTTAATATCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTc                                                                                            <  2:911987/91‑1 (MQ=255)

ccTTAATATCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTc                                                                                            <  1:2193388/91‑1 (MQ=255)

 cTTAATATCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCc                                                                                           <  2:769003‑M2/91‑2 (MQ=255)

 cTTAATATCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCc                                                                                           >  2:3729556‑M2/1‑90 (MQ=255)

  ttAATATCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCct                                                                                          >  1:2179998‑M2/1‑89 (MQ=255)

  ttAATATCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCct                                                                                          <  1:1424671‑M2/91‑3 (MQ=255)

     atatCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCctaat                                                                                       <  1:3221551‑M2/91‑6 (MQ=255)

     atatCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCctaat                                                                                       <  1:347595‑M2/91‑6 (MQ=255)

     atatCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCctaat                                                                                       <  2:1099031‑M2/91‑6 (MQ=255)

     atatCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCctaat                                                                                       <  1:1270755‑M2/91‑6 (MQ=255)

       atCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCctaatat                                                                                     <  2:3157742‑M2/91‑8 (MQ=255)

             cactTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGc                                                                               <  1:735922/91‑1 (MQ=255)

               ctTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCtt                                                                             <  2:1374209/91‑1 (MQ=255)

               ctTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCtt                                                                             <  2:1006426/91‑1 (MQ=255)

                tttACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTa                                                                            <  1:1421660/91‑1 (MQ=255)

                tttACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTa                                                                            >  2:481097/1‑91 (MQ=255)

                 ttACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATATCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTAc                                                                           >  2:3012533/1‑91 (MQ=255)

                 ttACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTAc                                                                           >  1:251832/1‑91 (MQ=255)

                 ttACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTAc                                                                           >  1:1818758/1‑91 (MQ=255)

                 ttACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTAc                                                                           <  2:2337798/91‑1 (MQ=255)

                  tACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACa                                                                          >  1:3650617/1‑91 (MQ=255)

                  tACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACa                                                                          <  2:3565654/91‑1 (MQ=255)

                  tACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACa                                                                          <  1:97438/91‑1 (MQ=255)

                   aCTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACAt                                                                         >  1:3373693/1‑91 (MQ=255)

                   aCTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGATTACAt                                                                         >  2:609857/1‑91 (MQ=255)

                    cTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATc                                                                        <  2:2275238/91‑1 (MQ=255)

                    cTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATc                                                                        >  2:550046/1‑91 (MQ=255)

                     tGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATcc                                                                       >  1:123728/1‑91 (MQ=255)

                     tGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATcc                                                                       <  1:1173066/91‑1 (MQ=255)

                      ggCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCt                                                                      <  1:120511/91‑1 (MQ=255)

                       gCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCtt                                                                     <  2:707799/91‑1 (MQ=255)

                       gCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCtt                                                                     >  1:1870812/1‑91 (MQ=255)

                             taGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCtttattta                                                               >  1:1032550/1‑91 (MQ=255)

                             taGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCtttattta                                                               <  2:680136/91‑1 (MQ=255)

                              aGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTttatttat                                                              >  2:1654338/1‑91 (MQ=255)

                                aTACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTc                                                            >  1:1846646/1‑91 (MQ=255)

                                     gACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACtt                                                       >  2:457562/1‑91 (MQ=255)

                                      aCTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACttt                                                      >  2:1242136/1‑91 (MQ=255)

                                      aCTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACttt                                                      <  1:578650/91‑1 (MQ=255)

                                       cTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTg                                                     <  1:2133890/91‑1 (MQ=255)

                                       cTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTg                                                     >  2:3858637/1‑91 (MQ=255)

                                       cTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTg                                                     >  1:2081804/1‑91 (MQ=255)

                                          aaCTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGata                                                  >  2:1637829/1‑91 (MQ=255)

                                           aCTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGatat                                                 >  1:999262/1‑91 (MQ=255)

                                           aCTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGatat                                                 >  2:2837411/1‑91 (MQ=255)

                                            cTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATAtt                                                >  1:1018988/1‑91 (MQ=255)

                                             ttttGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTa                                               <  1:148637/91‑1 (MQ=255)

                                               ttGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTAcc                                             >  1:129294/1‑91 (MQ=255)

                                               ttGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTAcc                                             <  1:3269918/91‑1 (MQ=255)

                                                tGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCa                                            <  1:1706875/91‑1 (MQ=255)

                                                 gCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCAt                                           <  1:273773/91‑1 (MQ=255)

                                                  ccAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATc                                          <  1:474666/91‑1 (MQ=255)

                                                   caacaaATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCa                                         >  1:1566635/1‑91 (MQ=255)

                                                    aacaaATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCaa                                        <  2:2666609/91‑1 (MQ=255)

                                                    aacaaATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCaa                                        >  1:2433319/1‑91 (MQ=255)

                                                        aataaataACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGt                                    <  2:1314170/91‑1 (MQ=255)

                                                        aataaataACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGt                                    <  2:3468873/91‑1 (MQ=255)

                                                         ataaataaCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGta                                   <  1:2723047/91‑1 (MQ=255)

                                                          taaataaCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGtat                                  >  2:2045248/1‑91 (MQ=255)

                                                          taaataaCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACCTTGATATTACCATCAATCGtat                                  <  2:1387945/91‑1 (MQ=255)

                                                           aaataaCACCGATATTAGAGAAATTATGCTTCctaatatcggtgttatttatttgttggcaaaagttaagtcggtatctatattgccagta                                 <  2:3243260‑M2/91‑60 (MQ=255)

                                                           aaataaCACCGATATTAGAGAAATTATGCTTCctaatatcggtgttatttatttgttggcaaaagttaagtcggtatctatattgccagta                                 <  1:3756912‑M2/91‑60 (MQ=255)

                                                           aaataaCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGtata                                 >  1:2684731/1‑91 (MQ=255)

                                                            aataaCACCGATATTAGAGAAATTATGCTTCctaatatcggtgttatttatttgttggcaaaagttaagtcggtatctatattgccagtaa                                <  1:3851294‑M2/91‑61 (MQ=255)

                                                             ataaCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATaaa                               >  2:3282685/1‑91 (MQ=255)

                                                             ataaCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATaaa                               >  2:367897/1‑91 (MQ=255)

                                                             ataaCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATaaa                               <  1:1049236/91‑1 (MQ=255)

                                                              taaCACCGATATTAGAGAAATTATGCTTCctaatatcggtgttatttatttgttggcaaaagttaagtcggtatctatattgccagtaaag                              <  1:3023887‑M2/91‑63 (MQ=255)

                                                              taaCACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATaaaa                              <  2:1514746/91‑1 (MQ=255)

                                                                acacCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATTAATCGTATAAAAtt                            >  2:239588/1‑91 (MQ=255)

                                                                 cacCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTGTTTATTCAACTTTGATATTACCATCAATCGTATAAAATTc                           <  2:3195989/91‑1 (MQ=255)

                                                                   ccGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTa                         <  1:843846/91‑1 (MQ=255)

                                                                   ccGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTa                         <  2:1725708/91‑1 (MQ=255)

                                                                      atatTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTaaaa                      <  2:19996/91‑1 (MQ=255)

                                                                      atatTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTaaaa                      >  2:3080074/1‑91 (MQ=255)

                                                                      atatTAGAGAAATTATGCTTCCTAATATCGGTGATTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTaaaa                      <  1:3444470/91‑1 (MQ=255)

                                                                       tatTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAAc                     >  1:766135/1‑91 (MQ=255)

                                                                        atTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACa                    >  1:2009933/1‑91 (MQ=255)

                                                                        atTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACa                    >  1:2010545/1‑91 (MQ=255)

                                                                         ttAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACAt                   >  1:2274088/1‑91 (MQ=255)

                                                                          tAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACAtt                  <  1:2241728/91‑1 (MQ=255)

                                                                           agagAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTg                 <  2:2812325/91‑1 (MQ=255)

                                                                           agagAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTg                 >  2:111756/1‑91 (MQ=255)

                                                                            gagaAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGt                <  2:568900/91‑1 (MQ=255)

                                                                            gagaAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGt                >  2:3583366/1‑91 (MQ=255)

                                                                             agaAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTc               >  1:1233116/1‑91 (MQ=255)

                                                                              gaAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCg              <  1:2545613/91‑1 (MQ=255)

                                                                               aaaTTATGCTTCctaatatcggtgttatttatttgttggcaaaagttaagtcggtatctatattgccagtaaagtgagtgatattaaggtc             <  2:1471957‑M2/91‑80 (MQ=255)

                                                                                 aTTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCtt           <  1:1604209/91‑1 (MQ=255)

                                                                                  ttATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCttt          <  1:3533484/91‑1 (MQ=255)

                                                                                   tATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCtttt         >  1:2359304/1‑91 (MQ=255)

                                                                                    aTGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTc        >  1:1781765/1‑91 (MQ=255)

                                                                                    aTGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTc        >  2:2854473/1‑91 (MQ=255)

                                                                                    aTGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTc        >  2:1721960/1‑91 (MQ=255)

                                                                                    aTGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTc        >  2:2068196/1‑91 (MQ=255)

                                                                                     tGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTcc       <  2:1818758/91‑1 (MQ=255)

                                                                                      gCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTccc      <  2:2081804/91‑1 (MQ=255)

                                                                                        ttCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTCCCaa    >  1:616157/1‑91 (MQ=255)

                                                                                         tCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTCCCAAc   <  2:2641846/91‑1 (MQ=255)

                                                                                          ccTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTCCCAACt  >  1:69917/1‑91 (MQ=255)

CCTTAATATCACTCACTTTACTGGCAATATAGATACCGACTTAACTTTTGCCAACAAATAAATAACACCGATATTAGAGAAATTATGCTTCCTAATATCGGTGCTTACATCCTTTATTTATTCAACTTTGATATTACCATCAATCGTATAAAATTCTAAAACATTGTCGCTTTTCCCAACT  >  USA300TCH1516_ALE/2073682‑2073862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.