New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1910672 =192 (1.090)224 (1.470) 30/156 7.9 57.4% intergenic (+205/‑350) crcB_2/USA300TCH1516_01771 Putative fluoride ion transporter CrcB/hypothetical protein
?USA300TCH1516_ALE 1910712 = NA (NA)intergenic (+245/‑310) crcB_2/USA300TCH1516_01771 Putative fluoride ion transporter CrcB/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 105 total aligned reads displayed.

CTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGG  >  USA300TCH1516_ALE/1910622‑1910761
                                                                                           |                                                 
ctcCAAACTAGTCAAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTActgctg                                                   <  2:752985/91‑1 (MQ=255)
 tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGACAATATCTTACTGCTGt                                                  >  2:201094/1‑91 (MQ=255)
 tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                  <  2:1642937/91‑1 (MQ=255)
 tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                  >  2:2923918/1‑91 (MQ=255)
 tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                  <  2:2287571/91‑1 (MQ=255)
 tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                  >  1:1209097/1‑91 (MQ=255)
 tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                  <  2:549143/91‑1 (MQ=255)
 tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                  >  2:2649083/1‑91 (MQ=255)
 cccAAACTAGTCGAAAATAAAGGGCGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                  >  2:1835769/2‑91 (MQ=255)
  ccAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGtt                                                 <  1:723283/91‑1 (MQ=255)
  ccAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGtt                                                 >  2:224143/1‑91 (MQ=255)
  ccAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATATTACTGCTGtt                                                 >  1:2623217/1‑91 (MQ=255)
   cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtc                                                <  1:1817423/91‑1 (MQ=255)
   cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtc                                                <  1:1927336/91‑1 (MQ=255)
   cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtc                                                >  1:1246286/1‑91 (MQ=255)
   cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtc                                                >  2:390670/1‑91 (MQ=255)
   cAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtc                                                >  2:390532/1‑91 (MQ=255)
    aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtct                                               <  1:282928/91‑1 (MQ=255)
    aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtct                                               <  1:1020086/91‑1 (MQ=255)
    aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtct                                               <  1:1537880/91‑1 (MQ=255)
    aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtct                                               <  1:18128/91‑1 (MQ=255)
    aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtct                                               <  1:1504014/91‑1 (MQ=255)
      aCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTctct                                             >  1:1004474/1‑91 (MQ=255)
      aCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTctct                                             >  1:2243703/1‑91 (MQ=255)
       cTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTa                                            <  1:302180/91‑1 (MQ=255)
       cTACTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTa                                            <  1:2401245/91‑1 (MQ=255)
         aGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAtt                                          <  1:157971/91‑1 (MQ=255)
         aGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAtt                                          <  1:157777/91‑1 (MQ=255)
         aGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAtt                                          <  2:765328/91‑1 (MQ=255)
         aGTCGAAAATAAAGGGAGTGGGACAGAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAtt                                          <  1:2873549/91‑1 (MQ=255)
          gTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAttt                                         >  2:3165/1‑91 (MQ=255)
          gTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAttt                                         >  2:3149/1‑91 (MQ=255)
           tCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTta                                        <  1:1896826/91‑1 (MQ=255)
            cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                       <  2:1663076/91‑1 (MQ=255)
            cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                       <  2:1954030/91‑1 (MQ=255)
            cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                       >  2:1218117/1‑91 (MQ=255)
            cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                       <  1:1109099/91‑1 (MQ=255)
            cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                       >  2:1398923/1‑91 (MQ=255)
            cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                       <  1:2761165/91‑1 (MQ=255)
            cGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                       >  1:2757474/1‑91 (MQ=255)
             gAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtata                                      <  1:332228/91‑1 (MQ=255)
              aaaaTAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATAc                                     <  2:1484811/91‑1 (MQ=255)
              aaaaTAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATAc                                     >  1:92186/1‑91 (MQ=255)
               aaaTAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACa                                    >  2:457555/1‑91 (MQ=255)
                aaTAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACaa                                   <  2:1512946/91‑1 (MQ=255)
                 aTAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAAt                                  <  1:21151/91‑1 (MQ=255)
                  tAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATa                                 <  2:1665130/91‑1 (MQ=255)
                  tAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATa                                 <  2:940739/91‑1 (MQ=255)
                  tAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATa                                 <  1:1598894/91‑1 (MQ=255)
                  tAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATa                                 <  2:1884089/91‑1 (MQ=255)
                   aaaGGGAGTGGGACATAAATCCCTAAAAATATAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATa                                 <  1:2477709/91‑1 (MQ=255)
                   aaaGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATAc                                >  2:700533/1‑91 (MQ=255)
                   aaaGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATAc                                >  2:1015305/1‑91 (MQ=255)
                   aaaGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATAc                                >  2:1015312/1‑91 (MQ=255)
                    atggggGTGTGACATAAATCCCTAAAAA‑AAAGCAATCAGATTATTTTCAATTAGAAAAGATCTTACTGTTTTTCTCTATTTATACAATACt                               <  2:3005159/89‑1 (MQ=11)
                     ctggAGTGTGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCTATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACtt                              <  2:3087077/89‑1 (MQ=255)
                     aGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACtt                              <  1:206212/91‑1 (MQ=40)
                      gggAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATTCAATAcgaa                             <  1:162641/91‑4 (MQ=255)
                      gggAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                             >  1:3016150/1‑91 (MQ=40)
                      gggAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                             >  2:1053129/1‑91 (MQ=40)
                      gggAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                             >  1:155073/1‑91 (MQ=40)
                      gggAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                             >  1:3016149/1‑91 (MQ=40)
                      gggAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTAATACAATACTTc                             >  1:1297291/1‑91 (MQ=255)
                       ggAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCg                            <  2:2826594/91‑1 (MQ=39)
                       ggAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCg                            >  1:302336/1‑91 (MQ=39)
                         aGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTa                          >  1:754253/1‑91 (MQ=37)
                          gTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTAt                         <  1:533537/91‑1 (MQ=35)
                            gggACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                       <  2:104666/91‑1 (MQ=34)
                            gggACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                       <  1:3068402/91‑1 (MQ=34)
                              gACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGaa                     >  1:939454/1‑91 (MQ=34)
                              gACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGaa                     >  1:1855456/1‑91 (MQ=34)
                                cATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATg                   >  1:994864/1‑91 (MQ=34)
                                cATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATg                   >  2:2224647/1‑91 (MQ=34)
                                cATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATg                   >  2:2221690/1‑91 (MQ=34)
                                 aTAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATgg                  <  1:2699535/91‑1 (MQ=34)
                                  tAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                 <  1:936070/91‑1 (MQ=33)
                                  tAAATCACTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                 <  2:2156472/91‑1 (MQ=18)
                                   aaaTCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCt                <  2:575703/91‑1 (MQ=33)
                                      tCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg             <  1:173796/91‑1 (MQ=33)
                                      tCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg             >  1:1614899/1‑91 (MQ=34)
                                      acccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg             <  2:2841014/90‑1 (MQ=21)
                                       cccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATGCTTCGTATTGAATGGCTTCGc            <  2:151705/91‑1 (MQ=21)
                                       cccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            >  2:972352/1‑91 (MQ=34)
                                       cccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  2:2371219/91‑1 (MQ=34)
                                       cccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  1:2069454/91‑1 (MQ=34)
                                       cccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  2:1006500/91‑1 (MQ=34)
                                       cccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  1:2630855/91‑1 (MQ=34)
                                       cccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            <  1:3019625/91‑1 (MQ=33)
                                       cccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc            >  2:274479/1‑91 (MQ=34)
                                        ccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCt           >  1:1675029/1‑91 (MQ=34)
                                        ccTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCt           >  1:1675449/1‑91 (MQ=34)
                                          tAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCttt         <  1:480953/91‑1 (MQ=34)
                                           aaaaa‑aaaGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTc        <  2:1471205/91‑1 (MQ=33)
                                            aaaa‑aaaGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc       >  2:671437/1‑91 (MQ=34)
                                               a‑aaaGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAg    <  2:1917608/91‑1 (MQ=33)
                                                 aaaGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAgg   <  1:215712/91‑1 (MQ=32)
                                                 aaaGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAgg   >  2:1352612/1‑91 (MQ=32)
                                                  aaGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAggg  <  1:878966/91‑1 (MQ=31)
                                                  aaGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAggg  >  1:931475/1‑91 (MQ=31)
                                                  aaGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAggg  >  1:1094474/1‑91 (MQ=31)
                                                                                           |                                                 
CTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAA‑AAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGG  >  USA300TCH1516_ALE/1910622‑1910761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.