New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2442821201 (1.140)26 (0.180) 14/148 13.6 13.7% intergenic (+18/+40) glvR/USA300HOU_RS12585 HTH‑type transcriptional regulator GlvR/hypothetical protein
?USA300TCH1516_ALE = 2442838 164 (1.140)intergenic (+35/+23) glvR/USA300HOU_RS12585 HTH‑type transcriptional regulator GlvR/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 194 total aligned reads displayed.

AACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCA  >  USA300TCH1516_ALE/2442749‑2442928
                                                                                         |                                                                                          
aaCACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTa                                                                                           >  1:2776786/1‑91 (MQ=255)
aaCACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTa                                                                                           >  1:2067472/1‑91 (MQ=255)
 acacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTAt                                                                                          >  2:825846/1‑91 (MQ=255)
 acacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTAt                                                                                          <  1:949125/91‑1 (MQ=255)
 acacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTAt                                                                                          <  2:957950/91‑1 (MQ=255)
  cacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATc                                                                                         <  1:1232376/91‑1 (MQ=255)
   acTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCa                                                                                        >  2:1971138/1‑91 (MQ=255)
    cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCAt                                                                                       >  2:1950673/1‑91 (MQ=255)
      tGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATaa                                                                                     >  2:2861117/1‑91 (MQ=255)
       gTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAAc                                                                                    <  2:1894977/91‑1 (MQ=255)
        tAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACt                                                                                   >  1:1711572/1‑91 (MQ=255)
          aGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTc                                                                                 >  2:2824732/1‑91 (MQ=255)
            aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCt                                                                               <  2:1515366/91‑1 (MQ=255)
            aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCt                                                                               >  2:875074/1‑91 (MQ=255)
            aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCt                                                                               >  2:2050553/1‑91 (MQ=255)
             aaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCtt                                                                              <  2:2438793/91‑1 (MQ=255)
                  taATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATc                                                                         <  2:2935810/91‑1 (MQ=255)
                   aaTGAGTATTTACTACATAATGTTATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCa                                                                        >  2:2163415/1‑91 (MQ=255)
                    aTGAGTATTTAGTACATAGTGATATTTCAAATTAGAAAAAAGGAAGTTATGATGTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  1:1503878/91‑1 (MQ=255)
                    aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       >  2:1427033/1‑91 (MQ=255)
                    aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  1:1501215/91‑1 (MQ=255)
                     tGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtt                                                                      >  2:1570739/1‑91 (MQ=255)
                      gAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAttt                                                                     <  1:3068211/91‑1 (MQ=255)
                       aGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt                                                                    <  2:993188/91‑1 (MQ=255)
                       aGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt                                                                    >  1:1761462/1‑91 (MQ=255)
                        gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                                   <  1:615787/91‑1 (MQ=255)
                         tATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAGGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAt                                                                  <  2:706183/91‑1 (MQ=255)
                          aTTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAtt                                                                 <  1:2832708/91‑1 (MQ=255)
                           tttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttg                                                                <  2:3071988/91‑1 (MQ=255)
                            ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                               <  2:353645/91‑1 (MQ=255)
                              actacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgttg                                                             >  2:1979623/1‑91 (MQ=255)
                               ctacATAATGATATTTCAAATTAGAGAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgt                                                            <  1:214691/91‑1 (MQ=255)
                               ctacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGTCTATCATAACTTCCTTTTATCATTTTATtgttgt                                                            >  2:533987/1‑91 (MQ=255)
                               ctacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgt                                                            <  1:2702027/91‑1 (MQ=255)
                               ctacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgt                                                            <  2:2131209/91‑1 (MQ=255)
                                tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtg                                                           <  2:2741412/91‑1 (MQ=255)
                                tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtg                                                           <  2:1266097/91‑1 (MQ=255)
                                 acATAATGATATTTCAAATTAGAAATAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                          <  1:2872307/91‑1 (MQ=255)
                                 acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                          <  2:399695/91‑1 (MQ=255)
                                 acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                          <  2:367536/91‑1 (MQ=255)
                                  cATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgtt                                                         >  1:2568594/1‑91 (MQ=255)
                                    tAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGa                                                       <  1:2935298/91‑1 (MQ=255)
                                    tAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGa                                                       <  2:2977129/91‑1 (MQ=255)
                                    tAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGa                                                       >  2:2649059/1‑91 (MQ=255)
                                     aaTGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGAt                                                      >  1:516612/1‑91 (MQ=255)
                                      aTGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATg                                                     >  2:1051700/1‑91 (MQ=255)
                                       tGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGt                                                    >  1:2390688/1‑91 (MQ=255)
                                          tatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTc                                                 <  2:643716/91‑1 (MQ=255)
                                          tatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTc                                                 <  2:343266/91‑1 (MQ=255)
                                          tatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAGCATTTTATTGTTGTGTTGATGTTTc                                                 >  1:2883769/1‑91 (MQ=255)
                                           atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                >  2:1705628/1‑91 (MQ=255)
                                           atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                <  1:1839290/91‑1 (MQ=255)
                                            tttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                                               <  2:1120944/91‑1 (MQ=255)
                                            tttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                                               <  1:1336190/91‑1 (MQ=255)
                                              tCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATa                                             <  2:983582/91‑1 (MQ=255)
                                              tCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATa                                             >  1:548434/1‑91 (MQ=255)
                                              tCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTACCATAACCTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATa                                             >  2:972166/1‑91 (MQ=255)
                                                 aaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACg                                          >  2:186925/1‑91 (MQ=255)
                                                 aaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACg                                          <  1:477699/91‑1 (MQ=255)
                                                 aaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACg                                          >  2:1027790/1‑91 (MQ=255)
                                                    tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                                       <  1:1865519/91‑1 (MQ=255)
                                                    tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                                       <  1:1893819/91‑1 (MQ=255)
                                                     aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                      >  2:2720564/1‑91 (MQ=255)
                                                     aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                      <  2:1586779/91‑1 (MQ=255)
                                                     aGAAAAAAGGAAGTTATGATTTAATGCCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                      >  2:1771064/1‑91 (MQ=255)
                                                        aaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACa                                   <  1:107559/91‑1 (MQ=255)
                                                        aaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACa                                   <  1:107509/91‑1 (MQ=255)
                                                         aaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACAt                                  >  2:1171057/1‑91 (MQ=255)
                                                           aaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt                                <  1:1185968/91‑1 (MQ=255)
                                                           aaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt                                >  1:1586811/1‑91 (MQ=255)
                                                            aGGAAGTTATTATTCAATGGCCTCGAGCCTATCATAACTTCCTCTTATCATTTTGTTGTTGTGTTGATGTTTCGATAACGTGGTACATCtt                               <  2:2879606/91‑1 (MQ=255)
                                                            aGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCtt                               >  1:1636028/1‑91 (MQ=255)
                                                                aGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                           >  2:91457/1‑91 (MQ=255)
                                                                aGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                           >  2:1077233/1‑91 (MQ=255)
                                                                 gTTATTATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaa                          <  2:3102642/91‑1 (MQ=255)
                                                                 gTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaa                          >  1:673485/1‑91 (MQ=255)
                                                                 gTTATGATTTAATGGACTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGCTGATGTTTCGATAACGTGGTACATCTTATCaa                          >  1:2642305/1‑91 (MQ=255)
                                                                     tGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACAt                      <  2:2845852/91‑1 (MQ=255)
                                                                      gATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                     <  2:2558071/91‑1 (MQ=255)
                                                                      gATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                     <  2:665219/91‑1 (MQ=255)
                                                                      gATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                     <  2:663786/91‑1 (MQ=255)
                                                                        tttAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCaa                   <  1:1166673/91‑1 (MQ=255)
                                                                        tttAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCaa                   <  1:730690/91‑1 (MQ=255)
                                                                          tAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAtt                 >  2:176502/1‑91 (MQ=255)
                                                                          tAATGGCCTTGAGCCTATCATAACTTCCTTTTAACATATTATTGTTGTGTTGATGTTTCCAGAACGTGGTACATCTTATCAAACATCAAtt                 >  1:2476836/1‑91 (MQ=255)
                                                                           aaTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTc                <  2:1654192/91‑1 (MQ=255)
                                                                              ggCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATTTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaa             <  2:2551398/91‑1 (MQ=255)
                                                                              ggCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaa             <  2:1832021/91‑1 (MQ=255)
                                                                              ggCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGCGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaa             >  2:2388165/1‑91 (MQ=255)
                                                                              ggCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAATGTAGCGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaa             >  2:2389730/1‑91 (MQ=255)
                                                                               gCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaaa            >  2:2627457/1‑91 (MQ=255)
                                                                                ccTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAc           >  1:590282/1‑91 (MQ=255)
                                                                                ccTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAc           >  1:555017/1‑91 (MQ=255)
                                                                                 cTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAcc          <  1:1812272/91‑1 (MQ=255)
                                                                                 cTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAcc          >  2:1809089/1‑91 (MQ=255)
                                                                                  ttGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCa         <  1:2179394/91‑1 (MQ=255)
                                                                                   tGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCAt        <  2:2118887/91‑1 (MQ=255)
                                                                                    gAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATg       <  2:2624270/91‑1 (MQ=255)
                                                                                        cTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAcc   <  1:2615622/91‑1 (MQ=255)
                                                                                         tATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCa  <  2:2568594/91‑1 (MQ=255)
                                                                                         |                                                                                          
AACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCA  >  USA300TCH1516_ALE/2442749‑2442928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.