New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	37094 =	77 (1.350)	4 (0.080)	4/248	5.2	5.3%	intergenic (+118/‑719)	USA300HOU_RS14915/ugpQ_1	hypothetical protein/Glycerophosphodiester phosphodiesterase, cytoplasmic
	?	USA300TCH1516_ALE	37188 =	72 (1.360)					intergenic (+212/‑625)	USA300HOU_RS14915/ugpQ_1	hypothetical protein/Glycerophosphodiester phosphodiesterase, cytoplasmic
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGG  >  USA300TCH1516_ALE/37055‑37320                                                                                                                                      |                                                                                                                                     ttttAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACCATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCATGCGTCAGCACTTACAAAAACGGt                                                                                                                                     <  1:15877/135‑1 (MQ=255)   ttAAAGTTTACATTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCATGCGTCAGCACTTACAAAATCGGTTg                                                                                                                                   <  1:603328/135‑1 (MQ=255)    tAAAGTTTACAGTGATATGCTTATTTTTTTATCTTTCGTTTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTTGCACATACTATTCCCTCAGGCGTCAGCACTTACAACATTGGTTGt                                                                                                                                  >  2:408250/1‑135 (MQ=255)        gTTTACAGTGATATGGTTATTTTTTTATCTTACGTTTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTCCAAATTCTGTTGTAAtt                                                                                                                              <  2:115747/135‑1 (MQ=255)           tACAGTGATATGCTTATTTTTTTTTCTTACGATTTTGTACGTGCATGCTTACCTAGGCGTATGGCTCGAGCAATTAGTATGTCGCACATACTATTCCCTCCTGCGTCAGCACTTAACAAATTAGTTGTAAgtttt                                                                                                                           >  2:408238/1‑134 (MQ=255)               gTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATAGGTTGTAATTTGCAttt                                                                                                                       >  2:559877/1‑135 (MQ=255)                  atatGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTCCAAACTCGGTTGTAATTTTCAtttttt                                                                                                                    >  2:121445/1‑134 (MQ=255)                  atatGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTta                                                                                                                    >  1:180784/1‑135 (MQ=255)                    atGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTtata                                                                                                                  <  2:540925/135‑1 (MQ=255)                    atGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTtata                                                                                                                  >  2:375092/1‑135 (MQ=255)                     ttcTTATTTTTTTATCTTACGATTTTGTACTTGCATGCTTGCCTAGGGGTATGGCTCGATCCATTAGTCTCTCTCACATACTATTCCCTCAGGCGTCATCACTTACAAAATTTTTTTTAATTTTCATTTTTATAc                                                                                                                 <  1:379824/133‑1 (MQ=255)                     tGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATAc                                                                                                                 <  2:599668/135‑1 (MQ=255)                     tGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATAc                                                                                                                 <  2:679827/135‑1 (MQ=255)                        ttATTTTTTTATCTTGCGATTTGTTACGTGTATGCTTGCTTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCa                                                                                                              <  2:44578/135‑1 (MQ=255)                        ttATTTTTTTATCTTACTATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCa                                                                                                              <  2:44479/135‑1 (MQ=255)                        ttATTTTTTTATCTTACGATTTTGTACGTGTATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCa                                                                                                              <  2:428410/135‑1 (MQ=255)                        ttATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCa                                                                                                              <  1:541401/135‑1 (MQ=255)                          aTTTTTTTATCTTACCATTTTGTACATACATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGGTGTAATTTTCATTTTTATACGCAtt                                                                                                            >  1:346869/1‑135 (MQ=255)                           tttttttATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTc                                                                                                           <  2:612093/135‑1 (MQ=255)                           tttttttATCTGTCGTTTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTc                                                                                                           <  2:245555/135‑1 (MQ=255)                            ttttttATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCt                                                                                                          <  1:298785/135‑1 (MQ=255)                            ttttttATCTTACGATTTTGTACGTGCATGCTTACCTAGGGGTATGGCTCGAACCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGAATTCt                                                                                                          >  1:554796/1‑135 (MQ=255)                              ttttATCTTACTATTTTGTACATGCATACTTACCTAGGGATATAGCTCGAGCCCTTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATAGGTTTTAATTTTCATTTTTATACGCATTCTTa                                                                                                        >  1:254238/1‑135 (MQ=255)                               tttATCTTACGATTTTGTACGTGCTTTCTTTCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTAc                                                                                                       <  2:681574/135‑1 (MQ=255)                                  aTCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGAATGACTCAAGCCATTAATCTCTCGCACATACTATTCCCTCAGGCGTAAGCACTTACAAAATAGGTTGTCATTTTCCTTTTTATATGAATACTTAcaag                                                                                                    >  1:33411/1‑132 (MQ=255)                                    cTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTgaga                                                                                                  <  1:36600/135‑1 (MQ=255)                                     tttcGATTTTGTACGTGCATGCTTTCCTAGGGTTATGGCTCTAGCTATTAGTCTTTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAGATCGGTTGTAATTTTAATTTTTATAAGAATTCTTTCTGAGAt                                                                                                 >  1:187428/4‑135 (MQ=255)                                     ttccGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGAt                                                                                                 <  2:351497/132‑1 (MQ=255)                                     ttACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACATAATTGGTTGTAATTTTTTTTTTTTTACGCATTCTTACTGAGAt                                                                                                 <  1:171182/135‑1 (MQ=255)                                     ttACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTTTACGTATTCTTACTGAGAt                                                                                                 <  1:486233/135‑1 (MQ=255)                                       aCGATTTTGTACGTGCATGCTTGCCTAGAGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCCTTCTTACTGAGATta                                                                                               >  1:121648/1‑135 (MQ=255)                                        cGATTTTGTACGGGCATGCTTTCCTAGGGGTATGGCTCGACCCATTAGTCTCTCGCACCGTCTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATtat                                                                                              <  2:335111/135‑1 (MQ=255)                                          aTTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTTAGATTATAc                                                                                            <  2:407406/135‑1 (MQ=255)                                          aTTTTGTACGGGCATGCTTGCCTAGGGGTATGGCTTGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTATCATTTTTATACGCATTCTTACTGAGATTATAc                                                                                            <  1:310829/135‑1 (MQ=255)                                           ttttGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATAAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATtatatt                                                                                           >  2:375879/1‑133 (MQ=255)                                           ttttGTACGTGCATGCTTGCCTAAAGGTATAGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACt                                                                                           >  1:35575/1‑135 (MQ=255)                                             ttGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAAATTATACaaa                                                                                         >  2:170728/1‑135 (MQ=255)                                               gTACGTGCATGCTTGCCTAGGGGTATGGCTCTAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACtaata                                                                                       <  2:425869/135‑1 (MQ=255)                                                  cGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTATTGTGATTGTACTAATAaga                                                                                    <  1:282342/135‑1 (MQ=255)                                                   gTGCATGCTTGCCTAGGGGGATGGCACGAACCATTAGTCTCTCGCACATACTATTCCCTCGGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAagag                                                                                   >  1:133756/1‑135 (MQ=255)                                                    tGCATGCTTGCATAAAGGAATGACACGAGCCATTAATCTCTCGCACATACTATTCCCTCAGGCGTCAACACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAgg                                                                                  >  1:282605/1‑135 (MQ=255)                                                     gCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTCCAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGGGGa                                                                                 >  1:335111/1‑135 (MQ=255)                                                     gCATGCTTGCCTAGGGGTATGGCTCAAAACATTAATCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGa                                                                                 >  1:205827/1‑135 (MQ=255)                                                     gCATGCTTGCCTAGAGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCGTTTTTACGGAGAGTATACTAATAAGAGGa                                                                                 >  1:446713/1‑135 (MQ=255)                                                      cATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATTGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGaa                                                                                <  2:543601/135‑1 (MQ=255)                                                      cATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGaa                                                                                <  1:604040/135‑1 (MQ=255)                                                       aTGCTTGCCTCGGGTTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATTTGCATTCTTACTGAGATTATACTAATAAGAGGAAt                                                                               <  1:51304/135‑1 (MQ=255)                                                           ttGCCTAGGGGTATGGCACGAGCAATTGGTCTCTCGCACATACTATTCCCCCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAataata                                                                           >  2:254219/1‑135 (MQ=255)                                                             gCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTaaa                                                                         >  1:281116/1‑135 (MQ=255)                                                                  ggggTATGGCTCGAGCCATTAGTCTCACGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCaa                                                                    >  1:69593/1‑135 (MQ=255)                                                                        tGGCTCGAGCCATTAGTCTATCACACATACTATACCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTaa                                                              >  1:650510/1‑135 (MQ=255)                                                                            tCGCGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTaa                                                          >  1:514602/1‑135 (MQ=255)                                                                            tCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTACGTaa                                                          >  2:493745/1‑135 (MQ=255)                                                                            tCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTaa                                                          >  2:42352/1‑135 (MQ=255)                                                                            tCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTaa                                                          <  1:394820/135‑1 (MQ=255)                                                                              gAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTATTTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTaaaa                                                        <  1:401880/135‑1 (MQ=255)                                                                                    ttAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTATTAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAg                                                  <  1:217556/135‑1 (MQ=255)                                                                                    ttAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGTAATTCTAAGTAAAAATGCAg                                                  <  1:11024/135‑1 (MQ=255)                                                                                    ttAGTCTCTCGCACATACTATTCCCACAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAg                                                  <  2:631102/135‑1 (MQ=255)                                                                                     tAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGa                                                 <  1:550791/135‑1 (MQ=255)                                                                                        tctctcGCACATACTATTCCCTCAGGCGTCAGCACTTACGAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGTAATTCTAAGTAAAATTGCAGATaa                                              <  1:433589/135‑1 (MQ=255)                                                                                         ctctcGCACATACTGTTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAag                                             >  1:296766/1‑135 (MQ=255)                                                                                                acaTACTATTCCCTCGGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTg                                      <  2:133756/135‑1 (MQ=255)                                                                                                 caTACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGt                                     >  2:254017/1‑135 (MQ=255)                                                                                                 caTACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGt                                     >  2:191837/1‑135 (MQ=255)                                                                                                 caTACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGt                                     >  2:105581/1‑135 (MQ=255)                                                                                                 caTACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTCTGt                                     >  2:338881/1‑135 (MQ=255)                                                                                                  aTACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGtt                                    >  2:152319/1‑135 (MQ=255)                                                                                                   tACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGATTGTTa                                   >  2:477839/1‑135 (MQ=255)                                                                                                             tCAGGCGTCATCACTTCCAACGTCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTtc                         <  2:281116/135‑1 (MQ=255)                                                                                                             tCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAATAGGTTTGTTAAAAGCAGtgc                         <  1:159981/135‑3 (MQ=255)                                                                                                                       gCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAAt               >  2:178357/1‑135 (MQ=255)                                                                                                                        cACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAAtt              <  1:245985/135‑1 (MQ=255)                                                                                                                           ttACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACa           >  2:395264/1‑135 (MQ=255)                                                                                                                                    cGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTTAAATAACAGATAAGAgg  <  1:671089/135‑1 (MQ=255)                                                                                                                                      |                                                                                                                                     TTTTAAAGTTTACAGTGATATGCTTATTTTTTTATCTTACGATTTTGTACGTGCATGCTTGCCTAGGGGTATGGCTCGAGCCATTAGTCTCTCGCACATACTATTCCCTCAGGCGTCAGCACTTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGG  >  USA300TCH1516_ALE/37055‑37320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.