| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1662011 | 191 (1.090) | 26 (0.170) | 16/156 | 13.2 | 13.8% | intergenic (‑98/+57) | USA300HOU_RS08275/rpmG2_2 | 5‑formyltetrahydrofolate cyclo‑ligase/50S ribosomal protein L33 2 |
| ? | USA300TCH1516_ALE | = 1662026 | 159 (1.040) | intergenic (‑113/+42) | USA300HOU_RS08275/rpmG2_2 | 5‑formyltetrahydrofolate cyclo‑ligase/50S ribosomal protein L33 2 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1661910‑1662011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggtgaaaTCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAATTGTC < USA300TCH1516_ALE/1662026‑1661937 TCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑A > 1:2391492/1‑91TCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑A > 1:2122385/1‑91 ATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAA > 1:3031819/1‑91 TTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAA > 1:997153/1‑91 TTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAA < 1:1828055/91‑1 TTATGTTGTCATGACGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAA < 1:1826071/91‑1 ATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAG < 1:2006544/91‑1 TGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGG < 1:465590/91‑1 TGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGG > 2:2016692/1‑91 TGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGG > 2:2367074/1‑91 GTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGT > 2:2519107/1‑91 TTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTG < 2:2273579/91‑1 TTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTG < 1:788083/91‑1 TTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTG < 2:277538/91‑1 TTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTG < 2:277505/91‑1 TTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTG > 1:1255200/1‑91 TGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGA > 1:1975405/1‑91 GTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAA > 2:2108642/1‑91 GTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAA < 1:1011503/91‑1 GTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAA < 1:1011678/91‑1 TCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAA > 2:2084990/1‑91 TCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAA > 1:1116430/1‑91 TCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAA > 2:1633958/1‑91 AATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAA < 2:1899504/91‑1 TTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATA < 1:1385609/91‑1 ATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAG < 2:1460359/91‑1 GACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGT < 1:2153907/91‑1 CAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTT < 1:660285/91‑1 ATTCTAATATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCA < 2:2150826/91‑1 ATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCA < 2:1724605/91‑1 ATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCA < 2:2804841/91‑1 ATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCA < 1:2836429/91‑1 TTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATA‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCAC < 1:557970/91‑1 TCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACC < 1:956670/91‑1 TCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACC < 2:2519467/91‑1 tagAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTT < 2:83526/88‑1 TAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTT < 1:398515/91‑1 TAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTT < 2:2868743/91‑1 AAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTT < 2:1071702/91‑1 AATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTT < 2:718964/91‑1 ATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTA < 1:748691/91‑1 ATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTA < 1:2110321/91‑1 ATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATA‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTA < 1:482325/91‑1 TTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATA‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAA < 2:2320111/91‑1 TTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATA‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAAT < 1:473148/91‑1 TTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATA‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAAT < 2:2226056/91‑1 TGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTAT < 2:2118804/91‑1 AAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGA < 1:3016105/91‑1 AAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGA < 1:2947085/91‑1 AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATT > 2:99361/1‑91 AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATT < 1:1384864/91‑1 AAAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAACAAATT > 2:2505223/1‑91 AAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTT < 2:2597590/91‑1 AAAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTT < 1:297046/91‑1 AAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTT < 1:3072119/91‑1 AAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTT < 1:1798044/91‑1 AAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTT < 1:1247269/91‑1 AAAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTT < 1:1513363/91‑1 AAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTA > 1:2828125/1‑91 AAGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTA > 1:2826578/1‑91 AGGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAG > 1:1210316/1‑91 GGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGA > 2:162376/1‑91 GGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGA > 1:103855/1‑91 GGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGA > 1:103755/1‑91 GGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGA > 1:721338/1‑91 GGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGA > 1:458216/1‑91 GGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGA > 1:458512/1‑91 GGTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGA > 1:458573/1‑91 GTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAA < 2:1341642/91‑1 GTGAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAA < 2:1339996/91‑1 GAAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAATT < 1:1771923/91‑1 AAATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAATTG > 1:3028570/1‑91 AATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAATTGT > 2:3059727/1‑91 AATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAATTGT > 2:351828/1‑91 ATCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAATTGTC < 2:183363/91‑1 TCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATT‑AAAAAGGTGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1661910‑1662011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggtgaaaTCTCAAAATAAGAGGTTTCACCTTTTTAATTATGCACACGTATGAAATGATAAAAGATTTTCAATTGAAATAATAAATTTTAGAATTGTC < USA300TCH1516_ALE/1662026‑1661937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |