BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1974	2079 (1.090)	7 (0.000)	6/258	69.1	0.37%	intergenic (+207/+119)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
*	?	NC_012417	= 2041	1830 (1.040)	7 (0.000)	6/258	69.1	0.37%	intergenic (+274/+52)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2098 total aligned reads displayed.

GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGA  >  NC_012417/1834‑2114

gttgttGCTTACTTTTTGTTTTTTTAAAAATATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                                              <  2:645058/141‑1 (MQ=255)

gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACAAGATAGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                                              <  2:390366/141‑1 (MQ=255)

 ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTGGAGAAGAACCCTTAACt                                                                                                                                             >  1:3174/1‑141 (MQ=255)

  tgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAGTTATTGATGTTTAGAAGAACCCTTAACTa                                                                                                                                            >  1:887687/1‑141 (MQ=255)

       cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACtt                                                                                                                                       >  2:11061/1‑141 (MQ=255)

        ttACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATACAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATATTGAGAAGAACCCTTAACTAAACTTg                                                                                                                                      >  1:432535/1‑141 (MQ=255)

          aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                                                    <  1:184491/141‑1 (MQ=255)

           ttttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAg                                                                                                                                   <  1:826231/140‑1 (MQ=255)

            tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                                                  >  1:242799/1‑141 (MQ=255)

            tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTAATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                                                  >  1:796113/1‑141 (MQ=255)

             ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                                                 >  1:55498/1‑141 (MQ=255)

               ttgtttgtCTATAAAGATGATGTTTTTGACGAGATGTAAGAAAAAGATGATTATGATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGa                                                                                                                               <  1:28191/141‑1 (MQ=37)

                 gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAATATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                                                             >  1:596620/1‑141 (MQ=255)

                   ttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGt                                                                                                                           >  1:96433/1‑141 (MQ=255)

                       ttataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                                                       <  2:814814/140‑1 (MQ=255)

                        tataAAGATGATGCTTTTGACGAGATGGAAGAAGAATGTGTATATCATGAAGATAGAAAAAAATATACGACCCATTTATGCCGAGAAACTTTATTGATGTTGAGAAAAACCCTTAACTAAGCTTGCAGACGAATGTCGGCa                                                                                                                      >  2:165406/1‑141 (MQ=255)

                         atgaaGACGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCAGGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                                     <  2:478775/138‑1 (MQ=255)

                         ataAAGATGATGCTTTTGACGAGATGGAAGGAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAGGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                                     >  2:296949/1‑141 (MQ=255)

                         ataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                                                     <  2:623295/141‑1 (MQ=255)

                          taAAGATGATGCTTTTGACGAGGACGAAGAGAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAtg                                                                                                                    >  1:732473/1‑140 (MQ=255)

                           aaaGATGATGCTTGCGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                                                   <  1:761112/141‑1 (MQ=255)

                            aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                                  >  1:636814/1‑141 (MQ=255)

                             aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                                                                                 <  2:585788/141‑1 (MQ=255)

                              gatgatGCTTTTGACGAGATGGAAGAAAAATATGATTATCAAGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTAACTAACCTTGCAGACGAATGTAGGCATAGCGt                                                                                                                >  2:225533/1‑141 (MQ=255)

                                tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAACGTGa                                                                                                              >  1:297556/1‑141 (MQ=255)

                                 gatgatTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                                                             <  1:10093/141‑1 (MQ=255)

                                 gatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                                                             <  1:778295/141‑1 (MQ=255)

                                  ttgtttttGACGAGAGTGAATAAAAATATGATTATCATTAAGATAATAAAAAAGAGACGACGCCTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGATTGTCGGCATAGCGTGAGc                                                                                                            <  2:912143/137‑1 (MQ=21)

                                  atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAgt                                                                                                            >  1:368150/1‑140 (MQ=255)

                                   tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCt                                                                                                           >  2:931349/1‑141 (MQ=255)

                                    gCTTTTGACGTGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                          <  1:454275/141‑1 (MQ=255)

                                    gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                          >  2:872694/1‑141 (MQ=255)

                                    gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                          >  1:26172/1‑141 (MQ=255)

                                    gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTGATGCCGAGAAAATTTATTGATGATGAGTAGAACCCTTAAGTGAAATTGGAGGCGAATATGGGCAAAGCATGAGCTa                                                                                                          >  2:250913/1‑141 (MQ=255)

                                     cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                         >  2:976792/1‑141 (MQ=255)

                                     cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                         >  2:604257/1‑141 (MQ=255)

                                       tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                                                                                       >  1:12088/1‑141 (MQ=255)

                                          gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCCGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                                                    >  1:33561/1‑141 (MQ=255)

                                           aCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                                                                                   >  2:664332/1‑141 (MQ=255)

                                           aCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGGGAGCTCTTAAGcc                                                                                                   >  1:950688/1‑141 (MQ=255)

                                              agaTGGAAGAAAAATATGATTGTCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAc                                                                                                <  2:286692/141‑1 (MQ=255)

                                                    aagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCg                                                                                          >  2:703924/1‑141 (MQ=255)

                                                          aaTATGTTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                                                    <  1:858444/141‑1 (MQ=255)

                                                          aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                                                    >  2:152118/1‑141 (MQ=255)

                                                             attaTTATCATGAAGACAATAAAAAATAGACGACGAATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                                 <  1:901479/138‑1 (MQ=255)

                                                               gATTATCATGAAGATAATAAAAAATAGACGATGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTgg                                                                               <  2:406164/141‑1 (MQ=255)

                                                               gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTgg                                                                               >  1:615714/1‑141 (MQ=255)

                                                                tttATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGGAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGATCATTCGACAAGTTTTggg                                                                              <  2:548390/140‑1 (MQ=255)

                                                                  tATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAt                                                                            >  2:562076/1‑141 (MQ=255)

                                                                          aGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAgg                                                                    >  2:179249/1‑141 (MQ=255)

                                                                            ataataAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGt                                                                  >  2:895021/1‑141 (MQ=255)

                                                                            ataataAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATGGTTAAGGGt                                                                  >  2:755891/1‑141 (MQ=255)

                                                                             taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGtt                                                                 >  1:97896/1‑141 (MQ=255)

                                                                             taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAACATTGGTCAAGTTTTGGGATTGTTAAGGGtt                                                                 <  2:456917/141‑1 (MQ=255)

                                                                              aataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                                                <  1:69085/141‑1 (MQ=255)

                                                                                 aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCTGa                                                             >  2:686873/1‑141 (MQ=255)

                                                                                 aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGATCGGa                                                             >  2:492306/1‑141 (MQ=255)

                                                                                   aaaaTTGACGACGCATTTATGCCGGGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCGGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                                           <  2:514363/141‑1 (MQ=255)

                                                                                        aGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCaa                                                      >  2:533603/1‑141 (MQ=37)

                                                                                         aacgacgGATTGATGACGATAAAATTTATTGATGTTGAGAAGAACCTTTAACTAAACTTGCAGACGAATGTCGGCAGAGCGTGAGCGATTAAGCCGACCATTCGACAAGTGTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                                     <  2:772491/140‑1 (MQ=11)

                                                                                           cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                                                   <  1:675559/141‑1 (MQ=33)

                                                                                               gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGTTATTAAGCCGACCATTCGACAAGTTTTGGGATGGTTAAGGGTTCCGAGGCTCAACGTCAAt                                               <  1:479638/141‑1 (MQ=17)

                                                                                               gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt                                               <  1:663068/141‑1 (MQ=32)

                                                                                                 aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa                                             <  1:396667/141‑1 (MQ=32)

                                                                                                  tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                                            <  1:17053/141‑1 (MQ=32)

                                                                                                  tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                                            <  1:208910/141‑1 (MQ=32)

                                                                                                  tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                                            >  1:226646/1‑141 (MQ=32)

                                                                                                    tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGTCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGc                                          <  1:522160/141‑1 (MQ=17)

                                                                                                    tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGc                                          <  2:383326/141‑1 (MQ=32)

                                                                                                     ttGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTACTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                                         <  2:320509/140‑1 (MQ=17)

                                                                                                     aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                                         <  1:382964/141‑1 (MQ=32)

                                                                                                     aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                                         >  1:921382/1‑141 (MQ=32)

                                                                                                       gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCAGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGTTTTGGGATTGTTAGGGGTTCCGAGACTCCACGTCCATAAAGCagt                                       >  2:718608/1‑139 (MQ=11)

                                                                                                        ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAtt                                      <  2:128830/141‑1 (MQ=32)

                                                                                                         cGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                                     <  1:814964/141‑1 (MQ=32)

                                                                                                          gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg                                    <  1:540158/141‑1 (MQ=32)

                                                                                                                  ttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACAATTCGACAAGTTTTGGGATTGTTAAGGGTTCGGAGGCTCAACGTCAATAAAGCAATTGGaataaatt                            >  1:578367/1‑140 (MQ=11)

                                                                                                                      tGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCATTTGGAATAAATAGTAt                        >  1:507923/1‑141 (MQ=21)

                                                                                                                      tGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTAt                        <  1:414038/141‑1 (MQ=34)

                                                                                                                       gATGGTGAGAATAACCCTTAACTAAACTTGCAGACGAATGGCGGCATATCTTGTGCTATTAAGCCGACCATTCGACAAGTTTTTTGATTGTTAAGGGTTCCGAGGCTCAGCGTCAATAAAGCAATTGTAATAAATAGTATc                       <  2:85270/141‑1 (MQ=11)

                                                                                                                        aTGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCt                      <  1:870907/141‑1 (MQ=35)

                                                                                                                             gagaAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGt                 <  1:708508/141‑1 (MQ=40)

                                                                                                                             gagaAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGt                 >  1:84170/1‑141 (MQ=40)

                                                                                                                              agaagaACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTa                >  2:434869/1‑141 (MQ=40)

                                                                                                                              agaagaACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTa                <  1:995638/141‑1 (MQ=40)

                                                                                                                               gaagaaCCATTAACTAAACTTGCATACGAATGTCGGCATAGCGGGAGCTATTAAGCCGGCCATTCGACAAGATTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTaa               >  2:731156/1‑141 (MQ=14)

                                                                                                                                 agaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAAcc             <  1:138613/141‑1 (MQ=255)

                                                                                                                                  gaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCGTTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATACAGCAATTGGAATAAATAGTATCTAAGCTAAccc            >  2:832368/1‑141 (MQ=255)

                                                                                                                                  gaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAAccc            <  2:953890/141‑1 (MQ=255)

                                                                                                                                  aaaCCCGTAACTAAACTTGCAGACGAAGGGCGGCATAGCGGGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGAAATTGGAATAAATAGTATCTAAAGTAAccc            <  1:152883/140‑1 (MQ=14)

                                                                                                                                   aaCCCTTAACTAATCTTGCGGACGAATGTCGGAATAGCGTGAGCTATTCAGCCGACCATTGGGCAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCg           <  2:791766/141‑1 (MQ=14)

                                                                                                                                     cccTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTa         <  1:490660/141‑1 (MQ=255)

                                                                                                                                      ccTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAt        <  1:350533/141‑1 (MQ=255)

                                                                                                                                      ccTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAt        >  1:74848/1‑141 (MQ=255)

                                                                                                                                       cTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAtt       >  2:271948/1‑141 (MQ=255)

                                                                                                                                       cTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAtt       <  2:211012/141‑1 (MQ=255)

                                                                                                                                        ttAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAttt      <  2:367566/141‑1 (MQ=255)

                                                                                                                                           aCTAAACTGTCGGGCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACTATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAg   <  2:344010/141‑1 (MQ=17)

                                                                                                                                            cTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGa  <  1:940994/141‑1 (MQ=255)

                                                                                                                                            cTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGa  <  1:65004/141‑1 (MQ=255)

GTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGA  >  NC_012417/1834‑2114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.