| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 34173 = | 73 (1.250) | 9 (0.160) | 5/248 | NT | 12.1% | coding (462/480 nt) | rlmH | Ribosomal RNA large subunit methyltransferase H |
| ? | USA300TCH1516_ALE | = 57858 | 61 (1.090) | intergenic (+304/+613) | USA300HOU_RS00240/USA300TCH1516_00049 | hypothetical protein/hypothetical protein | |||||
TGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/34314‑34173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttctGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTC < USA300TCH1516_ALE/57858‑57738 TGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTC < 2:553776/141‑1 TCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTG < 2:148793/141‑1 TTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTT < 2:534022/141‑1 TAAGCTTCTTAAAAACATAACAGCCATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCTCATCATTTATGATATGCTTCTGCGTATCGGTTAATGATGCGGTTTTTaatt < 2:43339/141‑5 CACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACA > 1:494811/1‑141 CACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACA > 1:94472/1‑141 CACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACA > 2:269236/1‑141 CTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATt > 1:79998/1‑140 CTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATA > 1:356618/1‑141 CTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATACTAAGTTCTTAGAAGCTTACAAAG > 2:162799/1‑141 ATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTC < 1:281766/141‑1 TGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/34314‑34173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttctGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTC < USA300TCH1516_ALE/57858‑57738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |