New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	37094 =	77 (1.350)	4 (0.080)	4/248	5.2	5.3%	intergenic (+118/‑719)	USA300HOU_RS14915/ugpQ_1	hypothetical protein/Glycerophosphodiester phosphodiesterase, cytoplasmic
	?	USA300TCH1516_ALE	37188 =	72 (1.360)					intergenic (+212/‑625)	USA300HOU_RS14915/ugpQ_1	hypothetical protein/Glycerophosphodiester phosphodiesterase, cytoplasmic
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGAGAAATAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTAT  >  USA300TCH1516_ALE/36966‑37228                                                                                                                                 |                                                                                                                                       tAGAGAAATAAACTAGTGGCCGAGTGTTCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGGTATGCTTCTATCTGTATCTTACGAtttt                                                                                                                                  <  2:435089/135‑1 (MQ=255)      aaaTAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACg                                                                                                                             >  1:631102/1‑135 (MQ=255)         tAAACTATTGTCCGATTGTCCTTGATGAGCTTGCGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACATTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGc                                                                                                                          <  2:652372/135‑1 (MQ=255)         tAAACTAGTGGCCGATTTTGCTTGATGAGCTTGGGAAAAAAAGCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTTATATGCTTATTTTTTTATCTTACGATTTTGTACGTGc                                                                                                                          <  1:45046/135‑1 (MQ=255)            aCTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTATAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATg                                                                                                                       >  2:671089/1‑135 (MQ=255)            aCTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATTTTACTTTTTTGTACTTGCATg                                                                                                                       >  2:604040/1‑135 (MQ=255)            aCTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATg                                                                                                                       >  1:543601/1‑135 (MQ=255)            aCTAGTGGCCGATTGTGCTTGATGAGCTTGGGACACAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATg                                                                                                                       >  2:401880/1‑135 (MQ=255)            aCTAGGGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATg                                                                                                                       >  2:54880/1‑135 (MQ=255)               aGTGGCCGATTGTGCTTGATGAGCATGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATGTTTTTATCTTACGATGTTGTACGTGCATGCtt                                                                                                                    >  1:407406/1‑135 (MQ=255)                gTGGCCGGTTGTGCTTGATGAGGTTGTGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACATTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCGTg                                                                                                                   <  1:170558/135‑1 (MQ=255)                gTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTGGAAATAAATAAGCATAGCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCtgc                                                                                                                   >  2:75582/1‑133 (MQ=255)                 tGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGc                                                                                                                  >  2:541401/1‑135 (MQ=255)                 tGGCCGATTGCCGATGATAAGCTGGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTGACAGTGATATGCTTATTTTTTTATCTTACATTTTTGTACGGTCATGCTTGc                                                                                                                  >  2:642968/1‑135 (MQ=255)                  ggCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGcc                                                                                                                 >  1:540925/1‑135 (MQ=255)                     cGATTGTGCTTGATGAGCTTGAGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAg                                                                                                              <  1:355408/135‑1 (MQ=255)                      gATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAgg                                                                                                             <  2:440703/135‑1 (MQ=255)                      gATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAgg                                                                                                             <  1:648643/135‑1 (MQ=255)                        ttGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCGAgggg                                                                                                           <  1:629873/135‑1 (MQ=255)                                 atgaGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGATTATTTTTTTATCTTATGGTTTTGTACGTGCATGCTTGGCTAGGGGTCTggtttg                                                                                                  >  2:379824/1‑131 (MQ=255)                                       ttGGGCCATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCAt                                                                                            <  2:630021/135‑1 (MQ=255)                                        tGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCAtt                                                                                           >  1:612093/1‑135 (MQ=255)                                        tGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCAtt                                                                                           >  1:245555/1‑135 (MQ=255)                                          ggACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAg                                                                                         >  1:351497/1‑135 (MQ=255)                                                  aaccTAACTCGAAATAAATAAGCATAGCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATTTTTCGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTATCGc                                                                                 <  2:187691/133‑1 (MQ=255)                                                               ataaataaGCATATCACTAAACTGATTTTTTAAAGCTTACCGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGCAATGGCTCGAGCCATTCGTCTCTCGCACAAACTACTcac                                                                    >  2:184082/1‑133 (MQ=255)                                                                   ataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAg                                                                <  1:516228/135‑1 (MQ=255)                                                                   ataaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAg                                                                >  1:425869/1‑135 (MQ=255)                                                                    taaGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTTTCTTTTTATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCTAGCCAGTAGTCTCTCGCGCATACTTTTCCCTccgc                                                               >  2:394820/1‑132 (MQ=255)                                                                      aGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCg                                                             <  1:61596/135‑1 (MQ=255)                                                                       gCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGt                                                            >  1:628943/1‑135 (MQ=255)                                                                       gCATATCACTAAACTGATATAAAAAAGATTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGt                                                            >  1:141490/1‑135 (MQ=255)                                                                         atatCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCa                                                          <  1:89513/135‑1 (MQ=255)                                                                           atCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGTATATACTATTCCCTCAGGCGTCAGc                                                        <  1:331745/135‑1 (MQ=255)                                                                            tcccTAAACTTATTTTTTAAAGTTTACTGTGATATGCTTATTTTTTTACCTTACGATTTTGTACGTGCATGCTTTCCTTGGTGTATGGTTCGAGCTATTAGTCTGTCGCACATACTATTCCATCAGGCGTCAGCa                                                       <  1:224142/132‑1 (MQ=255)                                                                            tCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTTGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCa                                                       <  1:413717/135‑1 (MQ=255)                                                                            tCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCa                                                       <  1:456341/135‑1 (MQ=255)                                                                             cACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCAc                                                      >  1:534953/1‑135 (MQ=255)                                                                             cACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCCCAGGCGTCAGccc                                                      >  1:627178/1‑133 (MQ=255)                                                                             cACTAAACTGATTTTTTAAAGTTGAAAATGAAATGATGATTTTTTTATCTTACGATTTTGTCAGTGCATGCTTGCGTAGGGGTATGGCTCGCGACATTAGTCTATCACACATCCTCTTCCCTCAGGCGTGCGCAc                                                      >  2:44997/1‑135 (MQ=255)                                                                                 aaaCTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCTAGGCGTTAGTCTCTCGCTCCTACTATTCCCTCAGGCGTCCGACCTTAc                                                  >  2:349196/1‑135 (MQ=255)                                                                                 aaaCGGATTTTTTAAAGTTAACAGTGATATGCTTATTTTTTTATCTTACGAATTTTTACGTGCAGTCTTGCCTAGGGGTATGGCTAGAGCGATTAGTCTCTCGCACATACTATTCCCTCAGGCGGCAGCACTTAc                                                  >  1:457368/1‑135 (MQ=255)                                                                                  aaCTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTAAGGCTCGAGCCATTAGTCTCACGCACATACTATTCCCTCAGGCGTCAGCACTTACa                                                 >  2:328353/1‑135 (MQ=255)                                                                                   aCTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACaa                                                >  2:405733/1‑135 (MQ=255)                                                                                     tGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCTCTCAGGCGTCAGCACTTACaaaa                                              <  1:5399/135‑1 (MQ=255)                                                                                      gcttttttAAAGATTACAATAATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAAt                                             >  1:293994/3‑135 (MQ=255)                                                                                      gATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAAt                                             >  1:158993/1‑135 (MQ=255)                                                                                       aTTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATc                                            <  2:188384/135‑1 (MQ=255)                                                                                          ttttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACCATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCATGCGTCAGCACTTACAAAAACGGt                                         <  1:15877/135‑1 (MQ=255)                                                                                            ttAAAGTTTACATTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCATGCGTCAGCACTTACAAAATCGGTTg                                       <  1:603328/135‑1 (MQ=255)                                                                                             tAAAGTTTACAGTGATATGCTTATTTTTTTATCTTTCGTTTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTTGCACATACTATTCCCTCAGGCGTCAGCACTTACAACATTGGTTGt                                      >  2:408250/1‑135 (MQ=255)                                                                                                 gTTTACAGTGATATGGTTATTTTTTTATCTTACGTTTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTCCAAATTCTGTTGTAAtt                                  <  2:115747/135‑1 (MQ=255)                                                                                                    tACAGTGATATGCTTATTTTTTTTTCTTACGATTTTGTACGTGCATGCTTACCTAGGCGTATGGCTCGAGCAATTAGTATGTCGCACATACTATTCCCTCCTGCGTCAGCACTTAACAAATTAGTTGTAAgtttt                               >  2:408238/1‑134 (MQ=255)                                                                                                        gTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATAGGTTGTAATTTGCAttt                           >  2:559877/1‑135 (MQ=255)                                                                                                           atatGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTCCAAACTCGGTTGTAATTTTCAtttttt                        >  2:121445/1‑134 (MQ=255)                                                                                                           atatGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTta                        >  1:180784/1‑135 (MQ=255)                                                                                                             atGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTtata                      >  2:375092/1‑135 (MQ=255)                                                                                                             atGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTtata                      <  2:540925/135‑1 (MQ=255)                                                                                                              ttcTTATTTTTTTATCTTACGATTTTGTACTTGCATGCTTGCCTAGGGGTATGGCTCGATCCATTAGTCTCTCTCACATACTATTCCCTCAGGCGTCATCACTTACAAAATTTTTTTTAATTTTCATTTTTATAc                     <  1:379824/133‑1 (MQ=255)                                                                                                              tGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATAc                     <  2:679827/135‑1 (MQ=255)                                                                                                              tGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATAc                     <  2:599668/135‑1 (MQ=255)                                                                                                                 ttATTTTTTTATCTTGCGATTTGTTACGTGTATGCTTGCTTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCa                  <  2:44578/135‑1 (MQ=255)                                                                                                                 ttATTTTTTTATCTTACTATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCa                  <  2:44479/135‑1 (MQ=255)                                                                                                                 ttATTTTTTTATCTTACGATTTTGTACGTGTATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCa                  <  2:428410/135‑1 (MQ=255)                                                                                                                 ttATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCa                  <  1:541401/135‑1 (MQ=255)                                                                                                                   aTTTTTTTATCTTACCATTTTGTACATACATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGGTGTAATTTTCATTTTTATACGCAtt                >  1:346869/1‑135 (MQ=255)                                                                                                                    tttttttATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTc               <  2:612093/135‑1 (MQ=255)                                                                                                                    tttttttATCTGTCGTTTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTc               <  2:245555/135‑1 (MQ=255)                                                                                                                     ttttttATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCt              <  1:298785/135‑1 (MQ=255)                                                                                                                     ttttttATCTTACGATTTTGTACGTGCATGCTTACCTAGGGGTATGGCTCGAACCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGAATTCt              >  1:554796/1‑135 (MQ=255)                                                                                                                       ttttATCTTACTATTTTGTACATGCATACTTACCTAGGGATATAGCTCGAGCCCTTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATAGGTTTTAATTTTCATTTTTATACGCATTCTTa            >  1:254238/1‑135 (MQ=255)                                                                                                                        tttATCTTACGATTTTGTACGTGCTTTCTTTCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTAc           <  2:681574/135‑1 (MQ=255)                                                                                                                           aTCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGAATGACTCAAGCCATTAATCTCTCGCACATACTATTCCCTCAGGCGTAAGCACTTACAAAATAGGTTGTCATTTTCCTTTTTATATGAATACTTAcaag        >  1:33411/1‑132 (MQ=255)                                                                                                                             cTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTgaga      <  1:36600/135‑1 (MQ=255)                                                                                                                              tttcGATTTTGTACGTGCATGCTTTCCTAGGGTTATGGCTCTAGCTATTAGTCTTTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAGATCGGTTGTAATTTTAATTTTTATAAGAATTCTTTCTGAGAt     >  1:187428/4‑135 (MQ=255)                                                                                                                              ttccGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGAt     <  2:351497/132‑1 (MQ=255)                                                                                                                              ttACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACATAATTGGTTGTAATTTTTTTTTTTTTACGCATTCTTACTGAGAt     <  1:171182/135‑1 (MQ=255)                                                                                                                              ttACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTTTACGTATTCTTACTGAGAt     <  1:486233/135‑1 (MQ=255)                                                                                                                                aCGATTTTGTACGTGCATGCTTGCCTAGAGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCCTTCTTACTGAGATta   >  1:121648/1‑135 (MQ=255)                                                                                                                                 cGATTTTGTACGGGCATGCTTTCCTAGGGGTATGGCTCGACCCATTAGTCTCTCGCACCGTCTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATtat  <  2:335111/135‑1 (MQ=255)                                                                                                                                 |                                                                                                                                       TAGAGAAATAAACTAGTGGCCGATTGTGCTTGATGAGCTTGGGACATAAATCCTAACTCGAAATAAATAAGCATATCACTAAACTGATTTTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTAT  >  USA300TCH1516_ALE/36966‑37228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.