BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2090980	183 (1.040)	14 (0.130) +AATGGTTATTAATTTAATCTTTAATCTAAAATAGC	9/110	12.7	12.0%	intergenic (‑214/+324)	USA300HOU_RS10575/USA300HOU_RS10590	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2265579	155 (0.880)	14 (0.130) +AATGGTTATTAATTTAATCTTTAATCTAAAATAGC	9/110	12.7	12.0%	intergenic (+442/+587)	USA300HOU_RS11590/hin_3	hypothetical protein/DNA‑invertase hin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 183 total aligned reads displayed.

AGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACTAATTGTAAT  >  USA300TCH1516_ALE/2090891‑2091070

 gCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAtt                                                                                          <  1:340351/91‑1 (MQ=255)

  cccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttt                                                                                         <  1:2666570/91‑1 (MQ=255)

  cccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttt                                                                                         <  2:698905/91‑1 (MQ=255)

  cccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttt                                                                                         >  2:685451/1‑91 (MQ=255)

  cccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttt                                                                                         >  1:1417763/1‑91 (MQ=255)

    cGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttttt                                                                                       <  2:1509052/91‑1 (MQ=255)

     gTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAtttttt                                                                                      <  2:1117292/91‑1 (MQ=255)

        aaaaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTAtt                                                                                   <  2:489121/91‑1 (MQ=255)

        aaaaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGATAGCGATGGTTATTTTTGAtt                                                                                   >  2:3065539/1‑91 (MQ=255)

          aaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGc                                                                                 <  2:1376822/91‑1 (MQ=255)

           aaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCt                                                                                <  1:940284/91‑1 (MQ=255)

             gACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTa                                                                              >  2:1842112/1‑91 (MQ=255)

               cGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAAt                                                                            <  2:1913665/91‑1 (MQ=255)

               cGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAAt                                                                            >  1:1936478/1‑91 (MQ=255)

               cGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAAt                                                                            <  2:1913628/91‑1 (MQ=255)

               cGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAAt                                                                            >  2:2652248/1‑91 (MQ=255)

                 gTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTc                                                                          <  2:2684064/91‑1 (MQ=255)

                 gTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTc                                                                          <  2:3054764/91‑1 (MQ=255)

                   ggCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCaa                                                                        >  2:2063551/1‑91 (MQ=255)

                   ggCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCaa                                                                        >  2:1020273/1‑91 (MQ=255)

                   ggCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCaa                                                                        >  2:823710/1‑91 (MQ=255)

                   ggCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCaa                                                                        <  1:344051/91‑1 (MQ=255)

                    gCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAAt                                                                       <  2:2317505/91‑1 (MQ=255)

                    gCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAAt                                                                       <  1:1360680/91‑1 (MQ=255)

                     cTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATa                                                                      >  1:239024/1‑91 (MQ=255)

                       aTTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAg                                                                    >  1:978666/1‑91 (MQ=255)

                       aTTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAg                                                                    <  1:666793/91‑1 (MQ=255)

                       aTTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAg                                                                    <  2:994458/91‑1 (MQ=255)

                         tttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCt                                                                  <  1:2063814/91‑1 (MQ=255)

                           tAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTg                                                                <  1:1055078/91‑1 (MQ=255)

                           tAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTg                                                                <  2:958105/91‑1 (MQ=255)

                           tAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATCTTTTATTGCTTAATTCAATAAGCTTg                                                                <  2:1759461/91‑1 (MQ=255)

                            agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                               >  2:1656573/1‑91 (MQ=255)

                            agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                               <  1:219408/91‑1 (MQ=255)

                             gattaacgattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTAGAt                                                              >  1:2403782/1‑91 (MQ=255)

                              attaaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGAtt                                                             >  1:1485736/1‑91 (MQ=255)

                               ttaaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTa                                                            >  2:1207341/1‑91 (MQ=255)

                                taaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTAc                                                           <  1:967574/91‑1 (MQ=255)

                                 aaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACt                                                          >  1:2332959/1‑91 (MQ=255)

                                 aaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACt                                                          <  2:506139/91‑1 (MQ=255)

                                  aagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTa                                                         >  2:1220583/1‑91 (MQ=255)

                                  aagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTa                                                         >  2:1506537/1‑91 (MQ=255)

                                   agattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAg                                                        >  1:411177/1‑91 (MQ=255)

                                   agattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAg                                                        >  2:617618/1‑91 (MQ=255)

                                     attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                                      <  2:1285923/91‑1 (MQ=255)

                                     attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                                      <  2:2945021/91‑1 (MQ=255)

                                     attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                                      <  1:434437/91‑1 (MQ=255)

                                     attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGAGGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                                      <  2:2390432/91‑1 (MQ=255)

                                      ttaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAcc                                                     <  1:1852592/91‑1 (MQ=255)

                                      ttaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAcc                                                     <  1:2901993/91‑1 (MQ=255)

                                       taaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCt                                                    >  1:492108/1‑91 (MQ=255)

                                        aaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTa                                                   >  1:1564031/1‑91 (MQ=255)

                                        aaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTa                                                   <  1:3060860/91‑1 (MQ=255)

                                        aaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTACTCCTa                                                   >  2:2860076/1‑91 (MQ=255)

                                         aattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTAt                                                  >  2:2255309/1‑91 (MQ=255)

                                          attaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATc                                                 <  1:1797563/91‑1 (MQ=255)

                                          attaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATc                                                 >  1:2110509/1‑91 (MQ=255)

                                            taattaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCaa                                               <  1:2574760/91‑1 (MQ=255)

                                            taataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCaa                                               <  2:566893/91‑1 (MQ=255)

                                             aataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAAt                                              >  2:1945796/1‑91 (MQ=255)

                                              ataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATg                                             <  1:2280063/91‑1 (MQ=255)

                                                aaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCa                                           <  1:1906927/91‑1 (MQ=255)

                                                   cATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATa                                        >  1:675692/1‑91 (MQ=255)

                                                   cATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATa                                        <  1:581428/91‑1 (MQ=255)

                                                    aTTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATaa                                       <  1:1012895/91‑1 (MQ=255)

                                                    aTTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATaa                                       <  1:1334850/91‑1 (MQ=255)

                                                    aTTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATaa                                       >  2:517662/1‑91 (MQ=255)

                                                     tttAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAg                                      <  1:3021170/91‑1 (MQ=255)

                                                       tAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGa                                    <  1:409143/91‑1 (MQ=255)

                                                        aaCCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGGTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGaa                                   <  1:2455899/91‑1 (MQ=255)

                                                        aaCCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCGATGCAATAAGGaa                                   <  1:1282671/91‑1 (MQ=255)

                                                        aaCCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGaa                                   <  1:1282699/91‑1 (MQ=255)

                                                        aaCCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGaa                                   <  1:747234/91‑1 (MQ=255)

                                                         aCCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTTCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAAt                                  >  2:1179212/1‑91 (MQ=255)

                                                         aCCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATACGGAAt                                  >  2:2502622/1‑91 (MQ=255)

                                                         aCCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAAt                                  >  1:2552685/1‑91 (MQ=255)

                                                         aCCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAAt                                  <  1:1866661/91‑1 (MQ=255)

                                                          ccATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATa                                 >  2:1306692/1‑91 (MQ=255)

                                                             tCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAAc                              <  1:2840297/91‑1 (MQ=255)

                                                                 aaCCAGCCAGAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCaaa                          <  2:1126511/91‑1 (MQ=255)

                                                                   ccAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACt                        >  1:1236058/1‑91 (MQ=255)

                                                                   ccAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACt                        <  2:2495696/91‑1 (MQ=255)

                                                                   ccAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACt                        >  1:2137067/1‑91 (MQ=255)

                                                                     aGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGc                      >  2:721181/1‑91 (MQ=255)

                                                                      gCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCa                     >  1:1625377/1‑91 (MQ=255)

                                                                       ccAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCaa                    >  1:89487/1‑91 (MQ=255)

                                                                           aGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATg                <  1:559885/91‑1 (MQ=255)

                                                                            gTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATgg               >  1:1997348/1‑91 (MQ=255)

                                                                            gTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATgg               <  2:1474509/91‑1 (MQ=255)

                                                                             ttAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGt              <  1:2893669/91‑1 (MQ=255)

                                                                             ttAGCGATGGTGATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATTCAATAAGGAATAAACCAAACTGCAACATGGt              <  2:2368822/91‑1 (MQ=255)

                                                                              tAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTa             <  1:1192568/91‑1 (MQ=255)

                                                                               aGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTAc            <  1:2597259/91‑1 (MQ=255)

                                                                               aGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTAc            <  2:654026/91‑1 (MQ=255)

                                                                               aGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTAc            <  2:2802357/91‑1 (MQ=255)

                                                                               aGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTAc            <  2:2453166/91‑1 (MQ=255)

                                                                               aGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTAc            >  1:1767385/1‑91 (MQ=255)

                                                                                  gATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACTaa         >  2:1717188/1‑91 (MQ=255)

                                                                                         aTTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACTAATTGTAAt  <  1:125400/91‑1 (MQ=255)

                                                                                         aTTTTTTATTGCTTAATTCAATAAGCTTGATAACTAGACCTATCAATGCAATAAGGAGTAAACCAAACTGCAACATGGTACTAATTGTAAt  >  1:2747946/1‑91 (MQ=255)

AGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACTAATTGTAAT  >  USA300TCH1516_ALE/2090891‑2091070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.