| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 2334 | 292 (1.220) | 4 (0.010) | 4/254 | 18.5 | 0.56% | intergenic (+114/+54) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 1975 | 1153 (1.160) | intergenic (+208/+118) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 105 total aligned reads displayed.
GCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/2194‑2334‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagtttAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA < NC_012417/1975‑1842 GCTTTTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑AC > 1:167383/1‑135GCTCTTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑AC > 1:59594/1‑135GCTCTTGTTTTTTATGAGGATAAATAAGAAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑AC > 1:384331/1‑135GCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGGGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑AC > 2:292109/1‑135 CTATTGTTTTTTATGAGGATAAATAAGGAACGTCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGGTATTAAGCCGACCAT‑‑TCG‑‑‑ACA > 1:418348/1‑135 CTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACA < 2:608702/135‑1 TATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAA > 2:674790/1‑135 TATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTGACAGACGAATTCCGGCATAGCGTGGGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACca > 2:198130/1‑133 TATTGTTTTTTATGAGAATAAATAAGGAACATCGTATTTATGACGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAA > 1:481449/1‑135 TTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCATACGAATGTCGGCATAGCGTGATCTATTAAGTCGACCAT‑‑TCG‑‑‑ACAAGT < 1:288360/135‑1 TTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGATTGTCTGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGT < 1:187115/135‑1 TTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑CCAAGT > 2:297434/1‑135 TTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGT > 2:653237/1‑135 TTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGT < 2:456159/135‑1 TTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGT < 2:335476/135‑1 ttTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCATGCGAATGTCGGCATAGCGTGAGCTATTAATCCGACCAT‑‑TCG‑‑‑ACAAGTT < 1:364337/133‑1 TGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGTT < 2:120262/135‑1 TGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGTT < 2:424986/135‑1 TGTTTTTTATGAGGATAAATAAGGAACATCATAATTATGACGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTAGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑AAAAGTa > 1:241066/1‑134 TGTTTTTTATGAAGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGAAGTTGAGAAGAACCCTTAACTAAACTTGCAGTCTAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGTT < 1:167799/135‑1 CCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCTTCGTCT‑‑‑GCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT > 2:112021/1‑135 GCAGACGAATGTAGGCATAGCGTGGGCTATTCAGCCGACCAT‑‑TCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATACGTCGTATCTTTTTTATTATATTCATGATAATC > 2:396149/1‑135 AGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATT > 2:507582/1‑135 AGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTC < 1:507582/135‑1 gttcCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAA < 1:561454/131‑1 gtAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 2:516026/133‑1 gaAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAA < 1:144882/133‑1 cacGTTTAGTTAAGGGTACTTCACAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCTTCAAAAGCATCATCTTTATAGAAAAACAAA > 1:133234/4‑135 CAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA < 2:649407/135‑1 CAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA > 1:258391/1‑135 CAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATAATCTTTATAGCAAAACAAA > 2:202290/1‑135 CAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCAAAATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA > 1:175752/1‑135 CAAGTTTAGTTAAGGGTTCTTATCAACATCAATAAATTTTCTCGGCATAAATGCATCGTCTATTTTTTATTATCTTCATGAGAATCAGATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA > 1:54754/1‑135 CAAGTTTAGTTAAGGATTCTACTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAA > 1:450352/1‑135 aacgTTAGTTAAGAATTCTTAGAAAAATCAATAAATTTTCTCGCCATAAATGCCTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCTTCAAAATCATCATCTTTATAAAAAAAAAAAA < 2:632473/131‑1 aaaTTTAGTTAAGGGTTCTTCTCAACATTAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA < 2:579312/132‑1 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCGCTCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 2:174725/1‑135 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAATAGCATCATCTTTATAGAAAAACAAAA > 2:324046/1‑135 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATTATCTTTATAGAAAAACAAAA < 1:58079/135‑1 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 2:657662/1‑135 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 1:579424/1‑135 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 1:579817/1‑135 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA < 1:59054/135‑1 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 1:124931/1‑135 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 1:13159/1‑135 AAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA < 1:175738/135‑1 AAGTTTAGTTAAGGGTTCTTCACAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 1:509501/1‑135 AAGTTTAGTTAAGGGTACTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA > 1:151297/1‑135 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAATAGCATCATCTTTATAGAAAAACAAAAA < 1:524229/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAATAGCATCATCTTTATAGAAAAACAAAAA < 1:569309/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:363467/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:276352/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:50038/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:503169/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:608019/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:141516/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:256360/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTCTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:401662/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTACTTTTTATTATCTTCATGATAATCACATTTTTCTTCCATCTCGTCAAAAGCCTCATCTTTATAGAAAAACAAAAA < 1:377282/135‑1 AGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGAATAGCGTCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA < 1:263936/135‑1 AGTTTAGTTAAGGGTTCTTCCCAACATCAATAAATTTTCTCGGCCTAAATGCGTAGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAACAGCATCATCTTTATAGAAAAACAAAAA > 2:257353/1‑135 AGTTTAGTTAAGGGTTCTTCACAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA > 1:539374/1‑135 GTTTAGTTAGGGGTTCTTCTCAACATAAATAAATTTTCTCTGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG < 2:63404/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGTATTATTTTTATAGAAAAACAAAAAG < 1:153874/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATTATTTTTATAGAAAAACAAAAAG < 1:195313/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATTATCTTTATAGAAAAACAAAAAG < 1:370781/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATTATCTTTATAGAAAAACAAAAAG < 1:87292/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCTTCTTTATAGCAAAACAAAAAG < 1:337786/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG < 1:1925/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG < 2:347291/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG < 2:257255/135‑1 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG > 2:267501/1‑135 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG > 1:479439/1‑135 GTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGAGTCGTCTATTTTTTATTATCTTCATGTTAATCAGTGTGTTCTGTCATCGCGTCAAAAGCATCATCTTTATCGAAAAACAAtatg > 2:110313/1‑131 GTTTAGTTAAGGGTTCTTCTCAACATACATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG < 2:160377/135‑1 GTTTAGTTAAGGGTTCTTCTCAACACCAATAAAGTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG < 1:482746/135‑1 GTTTAGTTAAGGGTTCTTCTCAACAACAATAAATTTTCTCGCCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAAAAAAAAAAAAAG < 2:485112/135‑1 GTTTAGTTAAGGGTTCTTATAAAAATCAAAAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATCATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAAAAAAAAG < 2:261730/135‑1 GTTTAGTTAAAGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCATCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATGTTTATAGAAAAACAAAAAG > 1:464533/1‑135 GTTCAGTTAAGGGTTCTTCTCAACTTCAATAAATTTTCTCGTCATATATGCGTCGTCTATTTTTTATTATCTTCATGATAGTCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAG < 2:122693/135‑1 TTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCTTTTTTATAGAAAAACAAAAAGT < 1:154556/135‑1 TTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGg < 1:39561/135‑2 TTTAGTTAAGGGTTCTTCTCAACATCAATAAATTGTCTCGGCATAAACGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAtt < 2:235175/135‑3 TTTAGTGAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCCTATTTTCCTCCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGT < 2:527986/135‑1 TTTAGCTAAGGGTTCTTCTTATCATGAATAAATTTGCTCGGGATAAATGTGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATGTCGTTAAAAGCATTATGTTTATAGAAAAACAAAAAGT < 1:650355/135‑1 TTAGTTAAGGTTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCTTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA < 1:174725/135‑1 TTAGTTAAGGGTTCTTCTCTACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGTATTATCTTTATAGAAAAACAAAAAGga < 1:193286/135‑3 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATTATAATCATATTTTTCTTCCATCTCGTCAATAGCATCATCTTTATAGAAAAACAAAAAGTA < 1:27144/135‑1 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCTATCTCGTCAAAAGTTTTATCTTTATAGAAAAACAAAAAGTA < 1:118121/135‑1 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCTATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA < 1:295125/135‑1 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCTAAAGCATCATCTTTATAAAAAAACAAAAAGaa > 2:498132/1‑133 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATTTTTTTTATATAAAAACAAAAAGTA < 1:461786/135‑1 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA < 1:177332/135‑1 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA < 2:463721/135‑1 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA < 1:424961/135‑1 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA < 1:541380/135‑1 TTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATCTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTA < 1:394076/135‑1 TAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA < 1:191491/135‑1 TAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA < 1:463000/135‑1 TAGTTAAGGCTTCTTCACAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA > 1:293321/1‑135 GCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAT‑‑TCG‑‑‑ACAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/2194‑2334‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagtttAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA < NC_012417/1975‑1842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |