| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2787502 = | 220 (1.150) | 20 (0.120) | 14/142 | NT | 10.0% | intergenic (+48/‑192) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR |
| ? | USA300TCH1516_ALE | 2787547 = | 165 (0.980) | intergenic (+93/‑147) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR | |||||
Only 100 of 270 total aligned reads displayed.
ATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAATA > USA300TCH1516_ALE/2787457‑2787637 | aTTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACATCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTc < 2:2941274/91‑1 (MQ=255) ttGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCtt < 2:1063173/91‑1 (MQ=255) ccTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAt > 2:3402018/1‑91 (MQ=255) cTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAtt > 2:97985/1‑91 (MQ=255) cTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAtt < 1:2334389/91‑1 (MQ=255) tGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAttt > 2:598472/1‑91 (MQ=255) gATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTg < 2:315552/91‑1 (MQ=255) atatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTg > 2:138002‑M1/38‑91 (MQ=255) tACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCa < 1:3682344/91‑1 (MQ=255) tACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCa > 2:3814403/1‑91 (MQ=255) tACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCa > 2:2515703/1‑91 (MQ=255) gTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATaa > 1:951714/1‑91 (MQ=255) gTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATaa < 2:75337/91‑1 (MQ=255) tCCACAAGTACCCGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCAAAAt > 1:2998895/1‑91 (MQ=255) tCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAAt < 2:3292249/91‑1 (MQ=255) ccACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAAtt > 1:3107000/1‑91 (MQ=255) ccACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAAtt > 2:2619381/1‑91 (MQ=255) cacaAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTc < 2:3695818/91‑1 (MQ=255) cacaAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTc > 1:3205302/1‑91 (MQ=255) acaAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCg > 2:245152/1‑91 (MQ=255) acaAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCg > 2:2147652/1‑91 (MQ=255) caAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGc > 2:258622/1‑91 (MQ=255) acagagtgcgaattatgcaaataaagaacagcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCa > 2:83511‑M2/72‑91 (MQ=255) aGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAc < 2:2090693/91‑1 (MQ=255) gTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAct < 1:3512247/91‑1 (MQ=255) gTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAct > 1:2953786/1‑91 (MQ=255) tACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCActc > 2:2682064/1‑91 (MQ=255) tACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCActc > 1:1313383/1‑91 (MQ=255) agtgcgaattatgcaaataaagaacagcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCActct > 1:1143181‑M2/68‑91 (MQ=255) aCCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCActct > 1:2015116/1‑91 (MQ=255) ccAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTg > 2:3870665/1‑91 (MQ=255) cAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGt > 2:2552718/1‑91 (MQ=255) cAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGt > 1:621259/1‑91 (MQ=255) cAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGt > 1:620310/1‑91 (MQ=255) aGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGtt > 1:1996084/1‑91 (MQ=255) gATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTa > 1:2768323/1‑91 (MQ=255) aTGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTaa > 1:1710291/1‑91 (MQ=255) gCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTaaaa > 1:1728231/1‑91 (MQ=255) cATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAAt > 1:203400/1‑91 (MQ=255) tAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCa > 1:732942/1‑91 (MQ=255) aaaTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCat < 1:1047164/91‑1 (MQ=255) gcaaataaagaacagcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCata > 2:1412132‑M2/56‑91 (MQ=255) aaTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCata > 2:1965546/1‑91 (MQ=255) aaTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCata > 2:3466518/1‑91 (MQ=255) aTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCatat > 1:1840537/1‑91 (MQ=255) tCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATaa < 1:3630742/91‑1 (MQ=255) cAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATaaa < 1:1068738/91‑1 (MQ=255) cAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATaaa > 2:203606/1‑91 (MQ=255) aGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTaaaa > 2:2303726/1‑81 (MQ=255) aaaaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGt < 2:2980915/91‑1 (MQ=255) aaaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCTCACTCTGTTAAAATCATATAAAAGtt < 2:2208983/91‑1 (MQ=255) aaaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGtt > 1:2962732/1‑91 (MQ=255) gaacagcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTc > 2:167335‑M2/47‑91 (MQ=255) aaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTc < 2:139096/91‑1 (MQ=255) acagcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGc > 2:2274376‑M2/45‑91 (MQ=255) ACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGc > 1:1194179‑M1/1‑91 (MQ=255) agcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCtt > 2:495151‑M2/43‑91 (MQ=255) AGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCtt > 2:920763‑M1/1‑91 (MQ=255) AGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCtt > 2:3740752‑M1/1‑91 (MQ=255) AGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCtt < 1:2597054‑M1/91‑1 (MQ=255) GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCttt < 2:1121106‑M1/91‑1 (MQ=255) GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCttt < 2:3208923‑M1/91‑1 (MQ=255) GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCttt > 1:3402018‑M1/1‑91 (MQ=255) CAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTa < 2:1255132‑M1/91‑1 (MQ=255) CAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTa > 2:3626234‑M1/1‑91 (MQ=255) CAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTa < 1:68553‑M1/91‑1 (MQ=255) agtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTaa > 2:1280310‑M2/40‑91 (MQ=255) gtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATaaaa < 1:2733555‑M2/41‑1 (MQ=255) gtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATaaaa > 2:2733555‑M2/39‑79 (MQ=255) GTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAAt < 2:43046‑M1/91‑1 (MQ=255) gagaTATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGt < 1:86870/91‑1 (MQ=255) aagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGt > 2:1700373‑M2/37‑91 (MQ=255) tatTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCAtt < 1:3285069/91‑1 (MQ=255) tttttCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGa < 2:1765657/91‑1 (MQ=255) ttttCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGAc > 2:3035382/1‑91 (MQ=255) tttCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTTATTGACg > 1:1944917/1‑91 (MQ=255) ttCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgt < 1:676423/91‑1 (MQ=255) tATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatg < 1:1404646/91‑1 (MQ=255) tATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatg > 2:3785386/1‑91 (MQ=255) aTTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTGAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatgt < 1:3366487/91‑1 (MQ=255) tttGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatgta > 2:1611167/1‑91 (MQ=255) tttGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatgta < 1:2202493/91‑1 (MQ=255) tttGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatgta > 1:24758/1‑91 (MQ=255) tttGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatgta < 2:1589456/91‑1 (MQ=255) tGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGtata < 2:290702/91‑1 (MQ=255) aaaTATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAg < 1:2552718/91‑1 (MQ=255) atCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGctct < 1:3475699/91‑1 (MQ=255) tctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCtctc < 1:83511‑M2/78‑1 (MQ=255) tCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCtctc > 1:1664951/1‑91 (MQ=255) tCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCtctc > 2:636474/1‑91 (MQ=255) cTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatg > 1:2931407/1‑79 (MQ=255) tACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATg > 2:2000737/1‑91 (MQ=255) actgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGt < 1:1611167‑M2/82‑1 (MQ=255) actgctgttCTTTATGTGCATAATTGGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGt < 2:3361014‑M2/82‑1 (MQ=255) ctgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGtt < 1:3258787‑M2/83‑1 (MQ=255) ctgctgttCTTTACTTGCATAATTCGCACTCTGTTAAAATCATGTAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGtt < 1:3884209‑M2/83‑1 (MQ=255) ctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTtaa > 1:2357401‑M2/6‑91 (MQ=255) gttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTACTGTCATTGACGTATGTATAAGCTCTCATGTTtaata > 2:3835123‑M2/4‑91 (MQ=255) gttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTtaata > 1:2837263‑M2/4‑91 (MQ=255) tCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTaataat > 1:3675191‑M2/2‑91 (MQ=255) | ATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAATA > USA300TCH1516_ALE/2787457‑2787637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |