| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2442880 | 94 (0.490) | 12 (0.070) | 9/142 | NT | 10.4% | coding (488/507 nt) | USA300HOU_RS12585 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2442902 | 123 (0.730) | coding (466/507 nt) | USA300HOU_RS12585 | hypothetical protein | |||||
Only 100 of 215 total aligned reads displayed.
AAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGTCTTTCTTTTTC > USA300TCH1516_ALE/2442812‑2442992 | agttatgataggctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa > 1:3712839‑M2/43‑91 (MQ=255) AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa < 1:402896‑M1/91‑1 (MQ=255) GTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaa > 2:3275802‑M1/1‑91 (MQ=255) TTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaaa > 1:2110204‑M1/1‑91 (MQ=255) TTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaaa > 1:3622984‑M1/1‑91 (MQ=255) ATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACa > 1:2272161‑M1/1‑91 (MQ=255) ggTTTGATGGCCTTGAGCCTATCATTACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc > 2:2477848‑M1/3‑91 (MQ=255) GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAGCATc < 2:2118444‑M1/91‑1 (MQ=255) GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc > 1:3766309‑M1/1‑91 (MQ=255) ATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCa > 2:2004004‑M1/1‑91 (MQ=255) ATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTCATGTTTCGATAACGTGGTACATCTTATCAAACAtcg < 2:3838465‑M1/91‑2 (MQ=255) taggctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCaa > 1:3020105‑M2/35‑91 (MQ=255) ttAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAt > 2:1816762/1‑91 (MQ=255) tAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAtt > 1:2883466/1‑91 (MQ=255) aaTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGCGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTc < 1:2528574/91‑1 (MQ=255) ctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCg > 1:2737072‑M2/31‑91 (MQ=255) aTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCg < 1:840132/91‑1 (MQ=255) tGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGa < 2:1780044/91‑1 (MQ=255) gCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaaa < 1:2306947/91‑1 (MQ=255) gCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaaa > 2:816062/1‑91 (MQ=255) ccTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAAGGTGGTACATCTTATCAAACATCAATTCGAAAc > 1:3295759/1‑91 (MQ=255) ttGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCa < 2:1524862/91‑1 (MQ=255) gccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCa > 1:519807‑M2/25‑91 (MQ=255) gAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATg > 2:347972/1‑91 (MQ=255) ccTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAc < 2:2892604/91‑1 (MQ=255) ccTATCATAACGTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAc < 2:920757/91‑1 (MQ=255) tATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCa > 1:2068670/1‑91 (MQ=255) tATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCa > 2:1751809/1‑91 (MQ=255) ataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGc > 2:797143‑M2/14‑91 (MQ=255) ataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGc < 1:2309221‑M2/78‑1 (MQ=255) taacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGca > 2:2886493‑M2/13‑91 (MQ=255) acttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatc > 2:3422294‑M2/11‑91 (MQ=255) acttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatc > 1:2276128‑M2/11‑91 (MQ=255) tccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATg < 2:1536388‑M2/84‑1 (MQ=255) ccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGa < 2:2311071‑M2/85‑1 (MQ=255) ccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGa < 2:1003793‑M2/85‑1 (MQ=255) ccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGa < 1:605290‑M2/85‑1 (MQ=255) cttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGat > 2:1336870‑M2/6‑91 (MQ=255) ttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGata < 2:2459673‑M2/87‑1 (MQ=255) ttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGata < 1:2985748‑M2/87‑1 (MQ=255) tATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTc < 2:2355932‑M2/90‑1 (MQ=255) aTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttct < 2:1863279/91‑1 (MQ=255) aTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttct > 1:1725967/1‑91 (MQ=255) aTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttct < 2:1709425/91‑1 (MQ=255) aTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttct > 1:438333/1‑91 (MQ=255) aTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttct > 1:579499/1‑91 (MQ=255) aTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttct > 1:1020181/1‑91 (MQ=255) tttATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaaacatcaacacaacaataaaatgataaaaggaagttatgataggctc < 1:970906‑M2/91‑49 (MQ=255) tttATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttctttttt > 1:311991/1‑91 (MQ=255) aTTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAttcttttttctt < 1:797143/91‑1 (MQ=255) gttgtgttgATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTg < 1:1423340/91‑1 (MQ=255) ttgtgttgATGTTTCGATAACGTGGTACATCTTATCaaacatcaacacaacaataaaatgataaaaggaagttatgataggctcaaggcca < 1:327018‑M2/91‑56 (MQ=255) tgtgttgTTGTTTCGATAACGTGGTACATCTTATCATACACCAATTCCAAACCATGCACCATGGCATCATGATATTGTTTTTTCTTTTGCt > 2:3608289/1‑91 (MQ=255) tgtgttgATGTTTCGATAACGTGGTACATCTTATCaaacatcaacacaacaataaaatgataaaaggaagttatgataggctcaaggccat < 2:1366825‑M2/91‑57 (MQ=255) tgtgttgATGTTTCGATAACGTGGTACATCTTATCaaacatcaacacaacaataaaatgataaaaggaagttatgataggctcaaggccat < 1:2447800‑M2/91‑57 (MQ=255) gtgttgATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCtt < 1:3403114/91‑1 (MQ=255) tgttgATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTg < 1:3342042/91‑1 (MQ=255) gttgATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGt < 2:670712/91‑1 (MQ=255) gttgATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGt < 2:3526171/91‑1 (MQ=255) gttgATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGt < 1:1444037/91‑1 (MQ=255) gttgATGTTTCGATAACGTGGTACATCCTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGt < 2:303529/91‑1 (MQ=255) gttgATGATTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCCTTTGCTTGt < 1:1948528/91‑1 (MQ=255) tgATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTAt < 1:1328704/91‑1 (MQ=255) tgATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTAt < 1:2768422/91‑1 (MQ=255) aTGTTTCGATAACGTGGTACATCTTATCaaacatcaacacaacaataaaatgataaaaggaagttatgataggctcaaggccattaaatca < 1:835399‑M2/91‑64 (MQ=255) ttCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTaaa < 1:464952/91‑1 (MQ=255) ttCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTaaa > 2:2617262/1‑91 (MQ=255) tCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAAt < 2:850763/91‑1 (MQ=255) tCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAAt > 2:500826/1‑91 (MQ=255) tCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAAt < 2:2424483/91‑1 (MQ=255) cGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAAtt < 2:574923/91‑1 (MQ=255) gATAACGTGGTACATCTTATCaaacatcaacacaacaataaaatgataaaaggaagttatgataggctcaaggccattaaatcataacttc < 1:649136‑M2/91‑71 (MQ=255) gATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTa < 1:2404874/91‑1 (MQ=255) gATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTa < 2:728640/91‑1 (MQ=255) aTAACGTGGTAGATCTTATCAAATATCAATTCGAAACCATGCACCATGGCATCATGATAGTCTTTTTTCTTTTGCTTGTATTCTAAATTAg < 2:2962895/91‑1 (MQ=255) aTAACGTGGTACATCTTATCaaacatcaacacaacaataaaatgataaaaggaagttatgataggctcaaggccattaaatcataacttcc < 2:2663925‑M2/91‑72 (MQ=255) aTAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAg > 1:2607756/1‑91 (MQ=255) tAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGt > 2:3817448/1‑91 (MQ=255) tAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGt > 1:138840/1‑91 (MQ=255) tAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGt > 1:2055848/1‑91 (MQ=255) gTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTaaa > 2:603312/1‑90 (MQ=255) gTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAAt < 1:936977/91‑1 (MQ=255) tGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATc < 1:1751809/91‑1 (MQ=255) gTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGt < 2:3204364/91‑1 (MQ=255) gTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGt < 1:224413/91‑1 (MQ=255) gTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGt > 1:389090/1‑91 (MQ=255) tACATCTTATCAAACATCAATTCGAATCCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtc < 2:2398114/91‑1 (MQ=255) tACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtc < 1:209955/91‑1 (MQ=255) tACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtc < 2:1302672/91‑1 (MQ=255) tACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtc < 1:965458/91‑1 (MQ=255) aCATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtct < 1:2810909/91‑1 (MQ=255) cacgttATCGAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTTCTTGTATTCTAAATTAGTAAATCGtctt > 2:3757580/5‑91 (MQ=255) cATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtctt > 1:112032/1‑91 (MQ=255) aTCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtcttt < 1:1876585/91‑1 (MQ=255) aTCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAAT‑Gtctttc < 1:3695944/91‑1 (MQ=255) tCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtctttc < 2:2141946/91‑1 (MQ=255) cTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtctttct < 2:1328277/91‑1 (MQ=255) cTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGtctttct > 2:2923244/1‑91 (MQ=255) tATCAAACATCAATTCGAAACCATGAACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGTctttcttt < 1:3610685/91‑1 (MQ=255) aTCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGTCTTTCtttt < 2:462203/91‑1 (MQ=255) | AAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCTTTTTTCTTTTGCTTGTATTCTAAATTAGTAAATCGTCTTTCTTTTTC > USA300TCH1516_ALE/2442812‑2442992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |