BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 800928	158 (1.210)	5 (0.040)	4/280	9.3	3.4%	intergenic (+62/‑289)	hisC_1/USA300HOU_RS03915	Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase
*	?	USA300TCH1516_ALE	801948 =	134 (1.080)	5 (0.040)	4/280	9.3	3.4%	intergenic (+189/+435)	USA300HOU_RS03915/USA300HOU_RS03920	Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 159 total aligned reads displayed.

CAACTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTG  >  USA300TCH1516_ALE/800784‑801075

cAACTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTg                                                                                                                                                  <  2:541924/148‑1 (MQ=255)

 aaCTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGc                                                                                                                                                 >  2:1301657/1‑148 (MQ=255)

  aCTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAAcataaa                                                                                                                                                <  1:160891/148‑6 (MQ=255)

      gtgtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGt                                                                                                                                            <  1:953551/148‑1 (MQ=255)

       tgtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGCGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTc                                                                                                                                           <  2:507350/148‑1 (MQ=255)

       tgtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTc                                                                                                                                           <  1:447639/148‑1 (MQ=255)

       tgtTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTc                                                                                                                                           <  1:806133/148‑1 (MQ=255)

       tgtTAGAATTACAATTGGTTTTAAAGAACAAAATAATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGCGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTc                                                                                                                                           <  1:935734/148‑1 (MQ=255)

         ttAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTg                                                                                                                                         >  2:1109336/1‑148 (MQ=255)

              aTTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGaa                                                                                                                                    >  1:1090866/1‑148 (MQ=255)

               ttACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGaaa                                                                                                                                   >  1:205164/1‑148 (MQ=255)

                  cAATTGGTTTTAAAGTACAAAATCATAAACTGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGGCCCACCCCAACTTGCATTGTCTGTAGAAATTg                                                                                                                                <  2:329480/148‑1 (MQ=255)

                  cAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAATGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTTGTCGTCCCACCCCAACTTGCATTGTCTGTATAAATTg                                                                                                                                >  2:606649/1‑148 (MQ=255)

                     ttGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTCGAACTTGGGa                                                                                                                             >  1:141286/1‑148 (MQ=255)

                      tGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTGTAAATTGGGaa                                                                                                                            >  1:878554/1‑148 (MQ=255)

                      tGGTTTTAAAGAACAAAATGATAAAATACTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCATCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGaa                                                                                                                            >  1:915622/1‑148 (MQ=255)

                        gTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCACCATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTCGAAATTGGGAATc                                                                                                                          >  1:1344382/1‑148 (MQ=255)

                        gTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATc                                                                                                                          >  2:110302/1‑148 (MQ=255)

                        gTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATAAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATGGTCTGTAGAAATTGGGAATc                                                                                                                          >  2:1308182/1‑148 (MQ=255)

                           ttAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCaa                                                                                                                       <  1:1359605/148‑1 (MQ=255)

                           ttAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCaa                                                                                                                       <  1:1046443/148‑1 (MQ=255)

                              aaGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGGATCCAAttt                                                                                                                    >  1:725172/1‑148 (MQ=255)

                               aGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGACATGATACTTTCGCAAAATTTATTTCGTCGTCCCCCCCCAACTTGCATTGTCTGTAGCACTTGGGAATCGAAttta                                                                                                                   >  1:985130/1‑147 (MQ=25)

                               aGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAACAGTAAGTGGGGACTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCCTTGTCTGTAGAAATTGGGAATCCAATTtc                                                                                                                   <  2:965289/148‑1 (MQ=255)

                                 aaCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCTCCCCAAATTGCATTGTCTGTAGAAATTGGGAATCCAATTtctc                                                                                                                 >  2:723529/1‑148 (MQ=255)

                                 aaCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtctc                                                                                                                 >  1:1237851/1‑148 (MQ=255)

                                 aaCAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtctc                                                                                                                 <  1:1301657/148‑1 (MQ=255)

                                   cAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCtt                                                                                                               <  1:450829/148‑1 (MQ=255)

                                    aaatTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTtctacag                                                                                                              <  2:885513/148‑5 (MQ=255)

                                     aaaTGATAACATGTTAGAAGGTTTATCAAACTCTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttg                                                                                                             <  2:960971/148‑1 (MQ=255)

                                     aaaTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttg                                                                                                             <  1:438821/148‑1 (MQ=255)

                                     aaaTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttg                                                                                                             <  1:542404/148‑1 (MQ=255)

                                     aaaTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAAGAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttg                                                                                                             <  1:461466/148‑1 (MQ=255)

                                       aTGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTttgtt                                                                                                           >  1:370145/1‑148 (MQ=255)

                                          aTAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTggg                                                                                                        <  2:1175974/148‑1 (MQ=255)

                                          aTAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTggg                                                                                                        >  1:781148/1‑148 (MQ=255)

                                          aTAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTggg                                                                                                        >  2:214351/1‑148 (MQ=255)

                                              aaTGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGccc                                                                                                    <  1:479921/148‑1 (MQ=255)

                                                   tAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCccgccg                                                                                               >  1:231609/1‑148 (MQ=255)

                                                   tAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGGGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCCATTTCCCTTCGTTTGGGCCccgccg                                                                                               >  1:724098/1‑148 (MQ=18)

                                                   tAGAAGTTTGATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTGCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCCCTTTGTTGCGcccccccca                                                                                               <  2:277228/148‑2 (MQ=18)

                                                    aGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGTGCCCCGCCgg                                                                                              >  1:463886/1‑148 (MQ=255)

                                                    aGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATAATTTCGAAAAATTTATTTCGTCGTCCCACCCCCACTTCCTCTTTCTTTCTAAATTGGGAATCCGATTTCTCGTTGTTCGTGACCCGCCgg                                                                                              >  1:39934/1‑148 (MQ=18)

                                                     gAAGTTTTATCAAACTTTAAATATGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGc                                                                                             >  1:706750/1‑148 (MQ=255)

                                                     gAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGGAAGACATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCCCTTTGTTGGGGCCCCGCCGGc                                                                                             >  2:925520/1‑148 (MQ=255)

                                                     gAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGc                                                                                             >  2:1256137/1‑148 (MQ=255)

                                                     gAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGc                                                                                             >  2:1342363/1‑148 (MQ=255)

                                                     gAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATACAATTTCTCTTTGTTGGGGCCCCGCCGGc                                                                                             >  2:1034906/1‑148 (MQ=255)

                                                             aTCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGa                                                                                     <  1:1216862/148‑1 (MQ=255)

                                                                aaaCTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTa                                                                                  <  1:763316/148‑1 (MQ=255)

                                                                aaaCTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTa                                                                                  <  1:901733/148‑1 (MQ=255)

                                                                    tgtAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAAt                                                                              <  1:401735/146‑1 (MQ=255)

                                                                     ttAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGGAtt                                                                             <  2:1362598/148‑1 (MQ=255)

                                                                         aTACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaa                                                                         >  1:786944/1‑148 (MQ=255)

                                                                         aTACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaa                                                                         >  1:356950/1‑148 (MQ=255)

                                                                           aCGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGaaaaa                                                                       >  2:753823/1‑148 (MQ=255)

                                                                             gAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAg                                                                     <  1:110302/148‑1 (MQ=255)

                                                                             gAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAg                                                                     >  2:544505/1‑148 (MQ=255)

                                                                              aaTAGTAAGTGGGGAGTGGGACAGAAATGATAGTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGc                                                                    >  1:1028895/1‑148 (MQ=255)

                                                                              aaTAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGc                                                                    >  2:848337/1‑148 (MQ=255)

                                                                                   tAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGGTGACTAGAATTGAAAAAAGCTTGtt                                                               >  2:447199/1‑148 (MQ=255)

                                                                                   tAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATAGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCTGCCGCCAAGGCTGACTAGAATTGAAAAAAGCTTGtt                                                               >  2:64480/1‑148 (MQ=255)

                                                                                   tAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTAATGGATGCGGGCCAGCGCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAGAGCTTGtt                                                               >  2:926899/1‑148 (MQ=14)

                                                                                    gggTGGGGGGTGGGTCAGAATTGTTACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTa                                                              <  2:85445/146‑1 (MQ=255)

                                                                                      gTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGAGTGTTACa                                                            >  2:1272097/1‑148 (MQ=255)

                                                                                       tGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTGGTGCCACCCCAAATGCGATTGTCTGTAGAAATTGGGAATCCAATTTCACTTTGTTGGGGACCCGCCGGCAAGGTTGACAAGAATAGAAAAAAGCGTGTTActa                                                           >  1:198011/1‑146 (MQ=14)

                                                                                       tGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGGAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCCGCCGGCGAGGTTGACTAGAATTGAAGAAAGCTTGTTACaa                                                           >  2:1268882/1‑148 (MQ=255)

                                                                                       tGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACaa                                                           >  2:1193028/1‑148 (MQ=40)

                                                                                        ggggAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGCCTAGAATTGAAAAAAGCTTGTTACagg                                                          >  2:328406/1‑146 (MQ=255)

                                                                                        ggggAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAg                                                          <  1:268776/148‑1 (MQ=39)

                                                                                        ggggAGTGGGACAGAAATGATACTTTCGCAAAATCTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAg                                                          >  2:283360/1‑148 (MQ=255)

                                                                                          ggAGTGGGACAGAATTGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcg                                                        <  1:309958/148‑1 (MQ=37)

                                                                                          ggAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcg                                                        <  1:1064504/148‑1 (MQ=38)

                                                                                            aGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTTTGGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGTAAAAAGCTTGTTACaatggca                                                      >  1:332106/1‑143 (MQ=255)

                                                                                             gTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCTCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTTACAAAAATTGAAAAAAGCTTGTTACAAGCGCAt                                                     <  2:34944/148‑1 (MQ=255)

                                                                                              taggACAGAAAGGATACTTTCGCAACATTTATTTCGTCGTCCCACCCCAAGTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                                    <  2:732832/146‑1 (MQ=255)

                                                                                              ggggACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtt                                                    <  1:1372213/147‑1 (MQ=255)

                                                                                               gggACAGAAATGATACTTGCGAAAAATTTTTTTCGTCGTCCCACCCCAACTTGGATTGTCTGTAGAAATTGGGAATCCAATTGCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACAAAAAATAAAAAAAGCTTGTTACAAGCGCAttt                                                   <  2:1238049/148‑1 (MQ=11)

                                                                                                 gACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTc                                                 <  1:537725/148‑1 (MQ=40)

                                                                                                  aCAGAAATGATACTTGCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTAGTTGTGGCCCCGCCGCCAAGGTTGACTAGAATTGAAAAAAGCGTGCTACAAGCGCGTTTTCg                                                >  2:699246/1‑148 (MQ=14)

                                                                                                  aCAGAAATGATAATTTCGCAAAATTTATTTTGTCGTCCCTCCGCAACTTGCATTGTCGCAAGAAATTGGGAATCCAATATCGCTTTGTTGGGGCCCCGCCGTCAAGGTTAAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCg                                                <  2:758840/148‑1 (MQ=11)

                                                                                                       aaTGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                           <  2:1313385/148‑1 (MQ=40)

                                                                                                        aTGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCCGt                                          >  2:521844/1‑148 (MQ=255)

                                                                                                              cTTTCGGAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta                                    <  2:1048707/148‑1 (MQ=25)

                                                                                                                ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGAAGTAATAGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact                                  >  1:1024489/1‑148 (MQ=11)

                                                                                                                 tCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                 <  2:973149/148‑1 (MQ=35)

                                                                                                                  cGCAAATCTTATTTCGTCGTCCCTCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACCAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGc                                <  2:1061699/148‑1 (MQ=255)

                                                                                                                   gCAAATGTTTTTTCGTCGTCCCATCCCAACGTGCATTGTTTGTAGAAATTGGGAATCCAATTTCGCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGcc                               <  1:227462/148‑1 (MQ=11)

                                                                                                                    cAAAATTTATTTCGTCGTCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGACAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCa                              >  2:448833/1‑148 (MQ=17)

                                                                                                                     aaaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCGACTACTGCCaa                             >  2:1224389/1‑148 (MQ=18)

                                                                                                                              ttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACttt                    <  2:627440/148‑1 (MQ=35)

                                                                                                                              ttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACttt                    >  2:1016027/1‑148 (MQ=34)

                                                                                                                              ttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACttt                    >  2:123102/1‑148 (MQ=34)

                                                                                                                               tcgtcgTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTg                   <  1:1122573/148‑1 (MQ=35)

                                                                                                                                cgtcgtCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGt                  >  1:1324096/1‑148 (MQ=35)

                                                                                                                                 gtcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGtg                 >  1:583019/1‑147 (MQ=25)

                                                                                                                                 gtcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTa                 >  1:1264028/1‑148 (MQ=35)

                                                                                                                                  tcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTag                >  2:1025336/1‑148 (MQ=35)

                                                                                                                                   cgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTaga               >  1:575692/1‑148 (MQ=35)

                                                                                                                                      cccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCACCTACTGCCAATATAACTTTGTAGAGCa            <  2:1214572/148‑1 (MQ=25)

CAACTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAACTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTG  >  USA300TCH1516_ALE/800784‑801075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.