BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1974	2079 (1.090)	7 (0.000)	6/258	69.1	0.37%	intergenic (+207/+119)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
*	?	NC_012417	= 2041	1830 (1.040)	7 (0.000)	6/258	69.1	0.37%	intergenic (+274/+52)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 284 total aligned reads displayed.

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1824‑1974

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacccttaacAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  NC_012417/2041‑1902

tttttTTGGTGTTGTAGCTTACTTTTTGTTTTTCTATAAATATGGTGCTTTTGACGAGATGGAAGATAAATATGATTATTATGTTGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGT‑‑‑G‑‑‑AAG                                                                                                                                                        >  2:495481/6‑141

ttCTATTGGTGTTGTTGTTTACTTTTTGTTTTTTTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAG                                                                                                                                                        <  1:310969/139‑1

TCCTATTGGTGTTTTTGCTTACTTGTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAG                                                                                                                                                        <  1:786384/141‑1

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAG                                                                                                                                                        <  1:610807/141‑1

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAG                                                                                                                                                        >  1:200929/1‑141

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAG                                                                                                                                                        >  1:217146/1‑141

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAG                                                                                                                                                        >  1:683717/1‑141

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAG                                                                                                                                                        <  1:748935/141‑1

 tCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGA                                                                                                                                                       <  2:611213/140‑1

 tCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGA                                                                                                                                                       <  1:937465/140‑1

 CCTATTGGTGTTGTTGCTTACTTTTTTTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGA                                                                                                                                                       <  1:664032/141‑1

 CCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGA                                                                                                                                                       <  1:856924/141‑1

 CCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGA                                                                                                                                                       <  1:737712/141‑1

 CCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGA                                                                                                                                                       <  1:120862/141‑1

  CTATTGGTGTTGTTGCTTACTTTTTGTTTTTGTATAAACATGCTGTTTTTGCACAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAA                                                                                                                                                      <  1:468902/141‑1

  CTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTTTAAAGATGATGCTTTTGACTACATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATCGACGACGCATTTATGCCGAGAAATTTTATTGATGTTGA‑‑‑G‑‑‑AAGAA                                                                                                                                                      <  2:545632/141‑1

    ATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACC                                                                                                                                                    >  2:915662/1‑141

    ATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACC                                                                                                                                                    >  1:456556/1‑141

    ATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACC                                                                                                                                                    >  1:247617/1‑141

    ATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACC                                                                                                                                                    >  1:536587/1‑141

     TTGGTGTTGTTTCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCC                                                                                                                                                   <  1:717534/141‑1

     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGGCGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AATAAact                                                                                                                                                   >  2:492853/1‑138

     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCC                                                                                                                                                   <  1:30467/141‑1

     TTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCC                                                                                                                                                   <  1:781326/141‑1

     TTGGTGTTGTTGCTTACTTTTTGGTTTTCTATAACGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCC                                                                                                                                                   <  2:946571/141‑1

      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCT                                                                                                                                                  <  1:86752/141‑1

      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCT                                                                                                                                                  <  1:852021/141‑1

      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCT                                                                                                                                                  <  1:645798/141‑1

      TGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCT                                                                                                                                                  <  2:375451/141‑1

       tGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTT                                                                                                                                                 <  1:955838/140‑1

       GGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGCTGATGCTTTTTTCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGAGGGAGTTATGCCGAGAAAATTTATTGATGTTTA‑‑‑G‑‑‑AAGAAGCCTT                                                                                                                                                 >  2:408507/1‑141

       GGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTT                                                                                                                                                 >  1:424091/1‑141

       GGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTT                                                                                                                                                 <  1:268669/141‑1

       GGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATCTAGGCCGAGAAAATTTATTGTTGTTGA‑‑‑G‑‑‑AAGAAacatt                                                                                                                                                 >  1:805580/1‑136

       GGTGTTGTTGCTTAATCTTTGTTTTCCTATAAAGCTGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGCACCTTTAGAGATGTTTA‑‑‑G‑‑‑AAGAACGCTT                                                                                                                                                 >  2:949309/1‑141

        GTGTTGTTGCTTACTTTTTTTTTTTTTATAAAGAAGAAGCCGGCGACGAGATGGAACAAAAATATCATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTA                                                                                                                                                >  2:663111/1‑141

        GTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTA                                                                                                                                                >  1:138213/1‑141

         ttTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:344796/139‑1

         gGTTTTTTCTTACTGTTTGTTTTTTTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:688765/140‑1

         gGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:75995/140‑1

         TGTTTTTGCTTAATTTTTGTTTTTCTAAAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:909689/141‑1

         TGTTGTTGTGTGCTTTTTGTTTTTCTATAAGGATGATGGTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACaatttg                                                                                                                                               <  2:9839/141‑7

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTTACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGATAATTTATTGTTGTTTA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               >  1:40070/1‑141

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATACAAAATAGACGGCGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               >  2:673259/1‑141

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAc                                                                                                                                               >  1:836107/1‑140

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               >  1:871753/1‑141

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               >  1:360762/1‑141

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               >  1:160796/1‑141

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:780568/141‑1

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               <  1:628431/141‑1

         TGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAAACCTTAA                                                                                                                                               >  2:774326/1‑141

         TGTTGTTGCTTAATTTGTGTTTTTATATAGAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAA                                                                                                                                               <  2:807339/141‑1

          tTTGTTGCTTAATTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAAC                                                                                                                                              <  2:264027/140‑1

          tTTGTTGCATACTTTTTGTTTTTCTATAAAGATGATGTTGTTGACGAGATGGAATAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAACTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAAC                                                                                                                                              <  2:552754/140‑1

          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGGAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACAACGCTTTTATGCCGGGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGGACCCTTAAC                                                                                                                                              >  1:768327/1‑141

          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAAC                                                                                                                                              >  1:737051/1‑141

          GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACAAGATAGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAAC                                                                                                                                              <  2:390366/141‑1

          GTTGTTGCTTACTTTTTGTTTTTATATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAAC                                                                                                                                              <  1:175907/141‑1

                                                                            TATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGACGTTGA‑‑‑GCCTCGGAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACTTTCGTCTGCAAG                                                                               >  2:312807/1‑141

                                                                              gCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGACGTTGAGCCG‑‑‑CGGAACCCTTAACAATCCCAAAACTTGTCGAATGGACGGCTTAATAGCTCACCCTATGCCGCCATTCGTCTGCAAGTT                                                                             >  2:131666/2‑141

                                                                                                                                                  GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGCCATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT            >  2:384078/1‑141

                                                                                                                                                  GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAGGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT            >  2:215923/1‑141

                                                                                                                                                  GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT            >  2:464436/1‑141

                                                                                                                                                  GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT            <  1:328993/141‑1

                                                                                                                                                  GAACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATT            <  1:710878/141‑1

                                                                                                                                                   AACCCTTAACAATCGCAAAACTTGGCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           <  2:595320/141‑1

                                                                                                                                                   AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           <  1:97896/141‑1

                                                                                                                                                   AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTA           >  1:585670/1‑141

                                                                                                                                                   AACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGACTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGACATCAATTTTTTATTA           >  2:831313/1‑141

                                                                                                                                                    ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTCTGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCAACATAAATGCGTCGTCTATTTTTTATTAT          <  2:658189/141‑1

                                                                                                                                                    ACCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTCCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTAT          <  1:523403/141‑1

                                                                                                                                                     CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATC         <  2:484606/141‑1

                                                                                                                                                     CCCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTATATTTTTTATTATt         >  1:363460/1‑140

                                                                                                                                                      CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        >  2:628241/1‑141

                                                                                                                                                      CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        <  2:900121/141‑1

                                                                                                                                                      CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAATTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT        >  2:173883/1‑141

                                                                                                                                                      CCTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGATCACGCTATTCTGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCAATTTTTTATTATCT        >  2:210485/1‑141

                                                                                                                                                       CTTGACAATCCCAAATCTTGTCGACTGGTCGGCTTAATGGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTAAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       <  2:230499/141‑1

                                                                                                                                                       CTTAACAATCCCAAATCTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGTCTACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       <  2:698636/141‑1

                                                                                                                                                       CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       <  2:645607/141‑1

                                                                                                                                                       CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       <  2:481146/141‑1

                                                                                                                                                       CTTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATGCGGCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTT       >  2:799096/1‑141

                                                                                                                                                        TTAACAATCCCAAACCTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTC      <  1:817816/141‑1

                                                                                                                                                        TTAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTC      <  1:637833/141‑1

                                                                                                                                                         TAACAATCCCAATACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     <  2:153675/141‑1

                                                                                                                                                         TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTCCGGGAGTTACTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     >  1:230502/1‑141

                                                                                                                                                         TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     <  2:869212/141‑1

                                                                                                                                                         TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     <  2:100585/141‑1

                                                                                                                                                         TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     >  1:278961/1‑141

                                                                                                                                                         TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTAGTCTATTTTTTATTATCTTCA     >  1:484945/1‑141

                                                                                                                                                         TAACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGCCGTCTATTTTTTATTATCTTCA     >  1:448574/1‑141

                                                                                                                                                         TAACAATCCCAAAACTTGTCAAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA     >  2:730920/1‑141

                                                                                                                                                          AACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAT    <  2:883418/141‑1

                                                                                                                                                          AACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAT    <  1:369243/141‑1

                                                                                                                                                          AACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATACGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAT    >  2:724755/1‑141

                                                                                                                                                           ACAGTCCCAAAACTTGTCGAATGGTCGGCTTAATTGCTCAGGCTATGTTGAAATTCGTCTGCAAGTTTAGTTAAGGGTTCTGTTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   <  2:403062/141‑1

                                                                                                                                                           ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCAag   >  2:541016/1‑139

                                                                                                                                                           ACAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG   >  2:966498/1‑141

                                                                                                                                                            CAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  >  2:631048/1‑141

                                                                                                                                                            CAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  2:125415/141‑1

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGA‑‑‑G‑‑‑AAGAACCCTTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/1824‑1974

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacccttaacAATCCCAAAACTTGTCGAATGGTCGGCTTAATAGCTCACGCTATGCCGACATTCGTCTGCAAGTTTAGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGA  <  NC_012417/2041‑1902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.