New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1205323	102 (0.780)	25 (0.260) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	8/218	6.1	24.9%	intergenic (‑204/‑365)	USA300HOU_RS15290/lspA	hypothetical protein/Lipoprotein signal peptidase
	?	USA300TCH1516_ALE	= 1443739	NA (NA)					intergenic (‑312/+41)	USA300TCH1516_01342/brnQ_3	hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein
Rejected: Coverage evenness skew score above cutoff.

TGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGAATACGCTC  >  USA300TCH1516_ALE/1443617‑1443886                                                                                                                           |                                                                                                                                                    ggCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAGATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATCTATGTCCCAACct                                                                                                                            <  1:111696/147‑1 (MQ=17)    cAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCtt                                                                                                                         <  2:260537/148‑1 (MQ=35)     agactaaGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCttt                                                                                                                        <  2:558438/143‑1 (MQ=25)     aGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCttt                                                                                                                        <  2:1121090/148‑1 (MQ=35)     aGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCttt                                                                                                                        <  2:1326692/148‑1 (MQ=35)      gTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGGATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCtttt                                                                                                                       >  2:924723/1‑148 (MQ=21)        cGAAGACCGAGGCTGAGACGGCACCCGAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTtat                                                                                                                     <  1:378625/148‑1 (MQ=25)          aatacagAGGCTGAAACGGCACCCTACGAAAGAGAAGCCATTCAATACGAAATATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATGTATGTCCCAACCTCTTTTatat                                                                                                                   <  1:254185/142‑1 (MQ=11)             aCCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtattat                                                                                                                >  1:1364725/1‑148 (MQ=37)                gAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCg                                                                                                             <  1:43366/148‑1 (MQ=40)                gAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCg                                                                                                             <  2:600510/148‑1 (MQ=40)                     tGAGACCGCACGCTAGGGAAGCGAAGCAATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTAtt                                                                                                        <  1:275674/148‑1 (MQ=255)                     ggggaCGGCACCCGAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTAtt                                                                                                        <  2:936951/145‑1 (MQ=255)                       gtaCGGCACCCTAGGAAAGCGAAGTCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTcc                                                                                                      <  1:655992/146‑1 (MQ=255)                       agaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTcc                                                                                                      >  2:208444/1‑148 (MQ=255)                           ggCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGtt                                                                                                  <  2:1405253/148‑1 (MQ=255)                            gCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTg                                                                                                 >  1:508664/1‑148 (MQ=255)                               cccTCGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGata                                                                                              <  1:52089/148‑1 (MQ=255)                                 cTAGGAAAGGGTAGCCATTCTATACGATGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCTAACCTCTTTTATATTATTCGTTATTCCTGTTGATAtt                                                                                            <  2:791210/148‑1 (MQ=17)                                 cTAGGAAAGGCAAGCCATTCAATACGAAGTATTGTATAAATATAGTACAGCAGGAAGATATTTGCTAATTTAAATTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAtt                                                                                            <  2:748195/148‑1 (MQ=17)                                 cTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAtt                                                                                            <  2:111112/148‑1 (MQ=255)                                 cTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAtt                                                                                            <  2:1116094/148‑1 (MQ=255)                                 cTAGAAAATCGAAGCCATTCAATACGAAGTATTGTATCAATAGAGAACAGCAGTATGTTCTTGTCTAATTCAAAATTATCTGACTGCTGTTTTCTTTTGTATTTATCTCGCAATCCCTTTTATTTCATTCTTTATTCCTGTTGATAtt                                                                                            <  2:408568/148‑1 (MQ=9)                                  tAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCGCTAATATATTTTCTAATTGGAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAttt                                                                                           >  1:1100203/1‑148 (MQ=255)                                    ggAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTaa                                                                                         <  2:1163941/148‑1 (MQ=255)                                    ggAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTaa                                                                                         >  1:997842/1‑148 (MQ=255)                                    ggAAAGCGAAGCCATTCAATACGAAGTAATGTATAAATAGAGAACAGCAGTAAGATATTTTCGAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTaa                                                                                         >  1:913590/1‑148 (MQ=255)                                     gAAAGGGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTCATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAAt                                                                                        <  1:1101525/148‑1 (MQ=255)                                                cATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTAATGCTGTTTTTTTTGGGCTTTATGTCCCAACCTCTTTTATATTATTGGTTATTCCTGTTGATATTTAATTGGATCTTGtt                                                                             >  2:1174857/1‑148 (MQ=255)                                                   tCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTa                                                                          <  1:68278/148‑1 (MQ=255)                                                   tCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTa                                                                          <  1:1082438/148‑1 (MQ=255)                                                    cAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTAc                                                                         >  2:754342/1‑148 (MQ=255)                                                       tACGAAGTATTATATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTCTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACaaa                                                                      >  1:1013803/1‑148 (MQ=255)                                                           aaGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATg                                                                  <  1:907489/148‑1 (MQ=255)                                                               aTTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTCTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTGATTCCCGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGa                                                              <  1:279598/148‑1 (MQ=255)                                                                   tataAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGGCTAg                                                          >  1:327105/1‑148 (MQ=255)                                                                    ataAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGa                                                         >  1:297814/1‑148 (MQ=255)                                                                     tacaTAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGAt                                                        <  1:1261693/145‑1 (MQ=255)                                                                     taAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTATTTTTTTTTGTCCCAACATCTTTTATATTATTCGTTATTCTTGTTGATATTTAATTGGATTTTGTTTTACAAATATGCAGACTTGAt                                                        >  2:1286160/1‑148 (MQ=21)                                                                     taAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGAt                                                        >  1:124633/1‑148 (MQ=255)                                                                      aaaTAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATa                                                       >  1:1000554/1‑148 (MQ=255)                                                                         tAGAGAACTGCAGTAAGCTATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATCCTGACGAGATAGcc                                                    <  2:1220780/148‑1 (MQ=25)                                                                         tAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGcc                                                    <  2:325829/148‑1 (MQ=255)                                                                         tAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGcc                                                    >  1:505184/1‑148 (MQ=255)                                                                            agaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTaa                                                 >  1:485927/1‑148 (MQ=255)                                                                                  gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGTATTTATGTCCCCACATCTTTTATCTTATTCTTTATTCCTGTTTATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGt                                           >  2:1207294/1‑148 (MQ=37)                                                                                  gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTTCTGTTGATATTTAAGTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATcct                                           >  2:16578/1‑146 (MQ=255)                                                                                  gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGt                                           <  1:1098850/148‑1 (MQ=255)                                                                                  gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGt                                           <  1:1067580/148‑1 (MQ=255)                                                                                  gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTACTTTATAGTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGt                                           >  2:1207173/1‑148 (MQ=255)                                                                                    agTAATATAGTTTCTAATTGAAATTTATCTTACTGCTGTTTTTTTAGCGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGCTGTTCAGTGACAAATATGCCGACTAGATAGCCTAATATCGTTg                                         <  2:584130/148‑1 (MQ=25)                                                                                    agTAAGATATTTTCTAATTGAAAATTATCTTACTGCTTTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTg                                         <  2:1256733/148‑1 (MQ=255)                                                                                      tAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCa                                       <  1:924723/148‑1 (MQ=255)                                                                                      tAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCa                                       >  2:1167154/1‑148 (MQ=255)                                                                                             ttttCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTg                                <  1:760373/148‑1 (MQ=255)                                                                                               ttgtAATTGAAAATTATCTTATCGCTCTTTTTTTTGGGATGTATGTCCCAACCTCTTGTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCt                              <  1:1198438/145‑1 (MQ=255)                                                                                                   aaTTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTg                          <  1:165288/148‑1 (MQ=255)                                                                                                        aaaaTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAc                     >  2:1198312/1‑148 (MQ=255)                                                                                                         aaaTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAcc                    >  2:786179/1‑148 (MQ=255)                                                                                                             ttttttACTGCTGTTTTTTTAGGAATTTTTGTCCCTACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCActc                <  1:755837/144‑1 (MQ=255)                                                                                                             tagcTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCTTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCActc                <  1:227347/145‑1 (MQ=255)                                                                                                             tATCTTACTTCTGTTTTTTTTGGGACTGTTGTCACAACCTCTTTTATATTATGCGTTATTCCTGTTGTTATTTAATTGGATTTTGCTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCActc                <  2:548770/148‑1 (MQ=255)                                                                                                             tATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGCACCActc                >  2:551465/1‑148 (MQ=255)                                                                                                             tATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCActc                <  2:97681/148‑1 (MQ=255)                                                                                                               tCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTa              <  2:124633/148‑1 (MQ=255)                                                                                                                   aCTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCTTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGa          <  1:986352/148‑1 (MQ=255)                                                                                                                     tgctgTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATACGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGAAt        >  1:547855/1‑148 (MQ=255)                                                                                                                          tttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGAATACGct   >  1:1250862/1‑148 (MQ=255)                                                                                                                           ttttttAGGGATTTTTGTCCCAACTTTTTTTATATGATTCGTTATTCCTGTTGATATTTAATTGGTACTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGAATACGctc  <  2:97353/148‑1 (MQ=255)                                                                                                                           ttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGAATACGctc  <  2:474494/148‑1 (MQ=255)                                                                                                                           |                                                                                                                                                    TGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGAATACGCTC  >  USA300TCH1516_ALE/1443617‑1443886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.