BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2349040	176 (0.920)	22 (0.130)	15/146	NT	11.2%	coding (915/1137 nt)	clpB_3	Chaperone protein ClpB
*	?	USA300TCH1516_ALE	= 2349060	189 (1.090)	22 (0.130)	15/146	NT	11.2%	coding (895/1137 nt)	clpB_3	Chaperone protein ClpB

Only 100 of 249 total aligned reads displayed.

TTTCTTTTTCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGAAAATACA  >  USA300TCH1516_ALE/2348970‑2349150

tttctttttcATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAAt                                                                                            >  1:3562082/1‑91 (MQ=255)

 ttCTTTTTCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATa                                                                                           <  1:1937931‑M2/91‑2 (MQ=255)

     ttttTATTTATATATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTATTacagt                                                                                       <  2:2719226‑M2/91‑6 (MQ=255)

     ttttCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATacagg                                                                                       <  1:445461‑M2/91‑6 (MQ=255)

     ttttCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATacagg                                                                                       <  2:2148592‑M2/91‑6 (MQ=255)

     ttttCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATCACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATacagg                                                                                       >  2:3488398‑M2/1‑86 (MQ=255)

      tttCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATacagga                                                                                      <  1:3727981‑M2/91‑7 (MQ=255)

       ttCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATacaggaa                                                                                     <  1:3047319‑M2/91‑8 (MQ=255)

        tCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTATTAAATTTTTATATTTAACacaggaag                                                                                    >  2:328212‑M2/1‑83 (MQ=255)

         cATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTATTAAATTTTTATATTTAACacaggaaga                                                                                   >  2:1846712‑M2/1‑82 (MQ=255)

           tttAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTa                                                                                 >  2:833665/1‑91 (MQ=255)

              agagATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTATTAAATTTTTATATTTAACacaggaagaaaagc                                                                              >  1:3232394‑M2/1‑77 (MQ=255)

               gagaTGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCt                                                                                  <  2:3588282/86‑1 (MQ=255)

               gagaTGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCt                                                                                  >  1:3588282/1‑86 (MQ=255)

               gagaTGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCt                                                                             <  1:2141952/91‑1 (MQ=255)

               gagaTGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCt                                                                             <  2:1023265/91‑1 (MQ=255)

               gagaTGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCt                                                                             <  1:2446645/91‑1 (MQ=255)

               gagaTGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCt                                                                             >  2:769474/1‑91 (MQ=255)

                 gatgatAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGAGTTAAATATAAAAATTTAATACAGGAATCTATTCTAg                                                                           <  1:3258187/91‑1 (MQ=255)

                  atgatAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGa                                                                          >  2:2647382/1‑91 (MQ=255)

                  atgatAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGa                                                                          <  1:67093/91‑1 (MQ=255)

                     atAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGaaaa                                                                       >  1:3502598/1‑91 (MQ=255)

                     atAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGaaaa                                                                       >  1:2824900/1‑91 (MQ=255)

                     atAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGaaaa                                                                       >  1:367320/1‑91 (MQ=255)

                      tAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAAt                                                                      >  2:511420/1‑91 (MQ=255)

                       aGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATa                                                                     >  1:2310050/1‑91 (MQ=255)

                         tATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATAcc                                                                   <  1:3197003/91‑1 (MQ=255)

                         tATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATAcc                                                                   >  1:2091781/1‑91 (MQ=255)

                           tttCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCgg                                                                 <  2:2810137/91‑1 (MQ=255)

                           tttCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCgg                                                                 >  1:1383554/1‑91 (MQ=255)

                             tCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGtt                                                               >  2:1371302/1‑91 (MQ=255)

                               atttaatttaTTTTCTATTACTTTCTGCTTTTCTTCCTGTATTAAATTTTTATATTTAACacaggaagaaaagcagaaagtaatagaaaat                                                             >  1:1967990‑M2/1‑60 (MQ=255)

                                tttaatttaTTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTtctc                                                            <  1:1049628/91‑1 (MQ=255)

                                     tttatttTCTATTACTTTCTGCTTTTCTTCCTGTATTAAATTTTTATATTTAACacaggaagaaaagcagaaagtaatagaaaataaatta                                                       >  1:1848273‑M2/1‑54 (MQ=255)

                                       tatttTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATAtt                                                     >  2:3309523/1‑91 (MQ=255)

                                       tatttTCTATTACTTTCTGCTTTTCTTCCTGTATTAAATTTTTATATTTAACacaggaagaaaagcagaaagtaatagaaaataaattaaa                                                     >  1:1003359‑M2/1‑52 (MQ=255)

                                         ttttCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTaa                                                   <  1:3338749/91‑1 (MQ=255)

                                         ttttCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTaa                                                   <  1:2030709/91‑1 (MQ=255)

                                          tttCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAAc                                                  <  2:2525090/91‑1 (MQ=255)

                                          tttCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAAc                                                  <  1:2258080/91‑1 (MQ=255)

                                          tttCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAAc                                                  <  1:2705026/91‑1 (MQ=255)

                                            tCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAGAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTa                                                <  2:1130805/91‑1 (MQ=255)

                                            tCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTa                                                <  1:3159953/91‑1 (MQ=255)

                                            tCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTa                                                <  1:3536227/91‑1 (MQ=255)

                                              tATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTAtt                                              >  2:1466140/1‑91 (MQ=255)

                                               aTTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTg                                             >  2:3387239/1‑91 (MQ=255)

                                                ttACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGc                                            <  1:3171257/91‑1 (MQ=255)

                                                 tACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGct                                           <  1:2665739/91‑1 (MQ=255)

                                                 tACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGct                                           <  2:1780473/91‑1 (MQ=255)

                                                 tACATTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATGTTAACTATTGct                                           <  1:2998661/91‑1 (MQ=255)

                                                  aCTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGctt                                          >  1:2645869/1‑91 (MQ=255)

                                                   cTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGcttc                                         <  1:1421480/91‑1 (MQ=255)

                                                    tttCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGcttct                                        <  2:1016161/91‑1 (MQ=255)

                                                     ttCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGcttctt                                       >  1:2910806/1‑91 (MQ=255)

                                                      tCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCttcttc                                      <  1:833665/91‑1 (MQ=255)

                                                       cTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCa                                     >  1:2308762/1‑91 (MQ=255)

                                                        tGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCaa                                    >  2:3834969/1‑91 (MQ=255)

                                                        tGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCaa                                    >  2:2765089/1‑91 (MQ=255)

                                                           ttttCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATAc                                 <  2:2223045/91‑1 (MQ=255)

                                                           ttttCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATAc                                 <  1:534062/91‑1 (MQ=255)

                                                            tttCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACt                                >  1:2735835/1‑91 (MQ=255)

                                                            tttCTTCCTGTGTTAAATATAAAAATCTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACt                                >  2:2218364/1‑91 (MQ=255)

                                                             ttcttcCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTa                               <  1:3843551/91‑1 (MQ=255)

                                                             ttcttcCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTa                               <  2:2946631/91‑1 (MQ=255)

                                                              tcttcCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTAt                              <  1:40079/91‑1 (MQ=255)

                                                              tcttcCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTAt                              <  1:2398442/91‑1 (MQ=255)

                                                               cttcCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTAtt                             >  1:1540407/1‑91 (MQ=255)

                                                                 tcCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTaa                           >  1:1133369/1‑91 (MQ=255)

                                                                  ccTGTGTTAAATATAAAAATTTAATacaggaagaaaagcagaaagtaatagaaaataaattaaatgaaatactatcatctctaaatgaaaa                          <  2:2776546‑M2/91‑67 (MQ=255)

                                                                  ccTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTaaa                          >  2:2360515/1‑91 (MQ=255)

                                                                   cTGTGTTAAATATAAAAATTTAATacaggaagaaaagcagaaagtaatagaaaataaattaaatgaaatactatcatctctaaatgaaaaa                         <  1:1897841‑M2/91‑68 (MQ=255)

                                                                   cTGTGTTAAATATAAAAATTTAATacaggaagaaaagcagaaagtaatagaaaataaattaaatgaaatactatcatctctaaatgaaaaa                         <  1:1897583‑M2/91‑68 (MQ=255)

                                                                   cTGTGTTAAATATAAAAATTTAATacaggaagaaaagcagaaagtaatagaaaataaattaaatgaaatactatcatctctaaatgaaaaa                         <  1:3415367‑M2/91‑68 (MQ=255)

                                                                   cTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTaaaa                         >  2:1190062/1‑91 (MQ=255)

                                                                    tgtgTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAAt                        <  1:3119909/91‑1 (MQ=255)

                                                                    tgtgTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAAt                        <  2:2726691/91‑1 (MQ=255)

                                                                    tgtgTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAAt                        >  1:3300904/1‑91 (MQ=255)

                                                                    tgtgTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAAt                        <  2:2496628/91‑1 (MQ=255)

                                                                    tgtgGTAAATATAAAAATTTAATACAGGGATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAAt                        <  2:2310050/91‑1 (MQ=255)

                                                                     gtgtTAAATATAAAAATTTAATacaggaagaaaagcagaaagtaatagaaaataaattaaatgaaatactatcatctctaaatgaaaaaga                       <  2:2316619‑M2/91‑70 (MQ=255)

                                                                       gtTAAATCTAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAg                     <  2:3452751/91‑1 (MQ=255)

                                                                        ttAAATATAAAAATTTAATacaggaagaaaagcagaaagtaatagaaaataaattaaatgaaatactatcatctctaaatgaaaaagaaaa                    <  1:1803284‑M2/91‑73 (MQ=255)

                                                                        ttAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGa                    >  2:1523677/1‑91 (MQ=255)

                                                                         tAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGAt                   >  2:3881124/1‑91 (MQ=255)

                                                                          aaaTATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATg                  >  1:848726/1‑91 (MQ=255)

                                                                            atatAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGtt                <  2:519125/91‑1 (MQ=255)

                                                                             tataAAAATTTAATACAGGAATCCATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTACAATTAGATGCTa               >  2:3566092/1‑91 (MQ=255)

                                                                                aaaaaTTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGaa            <  2:1694953/91‑1 (MQ=255)

                                                                                aaaaaTTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGaa            >  1:3581560/1‑91 (MQ=255)

                                                                                aaaaaTTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGaa            >  1:1703932/1‑91 (MQ=255)

                                                                                 aaaaTTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAAt           >  1:884719/1‑91 (MQ=255)

                                                                                   aaTTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGa         >  1:1828687/1‑91 (MQ=255)

                                                                                   aaTTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGa         <  1:769474/91‑1 (MQ=255)

                                                                                   aaTTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGa         >  1:1832870/1‑91 (MQ=255)

                                                                                    aTTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGaa        >  2:2023670/1‑91 (MQ=255)

                                                                                     tttAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGaaa       <  2:308270/91‑1 (MQ=255)

                                                                                     tttAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGaaa       >  1:2876788/1‑91 (MQ=255)

                                                                                      ttAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGaaaa      >  1:3538509/1‑91 (MQ=255)

                                                                                       tAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGAAAAt     >  1:942581/1‑91 (MQ=255)

                                                                                       tAATACAGGAATCGATTCTAGAAAATACCGGTTCTCCAATATTGACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGAAAAt     <  1:3880916/91‑1 (MQ=255)

TTTCTTTTTCATTTAGAGATGATAGTATTTCATTTAATTTATTTTCTATTACTTTCTGCTTTTCTTCCTGTGTTAAATATAAAAATTTAATACAGGAATCTATTCTAGAAAATACCGGTTCTCCAATATTAACTATTGCTTCTTCAATACTATTAAAATTAGATGTTAGAATGAAAATACA  >  USA300TCH1516_ALE/2348970‑2349150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.