New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 614093124 (2.170)6 (0.110) 3/264 6.0 4.8% coding (2405/2844 nt) sdrC Serine‑aspartate repeat‑containing protein C
?USA300TCH1516_ALE 614118 = 114 (2.020)coding (2430/2844 nt) sdrC Serine‑aspartate repeat‑containing protein C
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 130 total aligned reads displayed.

TTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGC  >  USA300TCH1516_ALE/613959‑614226
                                                                                                                                      |                                                                                                                                        
ttcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAg                                                                                                                                          >  1:663105/1‑135 (MQ=255)
 tcagaCAGCGACTCAGACTCAGACAGCGATTCCGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGt                                                                                                                                         <  2:663599/135‑1 (MQ=255)
 tcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGCTAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGt                                                                                                                                         >  1:369584/1‑135 (MQ=255)
 tcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGCCAgc                                                                                                                                         >  2:631704/1‑134 (MQ=255)
 tcagaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGt                                                                                                                                         >  1:537859/1‑135 (MQ=255)
 taagaCAGCGACTCAGACTCAGACAGCGATTCCGCCTCCAATCGCGGCTCAGACTCAGATAGCGACTCCGAAACCGAGAGCGTCTATGCTGCATATAGCGATTCAGATTCAGATACCGATTCGGACTcagtcagt                                                                                                                                         <  1:457700/133‑1 (MQ=9)
    gaCAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgat                                                                                                                                      >  1:637064/1‑135 (MQ=255)
      cAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattc                                                                                                                                    >  1:599638/1‑135 (MQ=255)
      cAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattc                                                                                                                                    <  2:363883/135‑1 (MQ=255)
      cAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGAGAGCGATTCAGATTCAGATAGCGATACGGAATCAGACAGAgactc                                                                                                                                    >  2:457082/1‑135 (MQ=17)
       caccagtcagactcagacCGCGACTCAGACGCGGATAGCGACTCAGCCTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattca                                                                                                                                   <  2:136366/129‑1 (MQ=14)
           actcaggctcagACCTCGATTCAGACTCGGATACGGTCTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATATCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattcagatt                                                                                                                               <  1:159039/135‑1 (MQ=17)
           actcagactcagACAGCGATTCAGACTCGGATAGCGACTCAGCCTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTgattcagatt                                                                                                                               <  1:320553/135‑1 (MQ=255)
             tcagactcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGAAACCGATTCAGAATCAGATAGCGAATCAGACTCAGACAAAgattcagataaa                                                                                                                             >  2:226254/1‑132 (MQ=14)
              cagactcagacAGCGATTCAGACTCGGAGAGCGACTCAGACTCAGATTGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGattcagattcag                                                                                                                            <  2:213647/135‑1 (MQ=255)
               agactcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGAttcagattcaga                                                                                                                           <  1:590124/135‑1 (MQ=255)
               agactcagacAGCGATCCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGAttcagattcaga                                                                                                                           <  1:511491/135‑1 (MQ=255)
                gactcagacGGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGAc                                                                                                                          <  2:557244/135‑1 (MQ=255)
                gactcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGTCTCAGACAGTGATTCAGATTCAGAc                                                                                                                          <  1:514670/135‑1 (MQ=255)
                gactcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGAc                                                                                                                          <  1:679685/135‑1 (MQ=255)
                gactcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGTGATTCAGATTCAGAc                                                                                                                          >  1:643156/1‑135 (MQ=255)
                 actcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACt                                                                                                                         >  1:249/1‑135 (MQ=255)
                 actcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCGGACTCAGACAGCGAGTCAGATACAGAca                                                                                                                         >  2:437575/1‑134 (MQ=14)
                  ctcagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTc                                                                                                                        >  1:233891/1‑135 (MQ=255)
                    cagacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAg                                                                                                                      <  1:642450/135‑1 (MQ=255)
                     agacAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGa                                                                                                                    >  1:213129/1‑135 (MQ=255)
                       acAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCATATTCAGACTCAGATa                                                                                                                  <  1:349941/135‑1 (MQ=255)
                       acAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATa                                                                                                                  >  1:171991/1‑135 (MQ=255)
                           cGATTCAGACTCGGATAGCGACTCAAACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGa                                                                                                              >  1:77509/1‑135 (MQ=255)
                               tcatgttCGCATTGCGAACCAGACTCAGTGTGAGACGTAGATACGGATAGCGACTTAGACTTAGATACCGATTCAGATTCAGATAGCGACTGGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCa                                                                                                          <  2:275089/129‑1 (MQ=12)
                               tCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACCAAGATAGCGACTCa                                                                                                          >  2:627611/1‑135 (MQ=255)
                                 aGACTCGGATAGCCACTCGGATTCTGATTGCGACTCAGACTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGa                                                                                                       <  2:280320/135‑1 (MQ=18)
                                  gACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGCGCTTCAGATTCAGACTCCGATAGGGACTCAGAt                                                                                                      >  2:135917/1‑135 (MQ=255)
                                     tCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCAGATTCAGACCCCGATAGCGACTCAGAttac                                                                                                   >  2:144980/1‑133 (MQ=255)
                                     tCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGAGATTCGGACTCAGACAGTGATTCAGATTCAGACTCCGGTGCCGACTCAGATTCt                                                                                                  >  2:37612/1‑135 (MQ=18)
                                     gcGGATAACGACGCAGACTCAGATAGCGACTCAGAGTCGGATAGCGACGCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGAATGAGATTca                                                                                                   >  2:31234/2‑134 (MQ=18)
                                        gATAGGGACTCAGACTCAGATAGCGATTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGAc                                                                                               <  1:167161/135‑1 (MQ=255)
                                        gATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGTTAGCTACTCAGATTCAGAc                                                                                               <  1:3262/135‑1 (MQ=255)
                                        gATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATGCTGAc                                                                                               <  1:451300/135‑1 (MQ=255)
                                        gATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGAAAGGGATTCAGATTCCGACGCAGATAGCGACTCAGATGCTGAc                                                                                               >  2:478859/1‑135 (MQ=18)
                                         acggacactcacacgcagATTGCGATTCAGATTCGGATAGCGACTCAGACCCAGATTGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACa                                                                                              <  2:164723/129‑1 (MQ=18)
                                         aTAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACGCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACa                                                                                              <  1:399216/135‑1 (MQ=255)
                                            gCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTAAGATTCAGATAACGAATAGGACTCAGACAGCGATTCAGATTCAGATTCCGACAGCGACTCAGATGCTGatggcg                                                                                           >  2:296074/1‑130 (MQ=17)
                                               atacagactcagaTAGCGACGCAGATTAGGATGGCGACTCAGACGGAGACAGCGAGTCAGATGCAGATGGCGATTCGGACACAGACAGTGATTCAGATTCAGAATCAGATAGCGACTCAGATTCTGACAGCGAtt                                                                                        <  2:242298/132‑1 (MQ=21)
                                               actcagacgcagACAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGAtt                                                                                        <  2:511331/135‑1 (MQ=255)
                                                    ggctcagaTTGCGTCTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATtcagac                                                                                   <  2:294117/133‑1 (MQ=255)
                                                     actcagaTAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACACAGATAGAGACTCAGATGCTGACACAGATtcagaga                                                                                  >  2:62851/1‑133 (MQ=17)
                                                     acccagaTATCGACTCAGATTCGGATAGCGACTAAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATtcagact                                                                                  <  2:259143/132‑1 (MQ=255)
                                                       gcagaTAGCGACTCAGATTCGGATCGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATtcagactca                                                                                <  2:540144/134‑1 (MQ=255)
                                                          gaTAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATCGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCGGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATtcagactcagac                                                                             <  2:225820/135‑1 (MQ=255)
                                                          gaTAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATtcagactcagac                                                                             <  2:507710/135‑1 (MQ=255)
                                                          gaTAGCGACTCAGATTCGGATAGCGACTCAGACTCACACAGCAATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATtcagactcagac                                                                             <  1:405125/135‑1 (MQ=255)
                                                            tAGAGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCATATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAg                                                                           <  1:568339/135‑1 (MQ=255)
                                                             accGACTCTGGTCCGGATTGCGACTCAGACTCCGATTGCTATTCAGACACAGATACCTACTCGGACCCCAACACTGAGTCTGTTTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGc                                                                          <  2:614/133‑1 (MQ=12)
                                                                gACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGAGTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGACTCAGACTCAGACAGCgac                                                                       >  2:316423/1‑135 (MQ=255)
                                                                     aGATTCGGATAGCGACTCAGACTCAGATAGCGAGTCAGATTCAGATTGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCgactcaga                                                                  <  2:458549/135‑1 (MQ=255)
                                                                      gATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCTACTCAGATTCTGACAGCGATTCAGACTCAGACAGCgactcagac                                                                 <  1:130277/135‑1 (MQ=255)
                                                                         tCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCgactcagactca                                                              <  1:73208/135‑1 (MQ=255)
                                                                           ggATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGActcagactcaga                                                            <  1:356062/135‑1 (MQ=255)
                                                                             aTAGCGACTCAGACTCAGATAACGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACa                                                          >  1:47338/1‑135 (MQ=255)
                                                                                gCGACACCGACTCAGATAGCGATTCACATTCAGATAGCGACTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTg                                                       <  2:165695/135‑1 (MQ=255)
                                                                                 cGACTCAGACTCAGATAACGAATCAAATTCAGATAGCGATGAAAACACATACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTga                                                      >  1:488969/1‑135 (MQ=21)
                                                                                      cagactcagaTAGCGGTTCAGATTCAGATAGCGATTCGGACTCAGACAGAGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGAAANCGANTNAGACTCAGACAGTgattcag                                                 >  1:377918/1‑135 (MQ=255)
                                                                                      cagactcagaTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgattcag                                                 >  1:343946/1‑135 (MQ=255)
                                                                                      cagactcagaTAGCGATTCAGATTCAGATAGCGATTCGGACACAAACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgattcag                                                 >  1:575249/1‑135 (MQ=255)
                                                                                      cagactcagaTAGCGATTCAGATTCAGATAGCGAATCGGACTCAGACAGTAATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTgattcag                                                 >  1:156289/1‑135 (MQ=255)
                                                                                        gactcagaTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGAGAGTGAGTGGTCATGAACCGTCCAGACGCAGACAGCGACTCAGACACAGCCAGTgattaagat                                               >  2:429350/1‑135 (MQ=12)
                                                                                             agctAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGTCTTAGACTCAGACAGTGAttcagattcaga                                          <  1:4456/132‑1 (MQ=255)
                                                                                               aTAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACa                                        >  2:676452/1‑135 (MQ=255)
                                                                                                 cgtgagtcagattctgatAGCGATTCTGACTCAGACAGTGACTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGc                                      <  2:206216/129‑1 (MQ=18)
                                                                                                 aGCGATTCAGCTTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGc                                      <  1:60264/135‑1 (MQ=255)
                                                                                                 aGCGATTCAGATTCAGATAGCGATTCGGAATCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGTCTCAGACTCAGACAGTGATTCAGATTCAGACAGc                                      <  1:31234/135‑1 (MQ=255)
                                                                                                  tcGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCg                                     <  1:491345/134‑1 (MQ=255)
                                                                                                  gCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTAAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCg                                     <  1:413899/135‑1 (MQ=255)
                                                                                                    gattcagattcaGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGAc                                   <  1:26867/135‑1 (MQ=255)
                                                                                                    gattcagattcaGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGACAGCGACTCAAACTCAGACAGAGAAGCCGAATCAGACAGCGAc                                   >  1:262518/1‑135 (MQ=21)
                                                                                                       tcagattcagatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGGTTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGACTCAGATTCAGACAGCGACtca                                >  2:543453/1‑135 (MQ=255)
                                                                                                       tcagattcagatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACgca                                >  1:454451/1‑135 (MQ=255)
                                                                                                             tcagatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATACCGACCCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattca                          <  2:171991/135‑1 (MQ=255)
                                                                                                              cagcgtgCGACTCGGTTTCAGACACTGATTCCGATCCAGCCTCCGTCAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcag                         <  2:523550/129‑1 (MQ=17)
                                                                                                                gatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcagat                       >  1:503502/1‑135 (MQ=255)
                                                                                                                gatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACtcagattcagat                       >  2:143827/1‑135 (MQ=255)
                                                                                                                gatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACGCAGACAGTGAGTCAGATTCAGACAGCGAGtcagattcagat                       >  2:269959/1‑135 (MQ=255)
                                                                                                                gatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATGCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGAGTCAGATTCAGACAGCGACtcagattcagat                       >  2:338526/1‑135 (MQ=255)
                                                                                                                gatAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAACGACTCAGATTCTGACGGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCCGATTCAGACAGCGACtcagattcagat                       >  2:291645/1‑135 (MQ=255)
                                                                                                                gatAGCGATTCGGACTCAGACAGTGAATCATAGGCAGACTCAGCATGGCGCGCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACtcagattcagat                       <  1:655492/135‑1 (MQ=18)
                                                                                                                 atAGCGATTCGGACTCAGACAGTGATTCAGATTCATACTCAGATAGAGACTCAGATACTGGCAGCTATTCAGACCCGAAAAGCGACTCATGCTAAGACAGTGATTCAGATACAAACAGCGACTCAGCTtcagtta                      >  2:208859/1‑135 (MQ=21)
                                                                                                                      gATTCGGACTCAGACAGTGACTGAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgac                 <  1:517472/135‑1 (MQ=255)
                                                                                                                            gACTCAGACAGGGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagac           <  1:613230/135‑1 (MQ=255)
                                                                                                                            gACTAAGACACTGATTCAGATTGCGACTCAGATAGCGACTCCGATTCTCACAGCGATTCACACTCAGACAGAGACGCAGACTCAGACAGTGATTCAGATTCAGACAGTGACTCTGATttagatagcgactcagac           <  1:165076/135‑1 (MQ=17)
                                                                                                                             aCTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagact          <  1:6618/135‑1 (MQ=255)
                                                                                                                               tCAGACAGTGATTCAGATTCAGACTCAGATAACGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactca        >  1:216197/1‑135 (MQ=255)
                                                                                                                               tCAGACAGTGAGTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactca        >  1:338166/1‑135 (MQ=255)
                                                                                                                                 aGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGGGACTCAGATtcagatagcgactcagactcaga      <  1:219048/135‑1 (MQ=255)
                                                                                                                                 aGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcaga      <  1:135802/135‑1 (MQ=255)
                                                                                                                                  gACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcggat     >  2:511516/1‑135 (MQ=255)
                                                                                                                                   aCAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagataacgactcagactcagata    >  1:223002/1‑135 (MQ=255)
                                                                                                                                   aCAGTGATTCAGATTCAGACTCAGATAGCGAATCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtaagatagcgactcagactcagata    >  1:252857/1‑135 (MQ=255)
                                                                                                                                     aGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCGGACAGCGACTCAGATtcagatagcgactcagactcagatagc  >  1:264300/1‑135 (MQ=255)
                                                                                                                                     aGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATtcagatagcgactcagactcagatagc  >  1:85277/1‑135 (MQ=255)
                                                                                                                                      |                                                                                                                                        
TTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGC  >  USA300TCH1516_ALE/613959‑614226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.