New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	2365 =	282 (1.180)	4 (0.010)	4/252	18.5	0.56%	intergenic (+145/+23)	USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004	hypothetical protein/hypothetical protein
	?	NC_012417	1955 =	1167 (1.180)					intergenic (+188/+138)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGGACTTTATGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/2506‑2365 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttattgaTGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATA  >  NC_012417/1955‑2088                                                                                                                                                                                                                                                                                      CTGGACTTTATGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTT                                                                                                                                               <  1:402585/135‑1  TGGACTTTATGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTT                                                                                                                                              >  2:478138/1‑135      CTTTATGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCAGGCGGTGTATGTGAAGGAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATT                                                                                                                                          >  2:480385/1‑135      CTTTATGCATGTGCTCACTACTGTAGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAGTTGTTTTATT                                                                                                                                          >  1:17172/1‑135       TTTATGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATTCTCTGTAGTTTGATTTTATTCCAATTGTTTTATTG                                                                                                                                         <  1:209545/135‑1        TTATGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGA                                                                                                                                        >  1:112832/1‑135        TTATGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGA                                                                                                                                        >  1:410394/1‑135        TTATGCATGTGCTCACTACTGTGAAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGCTGATTTTATTCCAATTTTTTTATTGA                                                                                                                                        >  1:38334/1‑135           TGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCCCTGTAGGTTGATTTTATTCGGATTGTTTTATTtactt                                                                                                                                     >  2:239835/1‑130                                  TATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGATGTTGAGAAGAACCCTTAACTAAACT                                                                                                              >  1:512055/1‑135                                           TCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGA                                                                                                     >  1:715/1‑135                                                                                                           CTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCC                                     <  2:512055/135‑1                                                                                                                                gttgatTTTTATTGATGTTGGTGAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGC                <  2:136723/129‑1                                                                                                                                     aataTATTGATGTTAAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAATGTTAATAAAGCAATTG           <  1:82298/131‑1                                                                                                                                      atgTATTGATGGTGAGAAGAACCCTTAACTAAACTGTCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACAATTCGACAAGTTTTGGGATTGTTACGGGTTCCGAGACTCAACGTCAATAAAGCAATGGG          <  2:26741/132‑1                                                                                                                                      atcTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGATGCTCAACGTCAATAAAGCAATTGG          <  2:18811/132‑1                                                                                                                                       TTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGA         >  2:421247/1‑135                                                                                                                                       TTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGA         >  1:155313/1‑135                                                                                                                                       TTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGA         <  2:483076/135‑1                                                                                                                                       TTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTGGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGA         >  2:160515/1‑135                                                                                                                                        cTATTCATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA        <  1:605525/134‑1                                                                                                                                        TTATTGATGTTGAGAAGAGCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGGGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA        >  2:284461/1‑135                                                                                                                                        TTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTTTATGTTAATAAAGCAATGGGAA        <  1:504750/135‑1                                                                                                                                        TTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA        >  2:404201/1‑135                                                                                                                                        TTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA        <  2:552198/135‑1                                                                                                                                        TTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA        >  2:235516/1‑135                                                                                                                                        TTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAAAAATCAATTGGAc        >  2:163716/1‑134                                                                                                                                        TTATGGATGTTGAGAAGAACCCGTAACTAAACTTGCATACGAATGTCTGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAATGGTTCCGAGTCTCAACGTCAATAAAGCAATTGGAA        <  2:125564/135‑1                                                                                                                                         tatatATGTTGAGAAGAAGTCCAAACTTAACTTGCAGACGAATGCTGGTGTAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGGTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       <  2:212405/130‑1                                                                                                                                         tagTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCCATAAAGCAATTGGAAT       >  1:362515/4‑135                                                                                                                                         TATTGATGTTGGGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGTTTTGGAATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATCGGAAT       >  2:200816/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTACACTGGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCCCAACGTCAATAAAGCCATTGGAgt       >  2:175609/1‑133                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       >  1:646147/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       >  1:627282/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       >  2:37820/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       >  1:535294/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       <  2:45229/135‑1                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       <  1:303300/135‑1                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       >  2:484358/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       >  2:484390/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       >  2:560150/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAACCAATTGGAAT       >  2:359511/1‑135                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGGCAATAAAGCGATggtagg       >  2:105979/1‑129                                                                                                                                         TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTAGGGATATCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTTATCGTCAATAAAGCAATCGGAAT       <  1:449626/135‑1                                                                                                                                         TATTGATGTTGAGAAGAACCCATAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAAT       >  1:382874/1‑135                                                                                                                                          ATTGATGTTGAGAATAACCCTTAACTAAACTTGCAGACGTATGTTGACATAGCGTTAGCTATTAAGCCGACCATTCGACAAGTTTTGGTATTGTTAAGGTTTCCGAGTCTCAACTTCAATAAAGCAATTGGAATA      <  1:320680/135‑1                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCCTAGCGTGAGCTATTAAGCCGACCATTCGACAAGTCTTGGGATTGTTACGGGTTCCGCGGCTCAACGCCAATAAAGCGATTGGAcaa      >  2:627978/1‑132                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGTCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  1:175020/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTTACGTTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      <  1:100034/135‑1                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      <  2:654545/135‑1                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  2:349297/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      <  2:332846/135‑1                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  2:272393/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  2:464610/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      <  1:374631/135‑1                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  1:64652/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      <  1:666846/135‑1                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  1:676805/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCCACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      <  2:502901/135‑1                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTAGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  2:441429/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGAGCGCTATTAAGCCGACCATTCGGCAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  2:40394/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAAAAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      >  1:619799/1‑135                                                                                                                                          ATTGATGTTGAGAAGAACCCTTAACTAAACATGCAAACGAATATCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGAAATTGGAAaa      >  1:216069/1‑133                                                                                                                                          ATTGATGTTGAGAAAAACCCTTAACTAAAGTTGCAGAGGAATGGCGGCATAGCGTGTGCGATAAAGCAGACCATTCGATAAGTTTAGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCGATTGGAATA      >  1:472814/1‑135                                                                                                                                          ATTGATGTTGAAAAGAACCCTTAACTAAACGTGCAGACGAATGTCGGCATAGAGTGAGCTATTAAGCCGACCATTCGACAAGTTTGGGGATTGTTAAGGGGTCAGAGGCTAAACGTCAATAAAGCAAATGGAATA      >  2:388715/1‑135                                                                                                                                          ATTGATGTTCAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      <  1:281002/135‑1                                                                                                                                          ATTGATGTGGAGAAGAACCCTTAACTAAACTGGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATA      <  2:368971/135‑1                                                                                                                                           taGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATAAAGCCGACCATTCGACAAGTTCTGGGATAGTTAAGGGTTCCGAGCCTCAACGTCAATAAAGCAATTGGACTAA     >  2:324321/3‑135                                                                                                                                           TTGTTGTTGAGAAAAACCCTTAACTAAAATTGCAGAAGAATGTCGGCATAACGTGAGCTATTAAGCCGACCATTCGACAAGTTTAGGGCTTGTTAAGGGTTACGAGGCTCAACATCAATAAAGCAATTGGAATAA     >  1:563886/1‑135                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAA     >  2:622836/1‑135                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAA     <  1:526534/135‑1                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAA     <  2:521468/135‑1                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAA     >  2:212175/1‑135                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAA     >  1:329499/1‑135                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAACCAACCATTCAACAAGTTTTGGGATGATTAAGCGTTCCGAAGCGCCAAGTCAATATAGAAATTGGAATAA     >  1:426108/1‑135                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGAGTAAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGACTAA     >  2:371071/1‑135                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACTAAACTTCCAGACGAAGGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAGTGGAATAA     <  2:616600/135‑1                                                                                                                                           TTGATGTTGAGAAGAACCCTTAACAAAAATTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGATCAACGTCAATAAAGCAATTGGAATAA     >  1:153180/1‑135                                                                                                                                           TTGATGTTGAGAAAAACCCTTAACTAAACTTGAAGACGAATAACGGAATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAA     >  1:98403/1‑135                                                                                                                                           TTGAAGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGACGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAA     >  2:373048/1‑135                                                                                                                                            TGATGTTGCGAAGAACCCTTACCTAAACTTGCAGGCCACTGACGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGTGATTGTTTATGGTTCCGAGGCTCATCGTCAATAAAGCAATTGGAATAAA    <  1:327545/135‑1                                                                                                                                            TGATGTTGCGAACAACCCTTAACTAAACTTGCAGACGACTGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCTACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA    <  2:178594/135‑1                                                                                                                                            TGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA    >  1:455621/1‑135                                                                                                                                            TGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA    >  1:197052/1‑135                                                                                                                                            TGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA    >  2:611652/1‑135                                                                                                                                            TGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA    >  2:290464/1‑135                                                                                                                                            TGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA    <  2:419921/135‑1                                                                                                                                            TGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGGTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA    >  1:575383/1‑135                                                                                                                                            TGATGTTGAGAAGAACCCTGAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA    >  2:338882/1‑135                                                                                                                                             GATGTTGAGAAGAACCCTTAACTAAACTTGCAGATGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAT   <  1:648772/135‑1                                                                                                                                             GATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTTAACGTCAATAAAGCAATTGGAATAAAT   <  1:161058/135‑1                                                                                                                                             GATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAT   >  1:87621/1‑135                                                                                                                                              ATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATA  >  1:629366/1‑135                                                                                                                                              ATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATA  >  1:323397/1‑135                                                                                                                                              ATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATA  >  1:315535/1‑135                                                                                                                                              ATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATA  >  2:145608/1‑135                                                                                                                                              ATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATA  <  2:64461/135‑1                                                                                                                                              ATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGCGAGCTATTAAGCAGACCATGCAACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCCCAAAGTCAATAAAGCAATTGGAATAAATA  >  2:149231/1‑135                                                                                                                                              ATGGTGAGAAGAACCCTAAACTAACCTTGCCGACGAATGTCGGCATAGCGTGAGCTATTCAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCTATAAAGCAATTGGAATAAATA  <  1:28303/135‑1                                                                                                                                                                                                                                                                                      CTGGACTTTATGCATGTGCTCACTACTGTGGAGTATGGGCAATCGTAAATCCAATAGCCGGCGGTGTATGTGAAGCAGTTTGCGGAACTGCATTTGCAGCTGGATGCTCTGTAGGTTGATTTTATTCCAATTGTTTTATTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/2506‑2365 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttattgaTGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATA  >  NC_012417/1955‑2088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.