New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2870578	55 (0.940)	4 (0.070)	4/248	NT	7.0%	intergenic (‑46/+21)	mnmG/mnmE	tRNA uridine 5‑carboxymethylaminomethyl modification enzyme MnmG/tRNA modification GTPase MnmE
	?	USA300TCH1516_ALE	= 2870582	54 (0.970)					intergenic (‑50/+17)	mnmG/mnmE	tRNA uridine 5‑carboxymethylaminomethyl modification enzyme MnmG/tRNA modification GTPase MnmE

TTTAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCAATTTGTACCATATCCATAGGC  >  USA300TCH1516_ALE/2870446‑2870722                                                                                                                                         |                                                                                                                                             tttAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTccgt                                                                                                                                          <  1:10587‑M2/141‑5 (MQ=255) tttAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTccgg                                                                                                                                          <  1:390895‑M2/141‑5 (MQ=255)    cgccccacGTCTTGCCGATGCTAAACCTGCTTCTACACCTGAATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTa                                                                                                                                       <  1:250364/137‑1 (MQ=255)    aGCCCCACGTCTGGCAGATTCTAAACCTGCTTCTACACCTGCATGTCCCGTACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTa                                                                                                                                       <  2:455108/141‑1 (MQ=255)       accacGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGTACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGCCTAttt                                                                                                                                    >  2:322642/1‑141 (MQ=255)        ccacGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAACCCTCCTTATTTGATATCTTACTAGCCTTCTTCAGACGGTATTccgtcatgttc                                                                                                                                   <  1:266363‑M2/141‑12 (MQ=255)         cacGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCa                                                                                                                                  <  1:657208/141‑1 (MQ=255)           cGTCTTGCAGATGCTAAACCTGCTTCTACAACTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAAt                                                                                                                                <  1:534733/141‑1 (MQ=255)               ttGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACt                                                                                                                            >  1:252857/1‑141 (MQ=255)                 gCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTCTAAAAATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTAt                                                                                                                          >  1:134167/1‑141 (MQ=255)                 gCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTAt                                                                                                                          >  1:76798/1‑141 (MQ=255)                 gCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTAATTTGATATCTTACTAGGCTTCTTTGCAGGATATTCCGTCTTTTTCAATTACTAt                                                                                                                          >  2:283121/1‑141 (MQ=255)                       gCTAACCCTGCTTCTACCCCTTCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCt                                                                                                                    <  1:317089/141‑1 (MQ=255)                        cTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTa                                                                                                                   <  2:469702/141‑1 (MQ=255)                        cTAAACCTGCTGCTACACCTGCATGTCCCGCACCTATAACGATTACAGCATATTCTTGAAGCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCGATTTCAATTACTATTTACCTa                                                                                                                   <  2:558450/141‑1 (MQ=255)                                gctgctACACCTGCGCGGCCGGCACCTGTAACGAGTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTACTTAGGCCGGCATGCGGTCGATTTCAATTACTATTTACCTAAGCAAAAt                                                                                                           >  2:144396/1‑141 (MQ=255)                                gCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCGTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAAt                                                                                                           >  2:542765/1‑141 (MQ=255)                                   tctcacccTGCAGGTCCCGGACCTATAACGATTACATCATATTCTTGAACAACAATATAAACCTCCTTATTTGATATCCTACTAGCCTTCTTAAGACGGTATTCCGACTATTTCAATTACTATTTACCTAAGCATAATTGa                                                                                                        <  2:117976/135‑1 (MQ=255)                                    cTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGAc                                                                                                       <  2:86312/141‑1 (MQ=255)                                       cacCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACATCCTTATTTGTTATCTTACTAGCCTTCTTAAGACGGTATTCCGTCAATGCCAATTACTCTTTACCTAAGCAGAATTGACTGa                                                                                                    >  2:209749/1‑141 (MQ=255)                                       cacCAGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGa                                                                                                    >  2:480573/1‑141 (MQ=255)                                        cccagCATGTCCCGCACATATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCTTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGaa                                                                                                   <  2:465147/137‑1 (MQ=255)                                        cccTGCATGTCCCGGACCTATTACGATTACATCATATTCTTGAACCACAATATAACCCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGaa                                                                                                   <  2:356175/140‑1 (MQ=255)                                            gCATGTCCCGCACCTATAACGATTACATCATAGTCTGGAACCACAATATAAACCTCCTTATTTGATATCTGACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATGACTATTTAACTAAGCGGAAGTAACTGAATAAc                                                                                               >  1:86974/1‑141 (MQ=255)                                             cATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCGCCTTAGTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACt                                                                                              >  2:490340/1‑141 (MQ=255)                                              aTGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGAATAccgtcttaagaaggctagtaagatatcaaataaggaggtttatattgtg                                                                                             <  2:613301‑M2/141‑50 (MQ=255)                                               tGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTCCCTAAGCAGAATTGACTGAATAACTGa                                                                                            >  2:378091/1‑141 (MQ=255)                                               tGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCCGAGTTGACTGAATAACTGa                                                                                            >  1:49734/1‑141 (MQ=255)                                                gTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGAt                                                                                           >  1:693104/1‑141 (MQ=255)                                                   ccGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTACAATTACTATTTACCTCAGCAGAATTGACTGAATAACTGCTCGa                                                                                        >  1:472525/1‑141 (MQ=255)                                                   ccGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATCACGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGa                                                                                        <  1:540208/141‑1 (MQ=255)                                                     gCACCTAGAACGATTAAATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATg                                                                                      <  1:37652/141‑1 (MQ=255)                                                      cACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGACTTGACTGAATAACTGATCGATgg                                                                                     >  2:396111/1‑140 (MQ=255)                                                       aCCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAg                                                                                    <  2:62612/141‑1 (MQ=255)                                                         cTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATGGATGAGtt                                                                                  >  1:352944/1‑141 (MQ=255)                                                           ataACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTtca                                                                                <  1:288657/141‑1 (MQ=255)                                                                   tACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAGCTGATCGATGAGTTCATCACTTGc                                                                        >  2:9944/1‑141 (MQ=255)                                                                        catATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGtct                                                                   >  1:485787/1‑141 (MQ=255)                                                                         atatTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGtctc                                                                  <  1:311854/141‑1 (MQ=255)                                                                            ttgttgAACCACGTTATAATCCTCCTTATGTGATAACCTACTATCCTTCTTAAGACGGTATTccggattaagaagtctagtaagatatcaaataaggaggtttatattggggtccaagaatatgatgtaatcgttataggt                                                               >  2:216942‑M2/1‑62 (MQ=255)                                                                            ttCTTGAACCATAATCTAAACCTCCGTATTTGATATCTTACTAGACTTCTTAAGACGGAATAccgtcttaagaaggctagtaagatatcaaataaggaggtttatattgtggttcaagaatatgatgtaatcgttataggt                                                               >  1:551414‑M2/1‑62 (MQ=255)                                                                             tCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGCGTTCATCACTTGCATTATCACCa                                                              >  1:184961/1‑141 (MQ=255)                                                                              cTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCaa                                                             <  1:566372/141‑1 (MQ=255)                                                                                   aCCATAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAAtt                                                        <  2:614373/141‑1 (MQ=255)                                                                                     cacaGTTTAAACCTCTTTGTTTGATTTCCTACTAGCCTTCTTAAGACGGAATTccgtcttaagaaggatagtaagagatcaaagtaggaggtttatattgtggttcgagaatatgatgtaatcgttataggtgcgggacat                                                      >  1:613301‑M2/1‑53 (MQ=255)                                                                                        aacttaAACCTTCGTATTTGATATCTTACTAGTGTTCTTAAGACGGTATTCCGTCTATTTCGATTACTATTTACCTAAGCAGAATTGACTGAATAACTTATCGAGGAGTTCATCACTTGCAGTCTCACCAATAATTTCTcc                                                   <  2:89255/137‑1 (MQ=255)                                                                                        aacataAACCCCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTcc                                                   <  2:565353/138‑1 (MQ=255)                                                                                        aaTATAAACCTCCGTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTcc                                                   <  1:285228/141‑1 (MQ=255)                                                                                         atatAAACCTCCTTATTTGATACCTGACTAGCCTTCTTAAGACGGTATTCCGTCTGTTTAAATTAGTATTTACCTAAGCAGAATTGACTGAATAACTGATCGCTAAGTTCGACACTTCCAGTCTCACCAATAAGTTATcca                                                  >  2:201799/1‑140 (MQ=255)                                                                                                cctcctTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAGTTTCTCCTAATAttt                                           <  1:515536/141‑1 (MQ=255)                                                                                                    ctTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCa                                       >  1:4897/1‑141 (MQ=255)                                                                                                    ctTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCa                                       >  1:178487/1‑141 (MQ=255)                                                                                                       aTTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGt                                    >  2:442242/1‑141 (MQ=255)                                                                                                       aTTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGt                                    <  1:42427/141‑1 (MQ=255)                                                                                                       aTTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGt                                    >  1:343175/1‑141 (MQ=255)                                                                                                          tGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCt                                 <  1:480573/141‑1 (MQ=255)                                                                                                             tatCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTAATTAAGTCGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGt                              <  1:160063/141‑1 (MQ=255)                                                                                                                cTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTaa                           >  1:629186/1‑141 (MQ=255)                                                                                                                cTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACATAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCACGTTCTAGTTaa                           >  1:232358/1‑141 (MQ=255)                                                                                                                   aCTACCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATc                        <  2:428413/141‑1 (MQ=255)                                                                                                                           tcttAAGAAGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATAGACTGAATAACTGATCGATGAGTTCATCACTTGCATTCTCACCAATAATTTCTCCTAATATTTCCCAAGATCTAGTTAAATCACTTTGTa                >  2:511953/1‑141 (MQ=255)                                                                                                                               aaGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCAATTTGTACCat            <  2:605275/141‑1 (MQ=255)                                                                                                                                  aCGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCCATTTGTACGATATc         >  1:387519/1‑141 (MQ=255)                                                                                                                                    ggTTTTTCGTCGATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCAATTTGTACCATATCCa       <  1:124733/141‑1 (MQ=255)                                                                                                                                     gTATTccgtcttaagaaggctagtaagatatcaaataaggaggtttatattgtggttcaagaatatgatgtaatcgttataggtgcgggacatgcaggtgtagaagcaggtttagcatctgcaagacgtggtgctaaaaca      <  2:608733‑M2/141‑137 (MQ=255)                                                                                                                                         tCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCAATTTGTACCATCTCCAtcgtc  >  2:413177/1‑137 (MQ=255)                                                                                                                                         tCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCAATTTGTACCATATCCATAGGc  >  2:282035/1‑141 (MQ=255)                                                                                                                                         tCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCAATTTGTACCATATCCATAAGc  >  1:25827/1‑141 (MQ=255)                                                                                                                                         tCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTCCTCCTAATATTTCCCAAGTTCTAGTTAAATCACTTTGTACCATATCCATAGGc  >  2:360916/1‑141 (MQ=255)                                                                                                                                         tCCGTCTATTTCAATTACTATTGACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCCCCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCAATTTGTACCATATCCATAGGc  >  2:507397/1‑141 (MQ=255)                                                                                                                                         |                                                                                                                                             TTTAGCACCACGTCTTGCAGATGCTAAACCTGCTTCTACACCTGCATGTCCCGCACCTATAACGATTACATCATATTCTTGAACCACAATATAAACCTCCTTATTTGATATCTTACTAGCCTTCTTAAGACGGTATTCCGTCTATTTCAATTACTATTTACCTAAGCAGAATTGACTGAATAACTGATCGATGAGTTCATCACTTGCAGTCTCACCAATAATTTCTCCTAATATTTCCCAAGTTCTAGTTAAATCAATTTGTACCATATCCATAGGC  >  USA300TCH1516_ALE/2870446‑2870722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.