| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 800928 | 158 (1.210) | 5 (0.040) | 4/280 | 9.3 | 3.4% | intergenic (+62/‑289) | hisC_1/USA300HOU_RS03915 | Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase |
| ? | USA300TCH1516_ALE | 801948 = | 134 (1.080) | intergenic (+189/+435) | USA300HOU_RS03915/USA300HOU_RS03920 | Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 139 total aligned reads displayed.
TAGGCTATAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTT > USA300TCH1516_ALE/801801‑802089 | tAGGCTATAAAGTAATTGTGACTGAGATGACCTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACa < 2:606373/148‑1 (MQ=255) ggCTATAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATa > 1:756500/1‑148 (MQ=255) aaggTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGTCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGaaa > 1:755298/4‑148 (MQ=255) aaGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAAt > 1:1200245/1‑148 (MQ=255) aaGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATACTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAAt > 1:797620/1‑148 (MQ=255) aGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGATGGGCCCCAACATAAAGAAATa > 1:801045/1‑148 (MQ=255) aGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGCTGGGGTGGGCCCCAACATAAAGAAATa > 1:543688/1‑148 (MQ=255) aGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGACCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAGGTTGGGGTGGGCCCCAACATAAAGAAATa > 1:900955/1‑148 (MQ=255) gTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATAc > 1:844357/1‑148 (MQ=255) tAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACt > 1:1258307/1‑148 (MQ=255) tAATTGTGACTGAGATGAACTTTTATGTCATAGACACTACAACACTATATTAGCAGTAGTTGACGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACt < 2:885071/148‑1 (MQ=255) aTTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACttt < 1:119306/148‑1 (MQ=255) tgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCt > 1:1312655/1‑148 (MQ=255) tgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCt > 1:1341524/1‑148 (MQ=255) tgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCt > 1:810724/1‑148 (MQ=255) tgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCt < 2:340256/148‑1 (MQ=255) gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCtt > 1:247529/1‑148 (MQ=255) gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCtt > 1:740399/1‑148 (MQ=255) gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCtt > 1:460312/1‑148 (MQ=255) gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGCTGGGGTGGGCCCCAACATAAAGAAATACtttctgtt > 2:137189/1‑143 (MQ=255) tGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAg > 2:1071971/1‑148 (MQ=255) tGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAg > 2:161204/1‑148 (MQ=255) gagaTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGGAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGa > 1:1246543/1‑148 (MQ=255) agaTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACAGAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCGACATAAAGAAATACTTTTTCTTTAGaa < 1:842219/148‑1 (MQ=255) ttttATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAt > 1:1178367/1‑148 (MQ=255) ttATGTTTTACAGCCTACAACACTATATTGGCAGTAGTTGACTTCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAttt < 2:752605/148‑1 (MQ=18) ttATGTCTTAGCCACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAttt < 1:592537/148‑1 (MQ=255) ttATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAttt < 1:736022/148‑1 (MQ=255) ttATGTCTTAGAAACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGTCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAttt < 2:142176/148‑1 (MQ=255) gtATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACTCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTAttt < 1:834260/147‑1 (MQ=255) gTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAAGTAGTATTTCTTa > 2:1301668/1‑148 (MQ=255) cTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATg > 1:375210/1‑148 (MQ=255) cTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTAGCGCTTTGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATg > 1:1383945/1‑148 (MQ=21) cTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGACAATTTCTACAGACAATGCAAGTTGGGGGGGGCCCCAACATAAAGAAATACTTATTCTTTAGAAATAGGTATTTCTTATg > 1:901429/1‑148 (MQ=21) ttcgatacTACAACAATATAGTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGc < 1:659088/142‑1 (MQ=255) cTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg > 1:956431/1‑148 (MQ=255) cTACAACACTATATTGGCAGGAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg < 2:459476/148‑1 (MQ=255) cTACAACACTATATTGGCAAGAGGTTACCGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg < 1:599112/148‑1 (MQ=17) caacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTa‑a < 2:956431/148‑1 (MQ=255) aatacTATATTGGCAGCAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑Ac < 2:943748/145‑1 (MQ=255) acacTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGGATTTCTTATGCATGAGTGTA‑ACt > 1:1001099/1‑148 (MQ=255) tatggtcAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACATACCATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGT‑TACACTCATGCa < 2:763973/142‑1 (MQ=17) tatTGGCAGTAGTTGACTGCGGGGCCCCAACAGAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGT‑TACACTCATGCa < 2:454499/148‑1 (MQ=255) atTGGAAGTAGGTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCAt < 1:946451/148‑1 (MQ=255) tgggCAGTAGTTGACTGCGTGGCCCCAACATAGAGAAATTTGCACCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCACAACATAAAGAAATACTTTTTCTTTACAAATTAGTATTTCTTATGCCTGAGTGTA‑ACTCATGCAtt < 2:514656/146‑1 (MQ=18) tGGGAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTc < 2:1218878/148‑1 (MQ=255) agtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCatat < 1:123907/148‑1 (MQ=255) agtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCatat < 1:967627/148‑1 (MQ=255) tagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATAttt < 2:981871/148‑1 (MQ=255) gtTGACTGCGGGGCCCCAACATAGAGAGTTTGGAACCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATAttttt < 2:1209950/148‑1 (MQ=255) gtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATAttttt < 2:1115178/148‑1 (MQ=255) gtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTATGCATTATTAGTGTA‑ACTCATGCATTCATAttttt < 2:302320/148‑1 (MQ=17) cTGCGGGGCTCCAACATAGAGAAATTGGAACGCCAATTTCTAAAGACAATTCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTa < 2:74503/148‑1 (MQ=255) cTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTa < 2:1198217/148‑1 (MQ=255) ggCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACAtt < 1:315924/148‑1 (MQ=255) ccAAAATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCt < 2:169409/148‑1 (MQ=255) acAACATATATAAATTGGACCGCCAATTTCTACAGACAATGCCAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTCCTTTAGAAATTAGTATTTCCTATGCATGAGCGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCt < 2:1085765/147‑1 (MQ=18) cAACATAGATAAATGTGAACGCCAATTTCTACAGATAATGCAAGTTGGGGGGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTACTTATGCATGAGTGTA‑ACTCTTTCACTCATATCTTTAAGTACACATTAGCtg < 2:270506/148‑1 (MQ=17) cAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCtg < 2:1391843/148‑1 (MQ=255) aCATAGAGCAGTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACAGAAAGAAATACTTTGTCTTTAGAAATTATTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCtgtg < 1:642257/148‑1 (MQ=18) aCATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCtgtg < 1:1269025/148‑1 (MQ=255) aCATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCtgtg < 2:810724/148‑1 (MQ=255) cATAGAGAAAGTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGa < 1:1334222/148‑1 (MQ=255) agagAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTa < 2:460312/148‑1 (MQ=255) gagaAATTGGAACGCCAATTTCTACAGCCAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTaa > 1:773116/1‑148 (MQ=255) agaAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTAATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAAt > 1:1084983/1‑148 (MQ=255) aaaTTGGAACGCCAATTTCTACAGACGATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATTCTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGa < 2:1282989/148‑1 (MQ=255) gAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTTACTAATGATAAAGa > 2:338538/1‑148 (MQ=255) aaCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGCTAAAGaa > 1:464615/1‑148 (MQ=255) gCCAATTTCTAAAGACGATGCAAGTTGGGGTGAGCCCCAACATAAAGAAATAGTGTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCg < 2:773116/148‑1 (MQ=21) ccAATTTTTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGc < 2:339645/148‑1 (MQ=255) ccAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGc < 2:1178367/148‑1 (MQ=255) aaTTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTa < 2:740399/148‑1 (MQ=255) aaTTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTa < 2:247529/148‑1 (MQ=255) aTTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTAc < 2:215418/148‑1 (MQ=255) tttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACa < 2:1341524/148‑1 (MQ=255) tttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACa < 2:1312655/148‑1 (MQ=255) cTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaa < 2:852730/148‑1 (MQ=255) tACAGACAATTCGTGGTGGGTTGGGTCCCCACATAACGAAATACTTTTTGTTTAGAAATTAGTATTTCTTATGCATGAGTCTA‑ACTCCTGCATTCATATTTTTCAGTATACATTGGCTGTGACGAAGGATATATAATCGCCGCATaat < 2:216799/148‑1 (MQ=12) cAAGTTGGGGTTGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGt < 2:1399718/148‑1 (MQ=255) cAAGTTGGGGTGGGCCCCAACATAAAGACATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACATATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGt < 2:915569/148‑1 (MQ=255) cAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGGATCGCAACATAATAAATCATTAGt > 1:229688/1‑148 (MQ=255) cAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGt > 2:983415/1‑148 (MQ=255) gTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGt < 2:706853/148‑1 (MQ=255) tGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTc > 1:661650/1‑148 (MQ=255) gggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCtt < 1:102748/148‑1 (MQ=255) gggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCtt < 1:415547/148‑1 (MQ=255) gggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCtt > 1:569485/1‑148 (MQ=255) gggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCtt < 1:583224/148‑1 (MQ=255) ggTGGGCCCCAACATAAAGAACTACTTTTTCTTTAGCAATTAGTATTTCTTCTGCATGAGTGTA‑ACCCATGCATTCATCTTTTTCAGTACACCTTAGCCGTGACTGCTCATACAGAATCGCTACATAACCCATCCTTAGTCGTTCttt > 2:390848/1‑148 (MQ=21) ggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCttt > 2:1017680/1‑148 (MQ=255) gcccaccccAACATAAAGAAATACTTTTTCTTCAGAAATTAGTATTTCTTATGCATGAGTGTA‑AATCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTa > 1:1029219/6‑148 (MQ=255) gggCCCCAACATAAAGAAATACTTTTTTTTTTTTTTTTTGCATTTTTTATGCATAAGTGTA‑ACTCAGGTACTGCTATTTTTATATACACATTAGCTGTGACTAATGATACATAATCTCTACACAAACAATCTTTTGTACTTCTTtctc > 2:403925/1‑148 (MQ=9) gggCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATc > 2:1214506/1‑148 (MQ=255) gggCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATc > 1:1216497/1‑148 (MQ=255) gggCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATc > 2:538991/1‑148 (MQ=255) gagCCCCAACATAAAGAAATACTTTTTCTTTAGTAATTAGGATATCTTATGAATGAGGGTA‑ACTTATTCATTTATATTTTTAAGTACACATTAGCGGTGACTAATTATTAAGAATCGCTACATAATCAATCATTAGTCGTTTGTTAta > 2:507011/3‑147 (MQ=18) cctaaCATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCGTTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCAttt < 2:1049278/145‑1 (MQ=255) cccAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCAttt < 2:801045/148‑1 (MQ=255) accAACAGTAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAGTCGCTACATAATCAATCATTAGTCGTTCTTTATCAttt < 2:900955/147‑1 (MQ=255) | TAGGCTATAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTT > USA300TCH1516_ALE/801801‑802089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |