New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	34173 =	73 (1.250)	9 (0.160)	5/248	NT	12.1%	coding (462/480 nt)	rlmH	Ribosomal RNA large subunit methyltransferase H
	?	USA300TCH1516_ALE	= 57858	61 (1.090)					intergenic (+304/+613)	USA300HOU_RS00240/USA300TCH1516_00049	hypothetical protein/hypothetical protein

CAACTGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCTTTTT  >  USA300TCH1516_ALE/57718‑57998                                                                                                                                             |                                                                                                                                             caACTGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGc                                                                                                                                              >  1:111522/1‑141 (MQ=255)        aTTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCg                                                                                                                                       <  2:369606/141‑1 (MQ=255)          tAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTa                                                                                                                                     >  2:605181/1‑141 (MQ=255)                  tCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTCTTTTTCCAAACCCGCATCATTAACTGATAAGCAGAAGCGTATCACAAAt                                                                                                                             >  1:645568/1‑141 (MQ=255)                     gaagaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgat                                                                                                                          <  1:281766‑M2/141‑21 (MQ=255)                      aagaCGTGTCTAGTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTTTTCTTCTATAACTTTCTGTAGTTATTTTTCAAAAACCGAATCATTAACTGATAAGCAGACGCGTATCACAAATaaaa                                                                                                                         >  2:519324/1‑141 (MQ=255)                       agaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAAc                                                                                                                        <  2:96304/141‑1 (MQ=255)                        gaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACt                                                                                                                       >  2:530852/1‑141 (MQ=255)                              tCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaaaaaa                                                                                                                 <  1:42330/141‑1 (MQ=255)                               cTACTTTGTAAGCTTCTAAGAACTTATTCTATGATATAGCGTTGGAGTTTTGTTGTTCTTCTATAACTTTCTGTCGTTATTTTTCAAAAACCGCATCATTGACTGATAAGCAGAAGCTTAGCACAAATAAAACTAAAAAAt                                                                                                                <  1:166729/141‑1 (MQ=255)                                tACTTTGTAAGCATCTAAGAACTTATTATATGCTAAAGCCTTTGCGTTTTGTTGTTCTTCTATAAATTTCTGTAATAAAAAAAAAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATa                                                                                                               <  2:111522/141‑1 (MQ=37)                                 aCTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAg                                                                                                              <  2:273792/141‑1 (MQ=255)                                  cTTTGTAAGCTTCTAAGAACTTAGTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcag                                                                                                             >  2:162799‑M2/1‑108 (MQ=255)                                            ttCTAAGAACTTACTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataa                                                                                                   <  1:50786/141‑1 (MQ=255)                                               tAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATaaa                                                                                                                          <  2:670695/115‑1 (MQ=255)                                               tAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATaaa                                                                                                                          >  1:670695/1‑115 (MQ=255)                                                 aGAACTTATTATATCATATAGCGTTTGCGTTTTGTTGTTCTTCTATATATTTCTGTAGTGTTTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataatataa                                                                                              <  2:345747/141‑1 (MQ=39)                                                         ttatATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCCGAAGCGTATCACAAATAAAACTAAAAAAAAGATTGTGTATAATATAAaaggaagg                                                                                      >  1:364220/1‑141 (MQ=255)                                                          tataTGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAggg                                                                                     >  2:423828/1‑141 (MQ=255)                                                                 tataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcag                                                                              >  1:356618‑M2/1‑77 (MQ=255)                                                                 tataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTTTATAATATAAAAGGAAGGGATTtata                                                                              <  2:431678/141‑1 (MQ=255)                                                                 tataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTtata                                                                              >  1:318606/1‑141 (MQ=255)                                                                 tataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGAGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTtata                                                                              <  1:427166/141‑1 (MQ=255)                                                                 aatagCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcag                                                                              >  1:79998‑M2/2‑77 (MQ=255)                                                                  ataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTatat                                                                             >  1:444349/1‑141 (MQ=255)                                                                     gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCATTTATTTCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTCTATAATATAAAAGGAAGGGATTTATATTaa                                                                          >  2:441145/1‑141 (MQ=255)                                                                     gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTaa                                                                          >  2:228792/1‑141 (MQ=255)                                                                     gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTaa                                                                          >  2:76903/1‑141 (MQ=255)                                                                      cGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTGACTGATAAGCAGAAGCGTATCACAAATAAAAATAAAAAATCGGTTGTGTATAGTCTAGAAGAACGGGGTTAATATTaaa                                                                         >  2:29549/1‑141 (MQ=255)                                                                       gTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTaaaa                                                                        >  1:265625/1‑141 (MQ=255)                                                                        tttGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTGTCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAAt                                                                       >  2:174035/1‑141 (MQ=255)                                                                         ttGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAAtt                                                                      >  1:543578/1‑141 (MQ=255)                                                                            aGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTg                                                                   >  1:484129/1‑141 (MQ=255)                                                                             gTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGa                                                                  >  2:27514/1‑141 (MQ=255)                                                                             gTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGa                                                                  >  2:93571/1‑141 (MQ=255)                                                                              ttttGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGaa                                                                 >  1:241175/1‑141 (MQ=255)                                                                               tttGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGGTTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAAt                                                                >  2:193157/1‑141 (MQ=255)                                                                                ttgttgTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAAtt                                                               >  1:6576/1‑141 (MQ=255)                                                                                    tgttCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtg                                                           >  1:94472‑M2/1‑58 (MQ=255)                                                                                    tgttCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtg                                                           >  2:269236‑M2/1‑58 (MQ=255)                                                                                    tgttCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtg                                                           >  1:494811‑M2/1‑58 (MQ=255)                                                                                            tataAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATGTATATTAAAATTTTGAATTCAAAAATTTTTg                                                   >  1:45083/1‑141 (MQ=255)                                                                                                aaTTTGTGTATTTATTTTTCAAAAACTGCATCATTAACTGATAAGCAAAATCGTATCACAAATAAAACTAAAAAATAGATTGTGTATTATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAg                                               <  2:425649/141‑1 (MQ=255)                                                                                                  tttCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAggg                                             <  2:145679/141‑1 (MQ=255)                                                                                                       gTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAACGGGAAGCt                                        >  2:206355/1‑141 (MQ=255)                                                                                                        tAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGAAAGGGATTTATATTAAAATTTTAAATTCAAAAATTATTGAAAGGGAAGCTa                                       >  1:7965/1‑141 (MQ=255)                                                                                                            tATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAGATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCtt                                   <  1:446939/141‑1 (MQ=255)                                                                                                            tATTTTTCAAAAACCGCATAATTAATTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCtt                                   <  2:139194/141‑1 (MQ=255)                                                                                                            tATCTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATCAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCtt                                   <  1:500264/141‑1 (MQ=255)                                                                                                             aTTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTa                                  <  2:444349/141‑1 (MQ=255)                                                                                                               ttttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGa                                <  2:572618/141‑1 (MQ=255)                                                                                                               ttttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGGGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTTAAAGGTAAGCTACCTTAGa                                <  2:79027/141‑1 (MQ=255)                                                                                                                tttCAAAACCCGCATCATTAACTGAGAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGaa                               <  2:52333/141‑1 (MQ=255)                                                                                                                ttccAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGaa                               >  1:529596/4‑141 (MQ=255)                                                                                                                aattaaaaaccgcATCATTAACCGATACGCagaagcatatcataaatgatgaggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaatggctgttatgtttttaagaagctta                               <  2:43339‑M2/137‑112 (MQ=255)                                                                                                                  tCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGACAGGGAAGCTACCTTAGAAAt                             <  1:423828/141‑1 (MQ=255)                                                                                                                  tCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAAt                             >  1:210655/1‑141 (MQ=255)                                                                                                                  tCAAAAACCGAATACTTAGCTGATAAGCATAAGCATATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAAt                             <  2:95893/141‑1 (MQ=255)                                                                                                                     aaaaCCGCATCATAAACTGATAAGCAGAAGCGTATCACAAAAAAAACAAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGa                          <  2:375203/141‑1 (MQ=255)                                                                                                                      aaaCCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttttaagaagcttatcataa                         <  2:534022‑M2/141‑118 (MQ=255)                                                                                                                        aCCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATc                       <  1:428019/141‑1 (MQ=255)                                                                                                                              tcatTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTAAGAAATTGAATCTATGGc                 >  2:367725/1‑141 (MQ=255)                                                                                                                                 ttAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCAc              <  2:373761/141‑1 (MQ=255)                                                                                                                                  tAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACt             >  1:120888/1‑141 (MQ=255)                                                                                                                                  tAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGGATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACt             <  1:169324/141‑1 (MQ=255)                                                                                                                                   aaCTGATAAGCAGAAGGGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTa            <  2:581690/141‑1 (MQ=255)                                                                                                                                   aaCTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTa            <  2:188387/141‑1 (MQ=255)                                                                                                                                     gtGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  2:67921/140‑1 (MQ=255)                                                                                                                                     cTGATAAGCAGAAGGGTATCACAAATAAAACTACAAAATAGATTTTTTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  1:128035/141‑1 (MQ=255)                                                                                                                                     cTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  1:221692/141‑1 (MQ=255)                                                                                                                                     cTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  1:333245/141‑1 (MQ=255)                                                                                                                                     cTGATAAGCAGAAGCGTAGCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  2:640046/141‑1 (MQ=255)                                                                                                                                     atGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  2:215150/140‑1 (MQ=255)                                                                                                                                            gCAGAAGCGTATCACAAATAAAACTAAAAAAGAGGTTGTGTATAATATAAAAGGAAGGGATGTATATTTAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCtttt   >  2:283792/1‑141 (MQ=255)                                                                                                                                            gCAGAAGCGGATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCtttt   <  1:174035/141‑1 (MQ=255)                                                                                                                                             cagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttttaagaagcttatcataagtaatgaggttcatgatttttga  <  2:148793‑M2/141‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             CAACTGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCTTTTT  >  USA300TCH1516_ALE/57718‑57998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.