| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 52495 = | 76 (0.840) | 103 (1.140) +T |
4/278 | 9.4 | 58.9% | intergenic (+105/‑568) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 52988 | 69 (0.760) | intergenic (+598/‑75) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTG > USA300TCH1516_ALE/52360‑52630 | ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa > 1:774304/1‑141 (MQ=255)ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa < 1:316033/141‑1 (MQ=255)ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa < 1:900641/141‑1 (MQ=255)ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa < 2:427029/141‑1 (MQ=255)ttgtAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa < 2:841730/138‑1 (MQ=255) ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag < 1:149257/141‑1 (MQ=255) ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATCATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt < 2:953547/141‑1 (MQ=255) atAAAGAAATAGTTTTACACTGAAAATATTTAAAAATAAAATGAAAATTAATTAATAATAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt < 1:250549/140‑1 (MQ=255) tAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTg > 2:486979/1‑141 (MQ=255) aaaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa > 2:533529/1‑141 (MQ=255) aaaGAAATAGTTTTTCACAGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa > 2:553769/1‑141 (MQ=255) aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa > 1:701075/1‑141 (MQ=255) aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATAGTTTGaa > 2:915793/1‑141 (MQ=255) aTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcat > 2:62632/1‑141 (MQ=255) gTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt > 1:425715/1‑141 (MQ=255) gTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt > 2:447744/1‑141 (MQ=255) ttttCACTGAAAATATTTATGGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑AACGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag < 2:266848/141‑1 (MQ=255) ttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag > 1:879489/1‑141 (MQ=255) ttCACTGAAAATATTTATAGATATAATTACAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGGTTGAAATCCTGgcagta > 1:327725/1‑141 (MQ=39) gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:656216/1‑141 (MQ=255) gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:823000/1‑141 (MQ=255) gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:295738/1‑141 (MQ=255) gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGGCTAA‑ATCGTTCTGAAATACGAAAAATGTTTTGGAAATCGCGTTAAATAATAAGAGGAATGGTTTGAAATCATCGTAGTAAGcgag > 2:159634/1‑139 (MQ=38) aaaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc < 1:445900/141‑1 (MQ=255) actacttATAAATATAATTAAAATCAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCCTTCTGAAATACGAAAAATGTTGTGCAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa < 2:36107/136‑1 (MQ=37) aaaatTTATAGATATAATCAAAATTAATTAAGATTACGCCACGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCCTCGTAGTAATCGCGCGa < 1:110030/138‑1 (MQ=37) tatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa > 1:965971/1‑141 (MQ=255) ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc > 1:579673/1‑141 (MQ=255) tataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCa < 1:64469/141‑1 (MQ=255) aGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt < 2:926090/141‑1 (MQ=255) aGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt < 2:636490/141‑1 (MQ=255) aGATAAAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAGAAAGTT‑TTAAAGACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt < 1:677704/141‑1 (MQ=25) aattaattAATATTAAGCGAGGATAAGGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga < 1:91562/141‑1 (MQ=255) aattaattAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGTGCGTAAATCACGTGAAATAATCaga < 1:581710/141‑1 (MQ=255) ttattaagattaagCCAGGATAAGGTAGGCTTA‑ATCGTTCTGAAATACGAAAAATGGTTTGGAAATCGCGGGAAATTATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATGATCAGAGGa < 2:750054/139‑1 (MQ=21) aattaatATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa > 1:631789/1‑141 (MQ=255) aattaatATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa > 1:437624/1‑141 (MQ=255) aattaatATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAACACGTGAAAAAAACAGGGGaa > 2:97800/1‑141 (MQ=255) taatATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg < 1:417282/141‑1 (MQ=255) atatTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGTAAACGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 2:354814/141‑1 (MQ=255) atatTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 1:459190/141‑1 (MQ=255) atatTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 1:918410/141‑1 (MQ=255) atatTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 2:521300/141‑1 (MQ=255) atatTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 1:63042/141‑1 (MQ=255) atatTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 2:29676/141‑1 (MQ=255) tatTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt < 1:624822/141‑1 (MQ=255) tatTAAGCCAGGATAATGTAGTCTTA‑AACGTCAGGAAAGACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATGAGAGGAATGGttt > 2:912809/1‑141 (MQ=21) atTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg < 1:451151/141‑1 (MQ=255) atTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg < 2:351421/141‑1 (MQ=255) tAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAAGCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa < 1:186191/141‑1 (MQ=255) aGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGGGAAGTAATCAGAGGAATCGTTTGAAatcatc > 1:657610/1‑141 (MQ=255) gATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt > 2:202251/1‑141 (MQ=255) tAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCAAAGTAATCTCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag > 1:472204/1‑141 (MQ=255) gTATTCATA‑ATCGTTTTGAAATAAGAAAAATGTTGTGGTAATCGCGTGAAATAATCAGATGAATCGTTTGAAATAATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt < 2:773594/141‑1 (MQ=17) gTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt > 1:11566/1‑141 (MQ=255) gTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGCAGTAATCGCGCGAAAATCACGTGAAATAATCAGCGGCACCGTTTCAAAGCATCATAGTaac > 1:445667/1‑140 (MQ=18) gTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGAGTGCACTATTCAGAGGACTCGGGCGCTGGGATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAACTCATCGTAGTAAt > 1:234311/1‑141 (MQ=18) gTAGACTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATGATCAGAGGAATCGTTTGAAATCATCGTAGTAAt > 1:676981/1‑141 (MQ=255) tAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc > 2:273757/1‑141 (MQ=255) tA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa > 1:374144/1‑141 (MQ=255) tA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCACCGTGGTAAACGCGCGa > 1:310738/1‑141 (MQ=255) aa‑aTCTTTCTGAAATAAGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa < 2:299898/140‑1 (MQ=255) tCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaac > 1:174512/1‑140 (MQ=255) ggtaaTAAGAAAAGTGTTGTGGAAAGCGCGTGGAATAATCAGAGTAATCGTTTTAAATCATCGGAGTAATGGTGCGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt < 2:579673/138‑1 (MQ=14) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAGAATCACGTGa > 1:267230/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 2:533542/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 2:885551/1‑141 (MQ=255) aaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga > 1:777987/1‑141 (MQ=40) aaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga < 1:202251/141‑1 (MQ=40) aTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag < 1:273757/141‑1 (MQ=39) tgttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg < 1:124715/141‑1 (MQ=38) tgtagtGAAAATAGCGTGAAATAATGTGAGCAATCGTGTGAAATCATCGTAGTAATGGCGCGAAAATCACGTGAAATAATCAGAGGAATCATTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg < 2:732671/141‑1 (MQ=11) agttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg < 1:947373/140‑1 (MQ=38) ttagAAATAGCGTGAAAGAATCAGAGGATACTTTTGAAAACATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATc < 2:944942/138‑1 (MQ=11) gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc > 2:262370/1‑110 (MQ=38) gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaacc > 2:188783/1‑139 (MQ=25) ggAAATCGCGTGAAATAATCAGAGGAATCGTTTGa > 1:701921/1‑35 (MQ=37) aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg < 1:533542/141‑1 (MQ=32) aaTCGCCAGAAATAATCAAGAGAAACGTTTCAAATCATCGTAGAAATCGCGTGAAAATCACGTGAAATAATCAGATGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg < 2:437624/141‑1 (MQ=11) gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa < 1:894283/106‑1 (MQ=11) gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa > 2:894283/1‑106 (MQ=11) gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa < 1:533868/106‑1 (MQ=11) gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa > 2:359628/1‑106 (MQ=11) gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa > 2:533868/1‑106 (MQ=11) | TTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTA‑ATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTG > USA300TCH1516_ALE/52360‑52630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |