New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	52495 =	76 (0.840)	103 (1.140) +T	4/278	9.4	58.9%	intergenic (+105/‑568)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	= 52988	69 (0.760)					intergenic (+598/‑75)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

GAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG  >  USA300TCH1516_ALE/52850‑53128                                                                                                                                           |                                                                                                                                             tacacaatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAACCACCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCAAAAATcgc                                                                                                                                            <  2:238377/135‑1 (MQ=11)    atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAGATCATCGTAGTAAACGCGCGAAAATcgcggg                                                                                                                                         >  2:26011/1‑139 (MQ=12)       atcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaaa                                                                                                                                      >  1:572983/1‑141 (MQ=32)               aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATgg                                                                                                                              <  1:772317/141‑1 (MQ=37)                ctCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATTATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAATAATCGCGCGAACATCGCGTGAAATACTATGGt                                                                                                                             <  1:698954/140‑1 (MQ=255)                 tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTATGAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTa                                                                                                                            >  1:435287/1‑141 (MQ=255)                 tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTATGAAAACATCATAGTAATCGCGCGAAAACCGCGTGAAAGACTATGGtc                                                                                                                            >  1:369830/1‑140 (MQ=11)                 tCGCGCGAAAATCGAGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAAGATGAACCGTTTGAAAACATAGAAGCAGACGAGCAAAAATTGCGGGAAATACTaatgtg                                                                                                                            >  2:952208/1‑136 (MQ=11)                  cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGGGAAAATCGCGTGAAATACTAAGAGGGATGGTTTGAACTAATGTTCGGAATTGTGCGAAAATCGGGTGAAATGCTATGGTAg                                                                                                                           >  2:103144/1‑141 (MQ=14)                  cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATGGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGGGAAATAGTATGGTAg                                                                                                                           >  2:950879/1‑141 (MQ=255)                   gcgcgAAAATCGCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGGATCGTTTGAATTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAGTATGGTAGa                                                                                                                          >  2:237713/1‑141 (MQ=255)                   gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGa                                                                                                                          >  1:902934/1‑141 (MQ=40)                    cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGAc                                                                                                                         <  1:211609/141‑1 (MQ=40)                     gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                        <  1:873966/141‑1 (MQ=255)                       gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGt                                                                                                                      <  1:446104/141‑1 (MQ=255)                       gAAAACCGCGTGAAAGAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGt                                                                                                                      <  1:112763/141‑1 (MQ=255)                        aaaaTCGCGTGAAAGAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGtt                                                                                                                     <  1:694756/141‑1 (MQ=255)                            tCGCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAg                                                                                                                 <  1:912809/141‑1 (MQ=255)                             cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGt                                                                                                                <  1:999445/141‑1 (MQ=255)                                gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                             <  1:118107/141‑1 (MQ=255)                                aagAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                             <  1:714837/139‑1 (MQ=255)                                      taatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGGGGATCGTTTGAAATAATCGTAGTAATCGCGAGAAAATCCCGGGAAATAGTATTGTCGACGCTTTGAGAAAATTAATg                                                                                                       >  2:144325/1‑141 (MQ=14)                                      taatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAAGACAATGGTAGACGGATGGAGTAAATTAATg                                                                                                       >  1:840276/1‑141 (MQ=255)                                       aatAAGAGTAATCGTTTGAAATAATCGCAGGAATCGCGCGAAAAGCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATgg                                                                                                      <  1:369131/141‑1 (MQ=17)                                        atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTAGAGTAAATTAAgggg                                                                                                     >  1:91983/1‑140 (MQ=255)                                               gAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGGATCGTTTGAAATCATCGTAGGAATAGCGCGAAAATCGCGGGAAAGACTAAGAGAGATGGTTAGAGGAACTCAATGTAGTAtgtg                                                                                              >  2:64636/1‑138 (MQ=11)                                                   cGTTTGAAATCATCGTAGTGATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTGGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTATACGGTTTGAGTAACTTAATGTGGAATTTTAata                                                                                          >  2:556223/1‑141 (MQ=17)                                                    gTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTGTAatat                                                                                         >  1:645110/1‑141 (MQ=255)                                                     tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATAtt                                                                                        <  1:388420/141‑1 (MQ=255)                                                     tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACCAAGTTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATAtt                                                                                        <  1:683414/141‑1 (MQ=255)                                                          agtgagggtagtaGTCGCGCGAAAGACGCTGGAACTAATGAGAGGAAGCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATgg                                                                                   <  2:462241/134‑1 (MQ=21)                                                           atcaccGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGt                                                                                  <  1:419524/141‑1 (MQ=255)                                                                        tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATTGTTTGGAGGAATTGc                                                                     <  1:738758/141‑1 (MQ=255)                                                                        tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGc                                                                     <  1:69469/141‑1 (MQ=255)                                                                        tCGCGCGAAAATCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGc                                                                     <  1:655305/141‑1 (MQ=255)                                                                             cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTGAATATTGATGGTTTGGAGGAATTGCGTTGc                                                                >  2:891430/1‑141 (MQ=255)                                                                                 aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATag                                                            <  1:796450/141‑1 (MQ=255)                                                                                    cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATTTTTATGGTTTGGGGGAATTGCGTTGCGTAgaga                                                         >  2:870316/1‑141 (MQ=255)                                                                                    cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                         >  1:207052/1‑141 (MQ=255)                                                                                    cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATGTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                         >  2:802724/1‑141 (MQ=255)                                                                                           aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                                  <  1:4051/141‑1 (MQ=255)                                                                                           aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                                  <  1:943636/141‑1 (MQ=255)                                                                                           aataatCAGAGGAATCGGTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                                  <  1:40451/141‑1 (MQ=255)                                                                                           aataacCAGGGAAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                                  <  1:97171/141‑1 (MQ=255)                                                                                               atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAACATCGCGTGCAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatata                                              >  1:659474/1‑141 (MQ=255)                                                                                                          cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAg                                   >  1:856119/1‑141 (MQ=255)                                                                                                          cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTCGGAGGAGTTCTGGCGCGTTGAGAAAGTAAATATATAGAGTATAAg                                   >  2:205929/1‑141 (MQ=37)                                                                                                           gTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGa                                  <  1:231639/141‑1 (MQ=255)                                                                                                                 aagcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGGAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                            <  2:840276/138‑1 (MQ=255)                                                                                                                 aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                            <  1:144325/141‑1 (MQ=255)                                                                                                                  atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACg                           <  1:59568/141‑1 (MQ=255)                                                                                                                  atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACg                           <  2:264294/141‑1 (MQ=255)                                                                                                                        gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg                     <  1:533945/141‑1 (MQ=255)                                                                                                                        gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg                     <  1:362571/141‑1 (MQ=255)                                                                                                                        gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg                     <  1:687002/141‑1 (MQ=255)                                                                                                                              aTCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGGTTGAGTAAATTAATGGAGTAATTTAATATATATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTagc               >  2:147512/1‑139 (MQ=255)                                                                                                                                 gcgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTaa            >  2:375014/1‑141 (MQ=255)                                                                                                                                  cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAAt           <  1:419851/141‑1 (MQ=255)                                                                                                                                  cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAAt           <  1:64636/141‑1 (MQ=255)                                                                                                                                  cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAAt           <  1:134991/141‑1 (MQ=255)                                                                                                                                  cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAAt           <  1:134910/141‑1 (MQ=255)                                                                                                                                  cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGCAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAAt           >  1:535668/1‑141 (MQ=255)                                                                                                                                  cgcgAAAATCGCGTGAAATACTATGGAAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGGGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATTAGGAAAAGGATTATCTAAt           >  2:960437/1‑141 (MQ=255)                                                                                                                                   gcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATg          >  1:935994/1‑141 (MQ=255)                                                                                                                                   gcgAAAATCGCGTGAAATACTATGGTAGACGACGTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATg          >  1:885221/1‑141 (MQ=255)                                                                                                                                        aaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAtt     <  1:26099/141‑1 (MQ=255)                                                                                                                                          tCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAGGAAATCACGAAAAGGATTATCTAATGATATTTg   >  2:267512/1‑141 (MQ=255)                                                                                                                                           cgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATGGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTgg  <  2:369830/141‑1 (MQ=255)                                                                                                                                           cgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTgg  <  2:19860/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             GAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG  >  USA300TCH1516_ALE/52850‑53128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.