BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	2365 =	282 (1.180)	4 (0.010)	4/252	18.5	0.56%	intergenic (+145/+23)	USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004	hypothetical protein/hypothetical protein
*	?	NC_012417	1955 =	1167 (1.180)	4 (0.010)	4/252	18.5	0.56%	intergenic (+188/+138)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1186 total aligned reads displayed.

TATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAG  >  NC_012417/1821‑2089

 aTTCCTATTTTTGTTGTTGCTTACTTTTTTTTTTTCTATAAATATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATg                                                                                                                                       <  1:423567/135‑1 (MQ=255)

 aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATg                                                                                                                                       >  1:55642/1‑135 (MQ=255)

    ccTATTGGTGTTGTTGATTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGTATTTATGCCGAGTAAATTTATTGATGTTg                                                                                                                                    <  1:502350/135‑1 (MQ=255)

     cTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgg                                                                                                                                   <  2:128280/135‑2 (MQ=255)

       aTTGGTGTTGTTGCTTACTTTTTGTTTTTATATAAAGATGATGATTTTGCAGAGATGGAAGAAAAATTTGATTATCATGAAGATATTAAAAAATAGACGACGCATAACTACCGAGAAAATTAATTGATGTTgaaa                                                                                                                                 >  2:170214/1‑133 (MQ=255)

          ggTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGCAGAATTTATGCCGAGAACATTTATTGATGTTGagaaga                                                                                                                              <  2:30930/135‑1 (MQ=255)

            tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGTTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGTCTCATTTATTTCGATATAATTTATTGATGTTGAGAAGAAc                                                                                                                            <  1:176540/135‑1 (MQ=255)

              ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGGAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAAAAGAAccc                                                                                                                          >  2:632629/1‑135 (MQ=255)

               tgttgCTTACTTTTTTTTTTTTTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATGGACGCCGCATTTATGCCGAGAAAATTTATTGATGTTTCGAAGAActct                                                                                                                         >  2:228633/1‑135 (MQ=255)

                  tgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTaa                                                                                                                      >  2:238115/1‑135 (MQ=255)

                  tgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATATTGAGAAGAACCCTTaa                                                                                                                      >  1:359619/1‑135 (MQ=255)

                   gCTGACTTTTTTTTTTTCTATAAATATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGATCCCTTAAc                                                                                                                     <  2:338912/135‑1 (MQ=255)

                    cTTACTTTTAGTTTTTGTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATAGGATTATCATGAAGATAGTAAAAAATAGACGGCGCAGTTATGCCGAGAAAATTTATTGAAGTTGAGAAGAACCCTTAACt                                                                                                                    >  2:411569/1‑135 (MQ=38)

                      tACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                  >  2:463721/1‑135 (MQ=255)

                        cTTTTTGTTTTTCTATAAAGATAATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAAc                                                                                                                >  1:87292/1‑135 (MQ=255)

                         tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                               >  1:608019/1‑135 (MQ=255)

                         tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGACGCTATTCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                               >  1:263936/1‑135 (MQ=38)

                         tttttGTTTTTCTATAAAGATGATGCTATTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                               >  1:524229/1‑135 (MQ=255)

                         tttttGTTTTTCTATAAAGATGAGGCTTTTGACGAGATGGAAGAAAAATGTGATTATCATGAAGATAATAAAAAGTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                               >  1:377282/1‑135 (MQ=255)

                          ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACtt                                                                                                              <  1:579817/135‑1 (MQ=255)

                           tttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTg                                                                                                             >  1:437831/1‑135 (MQ=255)

                           tttGTTTTGCTATAAAGATTATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTg                                                                                                             <  2:202290/135‑1 (MQ=255)

                            ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATGTGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTCTTAACTAAACTTGc                                                                                                            <  1:148220/135‑1 (MQ=255)

                            ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGTGTAGAATCCTTAACTAAACTTGc                                                                                                            <  1:217344/135‑1 (MQ=255)

                              gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAGATTTTATTTATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                                                          <  1:240077/135‑1 (MQ=255)

                               tttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGTGAAGATCCCTTATCTAAACTTGCAGa                                                                                                         <  1:287236/135‑1 (MQ=255)

                               tttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                         <  1:36581/135‑1 (MQ=255)

                               tttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                         >  2:486418/1‑135 (MQ=255)

                               tttttCTATAAAGATGATGCTTTTGACGAAATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                         >  1:47927/1‑135 (MQ=255)

                                ttttCTATAAAGATGATGCTTTTGACGAGATCGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGGTGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                        <  1:396449/135‑1 (MQ=255)

                                       ttaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATTCCTAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                 >  2:34813/3‑135 (MQ=255)

                                       taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAACTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                 <  1:98457/135‑1 (MQ=255)

                                       taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTTTTAACTAAACTTGCAGACGAATGTc                                                                                                 <  1:593054/135‑1 (MQ=255)

                                       taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTAATGTTGAGAAGAACCCGTAACTATAATTGCAGACGAAGGTc                                                                                                 >  2:674794/1‑135 (MQ=255)

                                        aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGATCTCTTAATTAAACTTGCAGACGAATGTCg                                                                                                <  1:627155/135‑1 (MQ=255)

                                          aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                              <  1:225480/135‑1 (MQ=255)

                                          aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                              <  1:195145/135‑1 (MQ=255)

                                          aGATGATGCTTGTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTTAGAAGAACCCTTAACTAAACTTGCAGACGAATggcggc                                                                                              <  1:490540/135‑1 (MQ=255)

                                           gatgatGCTTTTGACGAGATGGAAGAAAAATATGATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGATCCCTTAACTAAACTTGCAGACGAATGTCGGCa                                                                                             <  2:282597/135‑1 (MQ=255)

                                            atgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                            >  1:661473/1‑135 (MQ=255)

                                              gatgCTTGTGGCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                          <  2:119940/135‑1 (MQ=255)

                                              gaagCTTTTGACGAGACGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                          <  2:358428/132‑1 (MQ=255)

                                               atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                         >  2:475911/1‑135 (MQ=255)

                                               atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                         >  1:329710/1‑135 (MQ=255)

                                                tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAATCCTTATCTAAACTTGTTGACGAATGTCGGCATAGCg                                                                                        <  1:482781/135‑1 (MQ=255)

                                                tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                                                        >  1:72668/1‑135 (MQ=255)

                                                   ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                                     <  1:570181/135‑1 (MQ=255)

                                                   ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTAGGCATAGCGTgg                                                                                     >  2:87850/1‑134 (MQ=255)

                                                    tttGACGAGATGGAAGAAAAATATGATTAACATGAAAATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                                    >  1:31942/1‑135 (MQ=255)

                                                      tGACGAGCTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCt                                                                                  >  1:272066/1‑135 (MQ=255)

                                                         cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAACCTGAGcactc                                                                               >  2:10603/1‑131 (MQ=255)

                                                            gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                                                            >  1:255314/1‑135 (MQ=255)

                                                             attgaagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                           <  2:449118/132‑1 (MQ=255)

                                                             aTGGAAGAAAAATATGATTAACATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                           >  1:1247/1‑135 (MQ=255)

                                                               ggAAGAAAAAGAGGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                         <  2:330212/135‑1 (MQ=255)

                                                                    aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAt                                                                    <  2:143153/135‑1 (MQ=255)

                                                                    aaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAt                                                                    <  1:649587/135‑1 (MQ=255)

                                                                     aaaaaaTGATTATCATGAAGATAATAAAAAATAAAAGACGAATTTAAAACAAAAAAATTTCTTAAAGAGTAGAAGAACACTTAACTAAACTAACAGACGAATTACTGCATAGCGTGAGCTATTAAGCCGACCAtt                                                                   >  1:457645/1‑135 (MQ=12)

                                                                      aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTc                                                                  >  1:675041/1‑135 (MQ=255)

                                                                      aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTc                                                                  >  1:189409/1‑135 (MQ=255)

                                                                      aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTc                                                                  <  1:1009/135‑1 (MQ=255)

                                                                          atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACa                                                              <  1:546257/135‑1 (MQ=255)

                                                                          atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACa                                                              <  2:160079/135‑1 (MQ=255)

                                                                           tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACaa                                                             <  2:73747/135‑1 (MQ=255)

                                                                             aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGTTATTAAGCCGACCATTCGACAAGt                                                           <  1:234313/135‑1 (MQ=255)

                                                                             aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                           <  2:586169/135‑1 (MQ=255)

                                                                                    tGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAACCCGTTCATTCGACATGTTTTGGGa                                                    <  1:298524/135‑1 (MQ=255)

                                                                                      aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCTTGTGTTATTAAGTCGATTATTTGACAAGTTTTGGGAtt                                                  <  1:157675/135‑1 (MQ=17)

                                                                                      aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAtt                                                  <  2:536952/135‑1 (MQ=255)

                                                                                        gATAATAAAAAATAGATCACGCCTTGATGCCGTGTAAATTTATTGATGTTGAGAAGATTCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                                <  2:545542/135‑1 (MQ=14)

                                                                                          taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTa                                              >  1:515861/1‑135 (MQ=255)

                                                                                           aataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTaa                                             <  2:503169/135‑1 (MQ=255)

                                                                                             taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                           <  1:636934/135‑1 (MQ=255)

                                                                                             taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                           <  1:40840/135‑1 (MQ=255)

                                                                                              aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                          >  2:292071/1‑135 (MQ=255)

                                                                                                aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCTGACTATTCGACAATTTTTGGGATTGTTAAGGGtt                                        <  1:16707/135‑1 (MQ=255)

                                                                                                aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGCTTGATAAGGGtg                                        >  2:566902/1‑134 (MQ=255)

                                                                                                aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGtt                                        <  2:437831/135‑1 (MQ=40)

                                                                                                  aaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                      <  2:645352/135‑1 (MQ=38)

                                                                                                   aTAGACGACGCATCTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACCAGTTTTGGGATTGTTAGGGGttgct                                     >  2:424637/1‑132 (MQ=255)

                                                                                                    tAGACGACGCAGTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGa                                    <  2:618454/135‑1 (MQ=37)

                                                                                                         gacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                               <  1:353524/135‑1 (MQ=33)

                                                                                                         gacgCATCTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGccc                               >  2:273151/1‑133 (MQ=18)

                                                                                                            gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                            <  1:388036/135‑1 (MQ=32)

                                                                                                             cacttATGCCGAGAAATTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTTTTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                           <  2:398939/132‑1 (MQ=12)

                                                                                                              attttggCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATGAAGCCGGCCATTCGACAAGTTTTGGGATTGTTAACGGTTCCGAGGCTCAACGt                          <  2:257390/129‑1 (MQ=11)

                                                                                                              aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACATGCAGACGAATGTCGGCATAGCGTGAGATATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                          >  2:386333/1‑135 (MQ=17)

                                                                                                                ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTTGGTTTGTTATTGGTTCCGAGGCTCAACGTCa                        <  1:31002/135‑1 (MQ=255)

                                                                                                                ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCa                        <  2:366745/135‑1 (MQ=32)

                                                                                                                 tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa                       <  2:661473/135‑1 (MQ=32)

                                                                                                                 tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAACATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTaaa                       <  2:600751/135‑1 (MQ=17)

                                                                                                                   tGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa                     <  1:538491/135‑1 (MQ=32)

                                                                                                                   tGCCGAGAAAATTTATTGATGATGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGATTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa                     >  1:109871/1‑135 (MQ=17)

                                                                                                                   tGCCGAGAAAATTTATTGATATTGAGAAAAACCCTTAACTAAACTTGCAGAAGAATTTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa                     >  1:616011/1‑135 (MQ=255)

                                                                                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa                    >  2:523701/1‑135 (MQ=33)

                                                                                                                    gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa                    >  2:191220/1‑135 (MQ=33)

                                                                                                                     ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                   >  1:136137/1‑135 (MQ=32)

                                                                                                                        agaAAATTTATTTATGTTGACAAGAACCCTTAACTAAACTTGCAGACGAATGTTGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTTTTAAGGGTTTCTAGGCTCAACGTCAATAAAGCa                <  1:203616/135‑1 (MQ=11)

                                                                                                                        agaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACTTCAATAAAGCa                <  1:337883/135‑1 (MQ=14)

                                                                                                                        agaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                <  1:464868/135‑1 (MQ=31)

TATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAG  >  NC_012417/1821‑2089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.