BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	580739 =	104 (1.150)	4 (0.050)	3/250	9.4	4.1%	intergenic (+33/‑48)	USA300HOU_RS02805/sigH	hypothetical protein/RNA polymerase sigma‑H factor
*	?	USA300TCH1516_ALE	580788 =	95 (1.170)	4 (0.050)	3/250	9.4	4.1%	coding (2/570 nt)	sigH	RNA polymerase sigma‑H factor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 107 total aligned reads displayed.

CATTAGATGATATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAA  >  USA300TCH1516_ALE/580603‑580879

cATTAGATGATATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAatat                                                                                                                                          >  2:584928/1‑141 (MQ=255)

 aTTAGATGATATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATAtt                                                                                                                                         >  1:560249/1‑141 (MQ=255)

  ttAGCTGATATAAGGGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTa                                                                                                                                        <  2:593993/141‑1 (MQ=255)

  ttAGATGATATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAACATTa                                                                                                                                        <  1:674855/141‑1 (MQ=255)

  ttAGATGATAAAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTa                                                                                                                                        <  2:420305/141‑1 (MQ=255)

      atgatATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACt                                                                                                                                    >  2:966650/1‑141 (MQ=255)

      atgatATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATATTCTGAAATCCTTGTAGAATTTAAAAAAATACGAATAGGACATCATAAGAACTGACATTTCCGTCATCTGGAAATTTTGAATGTAACAATATTAAACt                                                                                                                                    >  2:454482/1‑141 (MQ=255)

       tgatATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTACCAATATTAAAATa                                                                                                                                   >  2:127993/1‑141 (MQ=255)

       tgatATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTa                                                                                                                                   >  1:204271/1‑141 (MQ=255)

       tgatATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATATTGAATGTAACAATATTAAACTa                                                                                                                                   >  2:71719/1‑141 (MQ=255)

          tataAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAAATAAcc                                                                                                                                >  1:815464/1‑141 (MQ=255)

             aaGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTa                                                                                                                             >  1:186458/1‑141 (MQ=255)

             aaGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTAGAAATTTCGAATGTAACAATACTAAACTAACCTTa                                                                                                                             >  2:716449/1‑141 (MQ=255)

                tGAAAACAAGCCAAGAAGTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAAt                                                                                                                          <  1:2206/141‑1 (MQ=255)

                tGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAAt                                                                                                                          <  2:773644/141‑1 (MQ=255)

                tGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAAt                                                                                                                          <  2:570393/141‑1 (MQ=255)

                  aaaaCCAGCCAAGAACCCCAATTCCGTGATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAAttt                                                                                                                        <  1:402200/141‑1 (MQ=255)

                  aaaaCAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAGCCTTAAAttt                                                                                                                        <  1:720375/141‑1 (MQ=255)

                  aaaaCAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAAttt                                                                                                                        <  1:743830/141‑1 (MQ=255)

                  aaaaCAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAAttt                                                                                                                        <  2:906364/141‑1 (MQ=255)

                  aaaaCAAGCCAAGAACTCGAATTCCGTAATCTTCTGAAATCCTTAAAAAAAAAAAAAAAATACTAAGAGGACATCATATGCAATGACATTACCGGCATCTTGAAATTTTTAATGTAACAATATTAAACTAACCTTAAAttt                                                                                                                        <  2:956818/141‑1 (MQ=255)

                    aaCAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTta                                                                                                                      <  2:92056/141‑1 (MQ=255)

                     aCAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTtag                                                                                                                     <  1:846945/141‑1 (MQ=255)

                     aCAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTtag                                                                                                                     <  1:296573/141‑1 (MQ=255)

                     aCAAGCCAAGAACTCCAATTCCGTTATCTTCTGAAATGCTTGCTGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCACCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATCTtag                                                                                                                     <  1:700351/141‑1 (MQ=255)

                        aGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTtagatg                                                                                                                  >  1:457432/1‑140 (MQ=255)

                        aGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTAAAATTTtaaatg                                                                                                                  >  1:761904/1‑140 (MQ=255)

                        aGCCAAGAACTCGAATTCCGGAATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTtagata                                                                                                                  <  1:149757/141‑1 (MQ=255)

                         gCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTtagatag                                                                                                                 >  1:343148/1‑141 (MQ=255)

                         gCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTtagatag                                                                                                                 >  1:191112/1‑141 (MQ=255)

                         gCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTtagatag                                                                                                                 >  2:803565/1‑141 (MQ=255)

                             aGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTGGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAgg                                                                                                             >  2:672297/1‑141 (MQ=255)

                                aCTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGt                                                                                                          >  1:851483/1‑141 (MQ=255)

                                             tATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATAttt                                                                                             <  1:844251/141‑1 (MQ=255)

                                               tcttctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGa                                                                                           >  2:94493/1‑141 (MQ=255)

                                               tcttctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGa                                                                                           <  1:454897/141‑1 (MQ=255)

                                                  tctGACATCCGTGCAGAATTTGAAAAGATACGAAGAGGACATCATAAGAAATGACATGTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGCAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  2:268205/141‑1 (MQ=255)

                                                  tctGAAATCCTTGCAGGATGTGAAAATAGACGAAGAGGACATCATAAGAAATGACATTTCCGGCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  2:31824/141‑1 (MQ=255)

                                                  tctGAAATCCTTGCAGAATTTGATAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTTAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGAGTTAGTTTAATATTTGAAAt                                                                                        <  1:626319/141‑1 (MQ=255)

                                                  tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTCAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  1:504291/141‑1 (MQ=255)

                                                  tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGTGTTAGTTTAATATTTGAAAt                                                                                        <  1:602657/141‑1 (MQ=255)

                                                  tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  1:883646/141‑1 (MQ=255)

                                                  tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  1:105486/141‑1 (MQ=255)

                                                  tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  1:39912/141‑1 (MQ=255)

                                                  tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  1:705523/141‑1 (MQ=255)

                                                  tctGAAATCCTTGAAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTCTATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  2:164848/141‑1 (MQ=255)

                                                  tctAAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTCAACTTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                        <  1:945144/141‑1 (MQ=255)

                                                     gAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACg                                                                                     <  1:42964/141‑1 (MQ=255)

                                                     gAAAACCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACg                                                                                     <  1:17405/141‑1 (MQ=255)

                                                           cTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGa                                                                               >  1:15615/1‑141 (MQ=255)

                                                            ttGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGAc                                                                              <  1:964017/141‑1 (MQ=255)

                                                               cAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAAc                                                                           >  1:729892/1‑141 (MQ=255)

                                                               cAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAAc                                                                           <  1:570364/141‑1 (MQ=255)

                                                               cAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTCGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAAc                                                                           <  1:236541/141‑1 (MQ=255)

                                                                aGAAGTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTGGAATGTAACAATATTGAACTGACCTTAAATTTTAGATAGAAGGGGTTAGATTAATATTTGAAATCCGATTTGACatat                                                                          >  2:332296/1‑138 (MQ=255)

                                                                   aTTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGAAAACTCaa                                                                       >  2:589301/1‑141 (MQ=255)

                                                                               aCGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATc                                                           <  2:750788/141‑1 (MQ=255)

                                                                                  aaGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCaaa                                                        <  2:787107/141‑1 (MQ=255)

                                                                                  aaGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCaaa                                                        <  1:397609/141‑1 (MQ=255)

                                                                                  aaGAGGACATCATAAGAAATGAAATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCaaa                                                        <  2:823104/141‑1 (MQ=255)

                                                                                      ggaaaccatAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGCACAATCAAACGTa                                                    <  2:368236/135‑1 (MQ=255)

                                                                                       gACAGCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTaa                                                   <  2:759709/141‑1 (MQ=255)

                                                                                          atcatAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACaa                                                <  2:760071/141‑1 (MQ=255)

                                                                                           tcatAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAAt                                               >  1:347016/1‑141 (MQ=255)

                                                                                           tcatAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAAt                                               >  1:609655/1‑141 (MQ=255)

                                                                                            catAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGCAGGGGTTTGTTTAATTAAGGAAATACGATTTGTCATCTCAAGACAGTACACTCAAACGTAACAATg                                              <  2:956898/141‑1 (MQ=255)

                                                                                            catAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATg                                              <  2:54968/141‑1 (MQ=255)

                                                                                             atAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTCAATTTTAGATAGCAGGGGTTAGTTTAATACTTGAAATACGATTTGAAAACTCAGGACAGTACAAATAAACGGAAGAATGc                                             >  2:683261/1‑141 (MQ=255)

                                                                                                aGAAATGACATTTCCGTCATGTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATCCGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAAt                                          >  1:698219/1‑141 (MQ=255)

                                                                                                aGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAAt                                          >  1:146920/1‑141 (MQ=255)

                                                                                                 gAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATa                                         <  1:796499/141‑1 (MQ=255)

                                                                                                 aaaaTGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATa                                         <  1:840356/140‑1 (MQ=255)

                                                                                                       aCATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACCATGCAATAAATGaa                                   >  2:718502/1‑140 (MQ=255)

                                                                                                       aCATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGCGTTAATAAAATAGTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGAt                                   <  2:249548/141‑1 (MQ=255)

                                                                                                        cATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATCTTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAAAAATCCACTAAATtata                                  >  2:436517/1‑141 (MQ=255)

                                                                                                        cATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTGACGACCGTACAATCCTACGTAACAATGCACTAAACGATa                                  >  2:682357/1‑141 (MQ=255)

                                                                                                        cATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATa                                  <  2:31985/141‑1 (MQ=255)

                                                                                                         aTTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATaa                                 >  1:846661/1‑141 (MQ=255)

                                                                                                              cGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACt                            <  1:407356/141‑1 (MQ=255)

                                                                                                              cGTCAGCTTGAAATTTTGAATGTAACAATATTAAACTAACCTACAATTGTAGCTAGTAGGGGATAGTTTAATATTTGAAATACGACTTGACAACTCACGACAGTAGAATCAAACGTAACAATGCAATAAATGATAGCGACt                            <  2:390175/141‑1 (MQ=255)

                                                                                                                tCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAAAGATCAAAACtgt                          >  2:693811/1‑139 (MQ=255)

                                                                                                                gcATCTTGAAATTTTGAATGTAACAATATTAAATTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACAATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTc                          <  2:554378/140‑1 (MQ=255)

                                                                                                                    cTTGAAATTTTGAATGTAACCAAATTAAACGAACCGTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGaaa                      <  2:70314/141‑1 (MQ=255)

                                                                                                                    cTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGaaa                      <  1:357235/141‑1 (MQ=255)

                                                                                                                      tGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAg                    >  1:353078/1‑141 (MQ=255)

                                                                                                                      tGAAATTTTAAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAg                    >  1:729484/1‑141 (MQ=255)

                                                                                                                        aaaTTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGACTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGtt                  >  1:596530/1‑141 (MQ=255)

                                                                                                                         aaTTTTGAATTTAACAAGATTAAACAAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTa                 <  2:667870/141‑1 (MQ=255)

                                                                                                                         aaTTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTa                 <  1:898028/141‑1 (MQ=255)

                                                                                                                             ttGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAAAGCAATAAATGATAAAAACTTACAAAAGTTAGTaa             >  2:69135/1‑141 (MQ=255)

                                                                                                                             ttGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGAGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCATTAAATGATAAAAACTTCAAAAATGTAGTaa             >  2:531044/1‑141 (MQ=255)

                                                                                                                              tGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAAt            >  2:447239/1‑141 (MQ=255)

                                                                                                                                  tGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATggct        <  2:386476/141‑3 (MQ=255)

                                                                                                                                    tAACAATATTAAACTAAGCGTATATTTTAGATAGAAGGGGTTAGTTAAATATTTGAAATACGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCt      <  1:334369/141‑1 (MQ=255)

                                                                                                                                    tAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCt      >  1:981605/1‑141 (MQ=255)

                                                                                                                                    tAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGATAGTAATGAATCt      >  1:279403/1‑141 (MQ=255)

                                                                                                                                    tAAAAATATTAAACTAACCTTAAATTTTAGATAGAAGGTGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCt      <  1:51132/141‑1 (MQ=255)

                                                                                                                                     aaCAATATTAAACTAACCTAAAATTGTATATATAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTa     <  1:423850/141‑1 (MQ=255)

                                                                                                                                        aaTATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACaa  <  2:854916/141‑1 (MQ=255)

                                                                                                                                        aaTATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACaa  <  2:195542/141‑1 (MQ=255)

CATTAGATGATATAAGTGAAAACAAGCCAAGAACTCGAATTCCGTTATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAA  >  USA300TCH1516_ALE/580603‑580879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.