BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	580739 =	104 (1.150)	4 (0.050)	3/250	9.4	4.1%	intergenic (+33/‑48)	USA300HOU_RS02805/sigH	hypothetical protein/RNA polymerase sigma‑H factor
*	?	USA300TCH1516_ALE	580788 =	95 (1.170)	4 (0.050)	3/250	9.4	4.1%	coding (2/570 nt)	sigH	RNA polymerase sigma‑H factor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 105 total aligned reads displayed.

TATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGA  >  USA300TCH1516_ALE/580648‑580926

tATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATAttt                                                                                                                                            <  1:844251/141‑1 (MQ=255)

  tcttctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGa                                                                                                                                          <  1:454897/141‑1 (MQ=255)

  tcttctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGa                                                                                                                                          >  2:94493/1‑141 (MQ=255)

     tctGACATCCGTGCAGAATTTGAAAAGATACGAAGAGGACATCATAAGAAATGACATGTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGCAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  2:268205/141‑1 (MQ=255)

     tctGAAATCCTTGCAGGATGTGAAAATAGACGAAGAGGACATCATAAGAAATGACATTTCCGGCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  2:31824/141‑1 (MQ=255)

     tctGAAATCCTTGCAGAATTTGATAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTTAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGAGTTAGTTTAATATTTGAAAt                                                                                                                                       <  1:626319/141‑1 (MQ=255)

     tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTCAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  1:504291/141‑1 (MQ=255)

     tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGTGTTAGTTTAATATTTGAAAt                                                                                                                                       <  1:602657/141‑1 (MQ=255)

     tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  1:705523/141‑1 (MQ=255)

     tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  1:39912/141‑1 (MQ=255)

     tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  1:105486/141‑1 (MQ=255)

     tctGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  1:883646/141‑1 (MQ=255)

     tctGAAATCCTTGAAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTCTATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  2:164848/141‑1 (MQ=255)

     tctAAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTCAACTTTTAGATAGAAGGGGTTAGTTTAATATTTGAAAt                                                                                                                                       <  1:945144/141‑1 (MQ=255)

        gAAAACCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACg                                                                                                                                    <  1:17405/141‑1 (MQ=255)

              cTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGa                                                                                                                              >  1:15615/1‑141 (MQ=255)

               ttGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGAc                                                                                                                             <  1:964017/141‑1 (MQ=255)

                  cAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAAc                                                                                                                          >  1:729892/1‑141 (MQ=255)

                  cAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAAc                                                                                                                          <  1:802894/141‑1 (MQ=255)

                  cAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAAc                                                                                                                          <  1:570364/141‑1 (MQ=255)

                  cAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTCGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAAc                                                                                                                          <  1:236541/141‑1 (MQ=255)

                   aGAAGTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTGGAATGTAACAATATTGAACTGACCTTAAATTTTAGATAGAAGGGGTTAGATTAATATTTGAAATCCGATTTGACatat                                                                                                                         >  2:332296/1‑138 (MQ=255)

                      aTTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGAAAACTCaa                                                                                                                      >  2:589301/1‑141 (MQ=255)

                                  aCGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATc                                                                                                          <  2:750788/141‑1 (MQ=255)

                                     aaGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCaaa                                                                                                       <  1:397609/141‑1 (MQ=255)

                                     aaGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCaaa                                                                                                       <  2:787107/141‑1 (MQ=255)

                                     aaGAGGACATCATAAGAAATGAAATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCaaa                                                                                                       <  2:823104/141‑1 (MQ=255)

                                         ggaaaccatAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGCACAATCAAACGTa                                                                                                   <  2:368236/135‑1 (MQ=255)

                                          gACAGCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTaa                                                                                                  <  2:759709/141‑1 (MQ=255)

                                             atcatAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACaa                                                                                               <  2:760071/141‑1 (MQ=255)

                                              tcatAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAAt                                                                                              >  1:347016/1‑141 (MQ=255)

                                              tcatAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAAt                                                                                              >  1:609655/1‑141 (MQ=255)

                                               catAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGCAGGGGTTTGTTTAATTAAGGAAATACGATTTGTCATCTCAAGACAGTACACTCAAACGTAACAATg                                                                                             <  2:956898/141‑1 (MQ=255)

                                               catAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATg                                                                                             <  2:54968/141‑1 (MQ=255)

                                                atAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTCAATTTTAGATAGCAGGGGTTAGTTTAATACTTGAAATACGATTTGAAAACTCAGGACAGTACAAATAAACGGAAGAATGc                                                                                            >  2:683261/1‑141 (MQ=255)

                                                atAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATCGAAGGGGTTAGTTTAATATTTACAATACGATTTGACAACTCAAGACAGTACAATCCAACGTAACAATga                                                                                            >  2:265873/1‑140 (MQ=255)

                                                   aGAAATGACATTTCCGTCATGTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATCCGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAAt                                                                                         >  1:698219/1‑141 (MQ=255)

                                                   aGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAAt                                                                                         >  1:146920/1‑141 (MQ=255)

                                                    aaaaTGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATa                                                                                        <  1:840356/140‑1 (MQ=255)

                                                          aCATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACCATGCAATAAATGaa                                                                                  >  2:718502/1‑140 (MQ=255)

                                                           cATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATCTTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAAAAATCCACTAAATtata                                                                                 >  2:436517/1‑141 (MQ=255)

                                                           cATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTGACGACCGTACAATCCTACGTAACAATGCACTAAACGATa                                                                                 >  2:682357/1‑141 (MQ=255)

                                                           cATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATa                                                                                 <  2:31985/141‑1 (MQ=255)

                                                            aTTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATaa                                                                                >  1:846661/1‑141 (MQ=255)

                                                                 cGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACt                                                                           <  1:407356/141‑1 (MQ=255)

                                                                 cGTCAGCTTGAAATTTTGAATGTAACAATATTAAACTAACCTACAATTGTAGCTAGTAGGGGATAGTTTAATATTTGAAATACGACTTGACAACTCACGACAGTAGAATCAAACGTAACAATGCAATAAATGATAGCGACt                                                                           <  2:390175/141‑1 (MQ=255)

                                                                   tCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTc                                                                         <  1:347475/141‑1 (MQ=255)

                                                                   tCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAAAGATCAAAACtgt                                                                         >  2:693811/1‑139 (MQ=255)

                                                                   gcATCTTGAAATTTTGAATGTAACAATATTAAATTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACAATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTc                                                                         <  2:554378/140‑1 (MQ=255)

                                                                       cTTGAAATTTTGAATGTAACCAAATTAAACGAACCGTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGaaa                                                                     <  2:70314/141‑1 (MQ=255)

                                                                       cTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGaaa                                                                     <  1:357235/141‑1 (MQ=255)

                                                                         tGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAg                                                                   >  1:353078/1‑141 (MQ=255)

                                                                         tGAAATTTTAAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAg                                                                   >  1:729484/1‑141 (MQ=255)

                                                                           aaaTTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGACTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGtt                                                                 >  1:596530/1‑141 (MQ=255)

                                                                            aaTTTTGAATTTAACAAGATTAAACAAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTa                                                                <  2:667870/141‑1 (MQ=255)

                                                                            aaTTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTa                                                                <  1:898028/141‑1 (MQ=255)

                                                                                ttGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAAAGCAATAAATGATAAAAACTTACAAAAGTTAGTaa                                                            >  2:69135/1‑141 (MQ=255)

                                                                                ttGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGAGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCATTAAATGATAAAAACTTCAAAAATGTAGTaa                                                            >  2:531044/1‑141 (MQ=255)

                                                                                 tGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAAt                                                           >  2:447239/1‑141 (MQ=255)

                                                                                     tGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATggct                                                       <  2:386476/141‑3 (MQ=255)

                                                                                       tAACAATATTAAACTAAGCGTATATTTTAGATAGAAGGGGTTAGTTAAATATTTGAAATACGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCt                                                     <  1:334369/141‑1 (MQ=255)

                                                                                       tAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCt                                                     >  1:981605/1‑141 (MQ=255)

                                                                                       tAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGATAGTAATGAATCt                                                     >  1:279403/1‑141 (MQ=255)

                                                                                       tAAAAATATTAAACTAACCTTAAATTTTAGATAGAAGGTGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCt                                                     <  1:51132/141‑1 (MQ=255)

                                                                                        aaCAATATTAAACTAACCTAAAATTGTATATATAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTa                                                    <  1:423850/141‑1 (MQ=255)

                                                                                         aCAATATTAAACTAACCGTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTAc                                                   <  1:58376/141‑1 (MQ=255)

                                                                                           aaTATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACaa                                                 <  2:195542/141‑1 (MQ=255)

                                                                                           aaTATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACaa                                                 <  2:854916/141‑1 (MQ=255)

                                                                                              atTAAACTATCCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCa                                              <  1:855212/141‑1 (MQ=255)

                                                                                              atTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTCCTCTAAAACCAAACAGTGCAATAAATGATAAAGACTCCGACAAGTTAGTAATGGATCTACAACCa                                              <  1:933668/141‑1 (MQ=255)

                                                                                                  aaCTAACCTTAAATTTTAGATAGGAGGGGTTAGTTTAATATTTGAAATACGATTGGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGACAAGTTAGTAATGGATCTACAACCattaa                                          >  2:89695/1‑141 (MQ=255)

                                                                                                  aaCTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCattaa                                          >  1:579609/1‑141 (MQ=255)

                                                                                                  aaCTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCattaa                                          >  2:464910/1‑141 (MQ=255)

                                                                                                  aaCTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATCTGACAAATCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATATACAATCattaa                                          >  1:276931/1‑141 (MQ=255)

                                                                                                  aaCTAACCTTAAATTTGAGGTAGAAGGGGTTAGTTTAACATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCattaa                                          >  1:555517/1‑141 (MQ=255)

                                                                                                        acTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTc                                    <  2:761904/140‑1 (MQ=255)

                                                                                                         cTTATATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCg                                   <  1:666959/141‑1 (MQ=255)

                                                                                                          tgaaaTTTTAGAAAGAAGGGGTTAGTTTAATATTTGAAATACGTTTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGa                                  <  2:27501/139‑1 (MQ=255)

                                                                                                                tttAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATc                            <  2:53749/141‑1 (MQ=255)

                                                                                                                    tatagaACGCGTTAGTTGAATATTTGAAATACTATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAGTGATATAGAATTGGAAGGGTTAGCACTGGATCTACAACCATTAATTATTCGACGCATCaaaa                        <  2:486655/140‑1 (MQ=255)

                                                                                                                    gatagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCaaaa                        <  1:799800/141‑1 (MQ=255)

                                                                                                                     atagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAAc                       >  1:292369/1‑141 (MQ=255)

                                                                                                                     atagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAAc                       >  1:166455/1‑141 (MQ=255)

                                                                                                                     atagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAAc                       <  2:311586/141‑1 (MQ=255)

                                                                                                                      tagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACa                      <  1:966650/141‑1 (MQ=255)

                                                                                                                      aagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACGGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACa                      <  1:734103/140‑1 (MQ=255)

                                                                                                                      aagaAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACa                      <  1:454482/140‑1 (MQ=255)

                                                                                                                         aaGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACAttt                   >  1:83533/1‑141 (MQ=255)

                                                                                                                          acgggTTAGTTTAATAATTGAAATACGATTTTACAACTCAAGACAGTACAAGCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAAGGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTg                  <  2:2315/139‑1 (MQ=255)

                                                                                                                          aGGGGTTAGTTTAATATTTGCAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAACGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTg                  <  1:449919/141‑1 (MQ=255)

                                                                                                                          aGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTg                  <  1:13245/141‑1 (MQ=255)

                                                                                                                                tAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTa            <  1:219102/141‑1 (MQ=255)

                                                                                                                                  gTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATGAAAAGATTTGGAGTTAAt          >  2:715347/1‑141 (MQ=255)

                                                                                                                                  gTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAAt          >  2:222129/1‑141 (MQ=255)

                                                                                                                                  gTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCAGTAATTATTCGACGCATCAAAAAAATTGGAATTaac          >  2:576067/1‑140 (MQ=255)

                                                                                                                                      aaTATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCAtt      <  1:793937/141‑1 (MQ=255)

                                                                                                                                       atatTTGAAATAGGATTTTACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACCCAGTTTAATATTTGGATTTAATCATTa     <  2:457432/141‑1 (MQ=255)

                                                                                                                                          tttGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGa  <  1:803565/141‑1 (MQ=255)

                                                                                                                                          tttGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGa  <  2:191112/141‑1 (MQ=255)

                                                                                                                                          tttGAAATACGATTTGACAACTCAAGACAGGACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGa  <  2:343148/141‑1 (MQ=255)

TATCTTCTGAAATCCTTGCAGAATTTGAAAAAATACGAAGAGGACATCATAAGAAATGACATTTCCGTCATCTTGAAATTTTGAATGTAACAATATTAAACTAACCTTAAATTTTAGATAGAAGGGGTTAGTTTAATATTTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGA  >  USA300TCH1516_ALE/580648‑580926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.