BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1910672 =	192 (1.090)	224 (1.470)	30/156	7.9	57.4%	intergenic (+205/‑350)	crcB_2/USA300TCH1516_01771	Putative fluoride ion transporter CrcB/hypothetical protein
*	?	USA300TCH1516_ALE	1910712 =	NA (NA)	224 (1.470)	30/156	7.9	57.4%	intergenic (+245/‑310)	crcB_2/USA300TCH1516_01771	Putative fluoride ion transporter CrcB/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 192 total aligned reads displayed.

TTGTTGCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGG  >  USA300TCH1516_ALE/1910586‑1910761

 tgttgCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGt                                                                                        >  1:1847760/1‑91 (MQ=255)

   ttgCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTaa                                                                                      <  2:1187235/91‑1 (MQ=255)

   ttgCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTaa                                                                                      <  1:9494/91‑1 (MQ=255)

   ttgCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTaa                                                                                      >  2:2433606/1‑91 (MQ=255)

    tgCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAg                                                                                     <  2:2299913/91‑1 (MQ=255)

     gCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGa                                                                                    <  2:222726/91‑1 (MQ=255)

     gCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGa                                                                                    >  2:801879/1‑91 (MQ=255)

      ccGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAt                                                                                   <  2:394394/91‑1 (MQ=255)

      ccGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAt                                                                                   <  2:1562113/91‑1 (MQ=255)

      ccGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAt                                                                                   >  1:2930343/1‑91 (MQ=255)

      ccGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAt                                                                                   <  1:2373250/91‑1 (MQ=255)

      ccGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAt                                                                                   >  2:2791011/1‑91 (MQ=255)

            aaaTAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAAtttt                                                                             >  2:1187460/1‑91 (MQ=255)

             aataatGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTc                                                                            >  1:1594356/1‑91 (MQ=255)

                aatGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AAt                                                                        >  1:1357899/1‑91 (MQ=255)

                aatGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AAt                                                                        <  1:441466/91‑1 (MQ=255)

                 atGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AAtt                                                                       >  2:1997879/1‑91 (MQ=255)

                   gtgAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAg                                                                     <  1:332123/91‑1 (MQ=255)

                     gAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGaa                                                                   >  1:1634481/1‑91 (MQ=255)

                      aaTGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGaaa                                                                  >  1:2905635/1‑91 (MQ=255)

                      aaTGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGaaa                                                                  <  2:218350/91‑1 (MQ=255)

                       aTGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGaaaa                                                                 <  1:2118285/91‑1 (MQ=255)

                        tGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAa‑t                                                               <  2:2339260/91‑1 (MQ=255)

                        tGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAa‑t                                                               <  2:1569948/91‑1 (MQ=255)

                        tGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAa‑tt                                                              <  2:1237953/91‑2 (MQ=37)

                         gTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAa‑ta                                                              <  1:2223228/91‑1 (MQ=255)

                         gTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAa‑tta                                                             <  1:97340/91‑3 (MQ=25)

                          tCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAa‑tat                                                             <  1:639421/91‑1 (MQ=255)

                          tCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAa‑tat                                                             <  1:2709505/91‑1 (MQ=255)

                          tCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATACCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTC‑TAATTGAAAa‑ttat                                                            <  1:2687207/91‑4 (MQ=25)

                          tCAATAAATTCTCCAAACTAGTCGAAAATAAAGAGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAa‑ttat                                                            <  2:515167/91‑4 (MQ=21)

                           cAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAa‑ttatc                                                           <  1:1201973/91‑5 (MQ=25)

                            aaTAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCt                                                           >  2:683466/1‑91 (MQ=255)

                             aTAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCtt                                                          <  1:1906476/91‑1 (MQ=255)

                             aTAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCtt                                                          <  1:432763/91‑1 (MQ=21)

                              tAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTa                                                         >  1:928875/1‑91 (MQ=255)

                                aaTTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTAc                                                        <  1:1923891/91‑1 (MQ=255)

                                aaTTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTAct                                                       <  1:89500/91‑1 (MQ=21)

                                  ttCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgc                                                     <  1:762008/91‑1 (MQ=255)

                                  ttCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgc                                                     >  2:642412/1‑91 (MQ=255)

                                  ttCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgc                                                     <  2:1722878/91‑1 (MQ=21)

                                   tctcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTACAAAA‑TATCTTActgct                                                    >  2:2963710/1‑91 (MQ=255)

                                    ctcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGAT‑ATTTTCTAATT‑GAAAATTATCTTActgctt                                                   <  2:2639074/91‑2 (MQ=18)

                                    ctcCAAACTAGTCAAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTActgctg                                                   <  2:752985/91‑1 (MQ=255)

                                     tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGt                                                  >  2:2649083/1‑91 (MQ=255)

                                     tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGt                                                  <  2:1642937/91‑1 (MQ=255)

                                     tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGt                                                  <  2:2287571/91‑1 (MQ=255)

                                     tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGt                                                  >  2:2923918/1‑91 (MQ=255)

                                     cccAAACTAGTCGAAAATAAAGGGCGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGt                                                  >  2:1835769/2‑91 (MQ=255)

                                      ccAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGtt                                                 <  1:723283/91‑1 (MQ=255)

                                      ccAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATATTACTGCTGtt                                                 >  1:2623217/1‑91 (MQ=255)

                                       cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtc                                                >  1:1246286/1‑91 (MQ=255)

                                       cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtc                                                <  1:1927336/91‑1 (MQ=255)

                                       cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtc                                                >  2:390532/1‑91 (MQ=255)

                                        aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtct                                               <  1:1020086/91‑1 (MQ=255)

                                        aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtct                                               <  1:18128/91‑1 (MQ=255)

                                        aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtct                                               <  1:1537880/91‑1 (MQ=255)

                                        aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTtct                                               <  1:282928/91‑1 (MQ=255)

                                          aCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTctct                                             >  1:1004474/1‑91 (MQ=255)

                                           cTACTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTa                                            <  1:2401245/91‑1 (MQ=255)

                                             aGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAtt                                          <  1:157777/91‑1 (MQ=255)

                                             aGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAtt                                          <  2:765328/91‑1 (MQ=255)

                                              gTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTAttt                                         >  2:3165/1‑91 (MQ=255)

                                                cGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtat                                       >  2:1218117/1‑91 (MQ=255)

                                                cGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtat                                       >  2:1398923/1‑91 (MQ=255)

                                                cGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtat                                       <  1:2761165/91‑1 (MQ=255)

                                                 gAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTtata                                      <  1:332228/91‑1 (MQ=255)

                                                  aaaaTAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATAc                                     <  2:1484811/91‑1 (MQ=255)

                                                   aaaTAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACa                                    >  2:457555/1‑91 (MQ=255)

                                                    aaTAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACaa                                   <  2:1512946/91‑1 (MQ=255)

                                                      tAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATa                                 <  2:940739/91‑1 (MQ=255)

                                                      tAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATa                                 <  2:1665130/91‑1 (MQ=255)

                                                       aaaGGGAGTGGGACATAAATCCCT‑AAAAATATAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATa                                 <  1:2477709/91‑1 (MQ=255)

                                                       aaaGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATAc                                >  2:1015305/1‑91 (MQ=255)

                                                        aaGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACt                               >  1:3021410/1‑91 (MQ=255)

                                                         ctggAGTGTGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑TATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACtt                              <  2:3087077/89‑1 (MQ=255)

                                                          gggAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTc                             >  1:3016150/1‑91 (MQ=40)

                                                           ggAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCg                            >  1:302336/1‑91 (MQ=39)

                                                           ggAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCg                            <  2:2826594/91‑1 (MQ=39)

                                                              gTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTAt                         <  1:533537/91‑1 (MQ=35)

                                                                gggACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                       <  2:104666/91‑1 (MQ=34)

                                                                  gACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGaa                     >  1:1855456/1‑91 (MQ=34)

                                                                    cATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATg                   >  2:2221690/1‑91 (MQ=34)

                                                                     aTAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATgg                  <  1:2699535/91‑1 (MQ=34)

                                                                      tAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                 <  1:936070/91‑1 (MQ=33)

                                                                      tAAATCACT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                 <  2:2156472/91‑1 (MQ=18)

                                                                       aaaTCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCt                <  2:575703/91‑1 (MQ=33)

                                                                        aaTCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGCAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCtt               >  2:1312772/1‑91 (MQ=18)

                                                                          tCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg             <  1:173796/91‑1 (MQ=33)

                                                                          tCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg             >  1:1614899/1‑91 (MQ=34)

                                                                           cccT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            >  2:972352/1‑91 (MQ=34)

                                                                           cccT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            >  2:274479/1‑91 (MQ=34)

                                                                           cccT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  2:2371219/91‑1 (MQ=34)

                                                                           cccT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  2:1006500/91‑1 (MQ=34)

                                                                           cccT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  1:2630855/91‑1 (MQ=34)

                                                                           cccT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  1:2069454/91‑1 (MQ=34)

                                                                            ccT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCt           >  1:1675449/1‑91 (MQ=34)

                                                                                aaaaa‑aaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTc        <  2:1471205/91‑1 (MQ=33)

                                                                                    a‑aaaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAg    <  2:1917608/91‑1 (MQ=33)

                                                                                       aaGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAggg  >  1:1094474/1‑91 (MQ=31)

TTGTTGCCGTTTAAATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAA‑AAAGCAGTAAGATAATTTTC‑AATTAGAAAA‑TATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGG  >  USA300TCH1516_ALE/1910586‑1910761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.