BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2455747 =	166 (0.870)	10 (0.060)	5/132	NT	7.2%	intergenic (+5/+61)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A
*	?	USA300TCH1516_ALE	2455795 =	121 (0.770)	10 (0.060)	5/132	NT	7.2%	intergenic (+53/+13)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A

Only 100 of 200 total aligned reads displayed.

AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGTCTC  >  USA300TCH1516_ALE/2455705‑2455885

  aaaaCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTct                                                                                          <  1:3190691/91‑1 (MQ=255)

      cTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatac                                                                                      >  1:2392390/1‑91 (MQ=255)

      cTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatac                                                                                      <  2:852969/91‑1 (MQ=255)

        gaagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCATTTctatacta                                                                                    >  1:470103/1‑91 (MQ=255)

         aagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactat                                                                                   <  2:2669350/91‑1 (MQ=255)

          agaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactata                                                                                  <  2:178873/91‑1 (MQ=255)

           gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                                 >  1:2063837/1‑91 (MQ=255)

           gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                                 <  2:2451654/91‑1 (MQ=255)

           gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                                 <  1:1809508/91‑1 (MQ=255)

            aaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatata                                                                                <  1:3013324/91‑1 (MQ=255)

             aCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTatatat                                                                               <  1:3806829/91‑1 (MQ=255)

             aCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTatatat                                                                               <  2:224747/91‑1 (MQ=255)

                aTCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtattat                                                                            >  1:975450/1‑91 (MQ=255)

                aTCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtattat                                                                            >  1:975602/1‑91 (MQ=255)

                aTCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtattat                                                                            >  1:55377/1‑91 (MQ=255)

                 tCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt                                                                           <  1:294217/91‑1 (MQ=255)

                 tCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt                                                                           <  1:1592453/91‑1 (MQ=255)

                 tCTTCAGATAAAAACAAATAATAACAAAGCGCTCGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt                                                                           >  2:972526/1‑91 (MQ=255)

                   ttCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAtttt                                                                         >  2:2863039/1‑91 (MQ=255)

                   ttCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAtttt                                                                         <  1:2697223/91‑1 (MQ=255)

                     cAGATAAAAACAAATGATAACAAAGCGCTTGCTAGTACCTCTTAAAATGATGATGCTAGCGAGCGCTTTTCTATACTATATATTATTTTTc                                                                       <  2:1107995/91‑1 (MQ=255)

                     cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc                                                                       <  1:1771443/91‑1 (MQ=255)

                     cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc                                                                       <  1:944355/91‑1 (MQ=255)

                     cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc                                                                       <  2:2721420/91‑1 (MQ=255)

                      aGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCt                                                                      <  1:8003/91‑1 (MQ=255)

                       gATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTa                                                                     >  1:1136664/1‑91 (MQ=255)

                             aaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAttt                                                               >  1:794949/1‑91 (MQ=255)

                              aCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtttt                                                              <  2:1552994/91‑1 (MQ=255)

                              aCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtttt                                                              <  2:1001812/91‑1 (MQ=255)

                               cAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTa                                                             >  2:1610041/1‑91 (MQ=255)

                                aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTaa                                                            <  1:3345594/91‑1 (MQ=255)

                                 aataatAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAac                                                           >  1:2924023/1‑91 (MQ=255)

                                 aataatAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAac                                                           >  1:2813270/1‑91 (MQ=255)

                                  ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                                                          <  2:788196/91‑1 (MQ=255)

                                    aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                                        >  2:976223/1‑91 (MQ=255)

                                    aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                                        >  2:1493222/1‑91 (MQ=255)

                                    aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                                        <  1:2563285/91‑1 (MQ=255)

                                    aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                                        <  1:2850494/91‑1 (MQ=255)

                                     ataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTAAACAccc                                                       >  1:1944050/1‑91 (MQ=255)

                                     ataaCAAAGCGCTCGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTCTTCTATACTATATATTATTTTTCTAAAATTTTAACAccc                                                       >  2:3772828/1‑91 (MQ=255)

                                      taaCAAAGCGCTTGCTAGTACCTCTTAAAGAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCct                                                      <  1:3111083/91‑1 (MQ=255)

                                      taaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCct                                                      <  2:3841949/91‑1 (MQ=255)

                                      taaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCct                                                      <  2:2262404/91‑1 (MQ=255)

                                       aaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc                                                     <  1:1617800/91‑1 (MQ=255)

                                       aaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc                                                     <  2:2776067/91‑1 (MQ=255)

                                         cAAAGCGCTTGCTAGTACCTCTTATAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt                                                   <  2:3618501/91‑1 (MQ=255)

                                         cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt                                                   >  2:2962745/1‑91 (MQ=255)

                                          AAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTg                                                  >  1:1493222‑M1/1‑91 (MQ=255)

                                           AAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGa                                                 <  2:2035669‑M1/91‑1 (MQ=255)

                                            AGCGCTTGCTAGTACCTCTTAAAAACATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAg                                                >  1:3618850‑M1/1‑91 (MQ=255)

                                               GCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGc                                             >  1:846860‑M1/1‑91 (MQ=255)

                                               GCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGc                                             <  1:3823994‑M1/91‑1 (MQ=255)

                                                CTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc                                            <  2:1976580‑M1/91‑1 (MQ=255)

                                                   GCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc                                         <  2:1517131‑M1/91‑1 (MQ=255)

                                                     TAGTACCTCTTAAAATGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACaa                                       <  1:3308850‑M1/91‑1 (MQ=255)

                                                     TAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACaa                                       >  1:1778910‑M1/1‑91 (MQ=255)

                                                      agcaCCTCCTACACAGCTGATGCTAGCAAGCGCTTTTCTCTACGATATAGTATTTTTCTCAAATTTTAACTCCCTCTTGATTGCCTACCAt                                      >  2:2262103/4‑91 (MQ=255)

                                                      AGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAAt                                      <  1:1434457‑M1/91‑1 (MQ=255)

                                                      AGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAAt                                      >  1:1109552‑M1/1‑91 (MQ=255)

                                                       gcatcatctttttaagaggtactagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATa                                     >  1:1274103‑M2/36‑91 (MQ=255)

                                                        tACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATaa                                    >  2:2926162/1‑91 (MQ=255)

                                                         atcatctttttaagaggtactagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                                   >  1:704007‑M2/34‑91 (MQ=255)

                                                         atcatctttttaagaggtactagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                                   >  1:701571‑M2/34‑91 (MQ=255)

                                                         aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                                   <  2:2715215/91‑1 (MQ=255)

                                                          ccTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACt                                  <  2:3649042/91‑1 (MQ=255)

                                                            tctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTg                                <  1:3507040/91‑1 (MQ=255)

                                                               tAAAACGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATc                             <  2:3135976/91‑1 (MQ=255)

                                                               tAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATc                             <  2:3377286/91‑1 (MQ=255)

                                                               tAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATc                             <  2:3485309/91‑1 (MQ=255)

                                                                aaaaaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCt                            <  2:2155249/91‑1 (MQ=255)

                                                                aaaaaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCt                            <  2:1171773/91‑1 (MQ=255)

                                                                  aaaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGc                          <  2:523122/91‑1 (MQ=255)

                                                                  aaaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGc                          <  1:3151481/91‑1 (MQ=255)

                                                                   aaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGcc                         <  2:3591324/91‑1 (MQ=255)

                                                                   aaGATGATGCTAGCAAGCGCTCTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGcc                         >  2:1306796/1‑91 (MQ=255)

                                                                    aGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCa                        <  1:1405897/91‑1 (MQ=255)

                                                                     gatgatGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCat                       <  2:3710075/91‑1 (MQ=255)

                                                                     gatgatGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCat                       <  2:1944050/91‑1 (MQ=255)

                                                                        gatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATc                    >  2:232123/1‑91 (MQ=255)

                                                                         atgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCt                   >  2:881169/1‑91 (MQ=255)

                                                                           gCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaa                 >  1:507979/1‑91 (MQ=255)

                                                                            ttagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaag                <  2:563495‑M2/77‑1 (MQ=255)

                                                                            ctagcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaag                <  2:3292946‑M2/77‑1 (MQ=255)

                                                                              agcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaagaa              <  1:104646‑M2/79‑1 (MQ=255)

                                                                               gcaagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaagaag             <  1:2738589‑M2/80‑1 (MQ=255)

                                                                                caagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGt            >  2:596645‑M2/11‑91 (MQ=255)

                                                                                 aagcgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTa           <  1:2046227‑M2/82‑1 (MQ=255)

                                                                                 aagcgctttTCTATACTATATATTATTTTTCCAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTa           <  2:1401008‑M2/82‑1 (MQ=255)

                                                                                    cgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATcc        >  2:295781‑M2/7‑91 (MQ=255)

                                                                                    cgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATcc        <  2:64934‑M2/85‑1 (MQ=255)

                                                                                    cgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATcc        <  2:66023‑M2/85‑1 (MQ=255)

                                                                                    cgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATcc        <  1:2275466‑M2/85‑1 (MQ=255)

                                                                                    cgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATcc        <  1:3594594‑M2/85‑1 (MQ=255)

                                                                                    cgctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATcc        <  1:428736‑M2/85‑1 (MQ=255)

                                                                                      ctttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTg      <  2:690598‑M2/87‑1 (MQ=255)

                                                                                        ttTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGtc    <  1:2180707‑M2/89‑1 (MQ=255)

                                                                                         tTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGtct   >  1:1508058‑M2/2‑91 (MQ=255)

                                                                                         tTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGtct   <  1:1336451‑M2/90‑1 (MQ=255)

                                                                                         tTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCATGtct   >  2:3572532‑M2/2‑91 (MQ=255)

                                                                                          tCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGtctc  >  2:2821373/1‑91 (MQ=255)

AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAAGAAGTATCCTGTCTC  >  USA300TCH1516_ALE/2455705‑2455885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.