BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2469808 =	176 (0.920)	13 (0.080)	9/142	NT	8.2%	intergenic (+151/+95)	USA300HOU_RS12715/emrB	hypothetical protein/Multidrug export protein EmrB
*	?	USA300TCH1516_ALE	2469843 =	134 (0.790)	13 (0.080)	9/142	NT	8.2%	intergenic (+186/+60)	USA300HOU_RS12715/emrB	hypothetical protein/Multidrug export protein EmrB

Only 100 of 240 total aligned reads displayed.

CAATGCCAAATTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCATCT  >  USA300TCH1516_ALE/2469754‑2469933

taaattaattgaagtgtgactaatcaaaaattatgttgtggggacatgatttttAAAGTATCGATAACCATATTTGGCACCGATACTTTaa                                                                                           >  2:1182728‑M1/55‑91 (MQ=255)

cAATGCCAAATTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTaa                                                                                           >  1:2378452/1‑91 (MQ=255)

cAATGCCAAATTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTaa                                                                                           <  1:2673663/91‑1 (MQ=255)

   tGCCAAATTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTaaaaa                                                                                        >  2:1843753/1‑91 (MQ=255)

   tGCCAAATTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTaaaaa                                                                                        <  1:2387624/91‑1 (MQ=255)

    gCCAAATTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAAt                                                                                       >  1:1206199/1‑91 (MQ=255)

       aaaTTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCAt                                                                                    >  1:1334460/1‑91 (MQ=255)

       aaaTTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCAt                                                                                    >  2:107283/1‑91 (MQ=255)

         aTTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGt                                                                                  >  2:2216450/1‑91 (MQ=255)

             tAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTcccc                                                                              >  1:581455/1‑91 (MQ=255)

             tAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTcccc                                                                              <  1:3473628/91‑1 (MQ=255)

              aaTATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAAACATATTTGGCACCGATACTTTAAAAATCATGTCCCca                                                                             >  2:527407/1‑91 (MQ=255)

               atatAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCcac                                                                            >  2:3328988/1‑91 (MQ=255)

               atatAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCcac                                                                            >  1:2944456/1‑91 (MQ=255)

                 ataATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCacaa                                                                          >  2:2638957/1‑91 (MQ=255)

                 ataATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCacaa                                                                          <  1:38651/91‑1 (MQ=255)

                     ttCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATa                                                                      <  2:936608/91‑1 (MQ=255)

                            aaCATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTg                                                               >  2:2009350/1‑91 (MQ=255)

                              cATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGAt                                                             <  1:232093/91‑1 (MQ=255)

                                   tataAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTc                                                        <  2:1552321/91‑1 (MQ=255)

                                    ataAAACAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTca                                                       <  2:1221647/91‑1 (MQ=255)

                                     taAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTcac                                                      >  2:377811/1‑91 (MQ=255)

                                      aaaTCAACAAATCAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTcaca                                                     >  1:2996617/1‑91 (MQ=255)

                                      aaaTCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTcaca                                                     >  2:525509/1‑91 (MQ=255)

                                      aaaTCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTcaca                                                     >  1:3601594/1‑91 (MQ=255)

                                      aaaTCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTcaca                                                     >  1:2355227/1‑91 (MQ=255)

                                       aaTCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCacac                                                    >  2:3879511/1‑91 (MQ=255)

                                       aaTCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCacac                                                    <  1:2912599/91‑1 (MQ=255)

                                       aaTCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCacac                                                    >  2:2395563/1‑91 (MQ=255)

                                        aTCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACt                                                   <  2:2167805/91‑1 (MQ=255)

                                           aacaaATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCa                                                >  1:2571701/1‑91 (MQ=255)

                                            acaaATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaa                                               <  1:2785721/91‑1 (MQ=255)

                                            acaaATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaa                                               >  2:2793461/1‑91 (MQ=255)

                                            acaaATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaa                                               >  1:1501583/1‑91 (MQ=255)

                                            acaaATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaa                                               >  2:165677/1‑91 (MQ=255)

                                            acaaATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaa                                               >  1:3746118/1‑91 (MQ=255)

                                              aaaTAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaatt                                             <  2:2865204/91‑1 (MQ=255)

                                              aaaTAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaatt                                             >  1:2467668/1‑91 (MQ=255)

                                                aTAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaattaa                                           <  2:2378452/91‑1 (MQ=255)

                                                 tttttaaagtatcggtgccaaatatggttatcgatactttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaattaat                                          >  1:1084454‑M2/41‑91 (MQ=255)

                                                  aaaaaaaGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCaattaatt                                         <  1:84935/91‑1 (MQ=255)

                                                  aaaaaaaGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGGCCCCACAACATAATTTTTGATTAGTCACACTTCaattaatt                                         <  1:3222942/91‑1 (MQ=255)

                                                    aaaaaGTATCGATAACCATATTTTGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAattta                                       >  2:2372120/1‑91 (MQ=255)

                                                     aaaaGTATCGATAACCATATTTGGCACCTATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAatttat                                      <  2:2119783/91‑1 (MQ=255)

                                                      AAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAatttatt                                     <  1:684827‑M1/91‑1 (MQ=255)

                                                      AAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAatttatt                                     <  1:2644968‑M1/91‑1 (MQ=255)

                                                      AAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAatttatt                                     >  1:770694‑M1/1‑91 (MQ=255)

                                                       aagtatcggtgccaaatatggttatcgatactttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAGTTAatttattt                                    >  1:3518294‑M2/35‑91 (MQ=255)

                                                        AGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAAtttatttt                                   >  1:1675388‑M1/1‑91 (MQ=255)

                                                        AGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAAtttatttt                                   >  1:1068597‑M1/1‑91 (MQ=255)

                                                         gttTCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAAtttatttta                                  <  2:1738478‑M1/88‑1 (MQ=255)

                                                         gtatcggtgccaaatatggttatcgatactttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAAtttatttta                                  >  1:3140837‑M2/33‑91 (MQ=255)

                                                         gtatcggtgccaaatatggttatcgatactttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAAtttatttta                                  >  2:893208‑M2/33‑91 (MQ=255)

                                                         GTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAAtttatttta                                  >  2:2485489‑M1/1‑91 (MQ=255)

                                                         GTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAAtttatttta                                  <  2:3619055‑M1/91‑1 (MQ=255)

                                                         GTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAAtttatttta                                  <  1:2022600‑M1/91‑1 (MQ=255)

                                                            TCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTtattttattt                               <  1:414010‑M1/91‑1 (MQ=255)

                                                            TCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTtattttattt                               >  1:1000794‑M1/1‑91 (MQ=255)

                                                             CGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAg                                                          <  2:2930729‑M1/63‑1 (MQ=255)

                                                             CGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATtttattta                              <  1:472037‑M1/91‑1 (MQ=255)

                                                             CGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATtttattta                              <  1:674416‑M1/91‑1 (MQ=255)

                                                             CGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATtttattta                              <  1:963785‑M1/91‑1 (MQ=255)

                                                             CGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATtttattta                              <  1:3617975‑M1/91‑1 (MQ=255)

                                                                tAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTc                           <  2:3068618/91‑1 (MQ=255)

                                                                tAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTc                           <  1:2138084/91‑1 (MQ=255)

                                                                 aaCCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCa                          <  1:3241452/91‑1 (MQ=255)

                                                                 aaCCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCa                          <  2:2766795/91‑1 (MQ=255)

                                                                  aCCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCAt                         <  2:2869954/91‑1 (MQ=255)

                                                                     atatTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCAtgat                      <  2:2610113/91‑1 (MQ=255)

                                                                       atTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCAtgattg                    <  2:2571701/91‑1 (MQ=255)

                                                                        tttGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCAtgattga                   >  1:1639946/1‑91 (MQ=255)

                                                                        tttGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCAtgattga                   >  1:662669/1‑91 (MQ=255)

                                                                        tttGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCAtgattga                   >  2:2718655/1‑91 (MQ=255)

                                                                         ttGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCAtgattgat                  <  1:706483/91‑1 (MQ=255)

                                                                         ttGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCAtgattgat                  <  2:3589709/91‑1 (MQ=255)

                                                                          tGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATa                 >  2:2188721/1‑91 (MQ=255)

                                                                           ggCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATAc                <  2:2018579/91‑1 (MQ=255)

                                                                           ggCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATAc                <  1:937441/91‑1 (MQ=255)

                                                                           ggCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATAc                <  2:1110788/91‑1 (MQ=255)

                                                                            gCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACt               <  1:1821887/91‑1 (MQ=255)

                                                                            gCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACt               <  1:2634606/91‑1 (MQ=255)

                                                                            gCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACt               <  2:1436183/91‑1 (MQ=255)

                                                                            gCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACt               <  1:38011/91‑1 (MQ=255)

                                                                             cACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAGTTAATTTATTTTATTTATTCATGATTGATACta              >  1:2731289/1‑91 (MQ=255)

                                                                               ccGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACtatt            <  2:176112/91‑1 (MQ=255)

                                                                               ccGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACtatt            <  1:1884439/91‑1 (MQ=255)

                                                                                cgatactttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACtatta           >  2:709833‑M2/10‑91 (MQ=255)

                                                                                    actttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTg       <  2:1947141‑M2/86‑1 (MQ=255)

                                                                                     ctttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGc      <  1:2279845‑M2/87‑1 (MQ=255)

                                                                                       ttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCAt    >  2:3265407‑M2/3‑91 (MQ=255)

                                                                                       ttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCAt    <  2:3458‑M2/89‑1 (MQ=255)

                                                                                       ttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCAt    <  2:865301‑M2/89‑1 (MQ=255)

                                                                                       ttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCAt    >  2:3672894‑M2/3‑91 (MQ=255)

                                                                                       ttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCAt    <  2:1475605‑M2/89‑1 (MQ=255)

                                                                                       ttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCAt    >  2:1527337‑M2/3‑91 (MQ=255)

                                                                                       ttAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATCTATTTTATTTATTCATGATTGATACTATTATCTGCAt    >  2:2822856‑M2/3‑91 (MQ=255)

                                                                                        tAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCATc   <  2:1144720‑M2/90‑1 (MQ=255)

                                                                                        tAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCATc   >  1:1970119‑M2/2‑91 (MQ=255)

                                                                                         aaaaaTCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCATCt  <  2:660324/91‑1 (MQ=255)

                                                                                         aaaaaTCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCATCt  <  1:869616/91‑1 (MQ=255)

CAATGCCAAATTTTAATATAATTCCTCTAACATTCTATAAATCAACAAATAAAAAAAGTATCGATAACCATATTTGGCACCGATACTTTAAAAATCATGTCCCCACAACATAATTTTTGATTAGTCACACTTCAATTAATTTATTTTATTTATTCATGATTGATACTATTATCTGCATCT  >  USA300TCH1516_ALE/2469754‑2469933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.