BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2090980	183 (1.040)	14 (0.130) +AATGGTTATTAATTTAATCTTTAATCTAAAATAGC	9/110	12.7	12.0%	intergenic (‑214/+324)	USA300HOU_RS10575/USA300HOU_RS10590	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2265579	155 (0.880)	14 (0.130) +AATGGTTATTAATTTAATCTTTAATCTAAAATAGC	9/110	12.7	12.0%	intergenic (+442/+587)	USA300HOU_RS11590/hin_3	hypothetical protein/DNA‑invertase hin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 155 total aligned reads displayed.

AGCAAAAGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAATCAATAC  >  USA300TCH1516_ALE/2265490‑2265669

aGCAAAAGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAACAAGACGGTGa                                                                                           >  2:2841309/1‑91 (MQ=255)

aGCAAAAGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGa                                                                                           <  2:1908770/91‑1 (MQ=255)

  cAAAAGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGAcc                                                                                         <  1:547033/91‑1 (MQ=255)

  cAAAAGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGAcc                                                                                         >  1:1772563/1‑91 (MQ=255)

  cAAAAGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGAcc                                                                                         <  1:2303551/91‑1 (MQ=255)

  cAAAAGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGAcc                                                                                         >  1:2237569/1‑91 (MQ=255)

   aaaaGATGAAAGTCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCt                                                                                        <  1:2806183/91‑1 (MQ=255)

     aaGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTta                                                                                      <  2:3034047/91‑1 (MQ=255)

     aaGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTta                                                                                      <  1:39176/91‑1 (MQ=255)

       gATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTtata                                                                                    >  1:728475/1‑91 (MQ=255)

        aTGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTatat                                                                                   <  2:2759630/91‑1 (MQ=255)

         tGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTAtatt                                                                                  >  1:1665647/1‑91 (MQ=255)

         ggAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACGCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGAGGGTGACCTTAtatt                                                                                  <  2:2631669/90‑1 (MQ=255)

          gAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTAtattt                                                                                 <  2:1349363/91‑1 (MQ=255)

           aaaaTCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTAtatttt                                                                                >  1:1268691/1‑91 (MQ=255)

           aaaaTCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTAtatttt                                                                                >  1:2091963/1‑91 (MQ=255)

             aaTCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTAtattttat                                                                              <  1:2121949/91‑1 (MQ=255)

             aaTCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTAtattttat                                                                              <  2:2185266/91‑1 (MQ=255)

             aaTCAGTAACTCTTGAAACACAAATAGGGCAACACTCGGAAACATGTTACGCTAATGAGCCCGTTAAAAAGACGGTGACCTTAtattttat                                                                              <  2:2873543/91‑1 (MQ=255)

                cATTAACTCTTGAAACACAAAAATGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATtttattta                                                                           <  2:2362120/91‑1 (MQ=255)

                cATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATtttattta                                                                           >  1:614350/1‑91 (MQ=255)

                   tAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTaaaa                                                                        >  1:2959185/1‑91 (MQ=255)

                    aaCTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTaaaaa                                                                       <  2:1833200/91‑1 (MQ=255)

                     aCTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAAt                                                                      <  2:1051900/91‑1 (MQ=255)

                      ctctTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATa                                                                     >  2:2286861/1‑91 (MQ=255)

                       tctTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAg                                                                    <  1:664766/91‑1 (MQ=255)

                       tctTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAg                                                                    <  2:2216629/91‑1 (MQ=255)

                         ttGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGcc                                                                  <  1:1897643/91‑1 (MQ=255)

                          tGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCt                                                                 >  2:2104951/1‑91 (MQ=255)

                           gAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCtt                                                                >  1:2242904/1‑91 (MQ=255)

                           gAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCtt                                                                >  1:2876323/1‑91 (MQ=255)

                            aaaCACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTc                                                               >  2:1605173/1‑91 (MQ=255)

                             aaCACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCa                                                              <  2:732962/91‑1 (MQ=255)

                             aaCACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCACGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCa                                                              <  1:2457724/91‑1 (MQ=255)

                             aaCACAAAAAGGGCAACACTCGGAAACATCTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCa                                                              <  2:1635620/91‑1 (MQ=255)

                              acacAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCaa                                                             <  1:2760342/91‑1 (MQ=255)

                               cacaAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCaaa                                                            <  2:428140/91‑1 (MQ=255)

                                 acaaaaGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCaaaaa                                                          >  1:155683/3‑91 (MQ=255)

                                    aaaGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGc                                                       <  1:1295657/91‑1 (MQ=255)

                                     aaGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGcc                                                      <  2:1617282/91‑1 (MQ=255)

                                     aaGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGcc                                                      <  1:2318512/91‑1 (MQ=255)

                                     aaGGGCAACACTCGGAAACATGATACCCTAATGAGCCCGTTAACAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGcc                                                      >  2:575219/1‑91 (MQ=255)

                                      aGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCg                                                     >  2:1139919/1‑91 (MQ=255)

                                       gggCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCgg                                                    <  2:1530307/91‑1 (MQ=255)

                                        ggCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGACTTCAAAAATGCCGGt                                                   <  2:1215766/91‑1 (MQ=255)

                                         gCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTc                                                  <  2:2256255/91‑1 (MQ=255)

                                         gCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTc                                                  >  2:1875619/1‑91 (MQ=255)

                                         gCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTc                                                  <  2:1471555/91‑1 (MQ=255)

                                          cAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCa                                                 <  1:1074486/91‑1 (MQ=255)

                                           aaCACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCATTAAAAAATGCCGGTCaa                                                <  2:1816894/91‑1 (MQ=255)

                                             cacTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAg                                              <  1:393404/91‑1 (MQ=255)

                                             cacTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAg                                              >  1:1245337/1‑91 (MQ=255)

                                               cTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCg                                            <  2:1360619/91‑1 (MQ=255)

                                                   gAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATa                                        <  1:1523933/91‑1 (MQ=255)

                                                    aaaCATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAg                                       <  1:1682073/91‑1 (MQ=255)

                                                    aaaCATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAg                                       >  2:35093/1‑91 (MQ=255)

                                                    aaaCATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATACTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAg                                       >  2:2854106/1‑91 (MQ=255)

                                                     aaCATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGa                                      <  1:1665255/91‑1 (MQ=255)

                                                         tGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGt                                  <  2:2588996/91‑1 (MQ=255)

                                                         tGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGt                                  >  1:235667/1‑91 (MQ=255)

                                                         tGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGt                                  >  1:2850779/1‑91 (MQ=255)

                                                          gTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGtt                                 <  2:115122/91‑1 (MQ=255)

                                                          gTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGtt                                 <  1:2101224/91‑1 (MQ=255)

                                                               ccTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTAtttt                            <  2:2485607/91‑1 (MQ=255)

                                                                cTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTAttttt                           <  2:1376413/91‑1 (MQ=255)

                                                                cTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTAttttt                           <  2:647534/91‑1 (MQ=255)

                                                                cTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTAttttt                           <  2:647554/91‑1 (MQ=255)

                                                                 tAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTAtttttt                          >  2:2332084/1‑91 (MQ=255)

                                                                  aaTGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTa                         <  2:2487049/91‑1 (MQ=255)

                                                                    tGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATg                       <  1:1575964/91‑1 (MQ=255)

                                                                     gAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGCTATTTTTTATgg                      <  1:2380200/91‑1 (MQ=255)

                                                                      aGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATgtt                     >  2:887723/1‑89 (MQ=255)

                                                                      aGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGt                     <  1:2110525/91‑1 (MQ=255)

                                                                      aGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGt                     <  1:2698424/91‑1 (MQ=255)

                                                                        cccGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCt                   >  2:734657/1‑91 (MQ=255)

                                                                          cGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTg                 <  2:472273/91‑1 (MQ=255)

                                                                          cGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTg                 <  1:1538338/91‑1 (MQ=255)

                                                                          cGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTg                 <  1:2965129/91‑1 (MQ=255)

                                                                           gTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGa                <  1:1244162/91‑1 (MQ=255)

                                                                            ttAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAg               >  1:2030355/1‑91 (MQ=255)

                                                                             tAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGt              <  2:1785209/91‑1 (MQ=255)

                                                                             tAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGt              <  1:927326/91‑1 (MQ=255)

                                                                             tAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGt              <  1:2622617/91‑1 (MQ=255)

                                                                              aaaaaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTa             >  1:2664788/1‑91 (MQ=255)

                                                                               aaaaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTAc            <  1:2503754/91‑1 (MQ=255)

                                                                               aaaaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTAc            >  1:345595/1‑91 (MQ=255)

                                                                                aaaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACt           <  2:20646/91‑1 (MQ=255)

                                                                                aaaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACt           <  1:1418922/91‑1 (MQ=255)

                                                                                aaaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACt           <  2:807030/91‑1 (MQ=255)

                                                                                 aaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTa          >  2:703189/1‑91 (MQ=255)

                                                                                 aaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTa          >  1:1164148/1‑91 (MQ=255)

                                                                                 aaGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTa          >  1:1062620/1‑91 (MQ=255)

                                                                                   gACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAAt        <  1:1949555/91‑1 (MQ=255)

                                                                                   gACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAAt        >  1:990956/1‑91 (MQ=255)

                                                                                     cGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAATCa      >  1:3063389/1‑91 (MQ=255)

                                                                                     cGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAATCa      <  2:1422258/91‑1 (MQ=255)

                                                                                       gTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAATCAAt    >  2:1586999/1‑91 (MQ=255)

                                                                                        tGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAATCAATa   >  1:119728/1‑91 (MQ=255)

                                                                                         gACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAATCAATAc  >  1:2508174/1‑91 (MQ=255)

                                                                                         gACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAATCAATAc  >  2:2283255/1‑91 (MQ=255)

AGCAAAAGATGAAAATCATTAACTCTTGAAACACAAAAAGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTGACCTTATATTTTATTTAAAAATAGCCTTCAAAAATGCCGGTCAAAGCGAATAGAAGGTTATTTTTTATGGTCTTGAGTACTAATCAATAC  >  USA300TCH1516_ALE/2265490‑2265669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.