BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 2352	1 (0.630)	6 (0.010)	5/258	70.3	0.63%	intergenic (+132/+36)	USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004	hypothetical protein/hypothetical protein
*	?	NC_012417	= 1963	1902 (1.080)	6 (0.010)	5/258	70.3	0.63%	intergenic (+196/+130)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2064 total aligned reads displayed.

TTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACC  >  NC_012417/1823‑2103

 tCCTATTGTTGTTGTGGTTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                                             <  2:495088/141‑1 (MQ=255)

 tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                                             >  1:362647/1‑141 (MQ=255)

  tcTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaaga                                                                                                                                            <  1:937465/140‑1 (MQ=255)

  tcTATTGGTGTTGTTGCTTACTTTTTGTCTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaaga                                                                                                                                            <  1:562314/140‑1 (MQ=255)

      ttGGTGTTGTTGTTTATTTTTTGTTTTTCTATAAAGATGATGCTTTTGAAAAAAAGAAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAccc                                                                                                                                        <  2:395582/141‑1 (MQ=38)

        ggTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCtt                                                                                                                                      >  2:940249/1‑141 (MQ=255)

        ggTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCtt                                                                                                                                      >  1:168309/1‑141 (MQ=255)

        ggTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATCTAGGCCGAGAAAATTTATTGTTGTTGAgaagaaacatt                                                                                                                                      >  1:805580/1‑136 (MQ=255)

           tttgttgCATACTTTTTGTTTTTCTATAAAGATGATGTTGTTGACGAGATGGAATAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAACTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                                   <  2:552754/140‑1 (MQ=38)

           gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                                   <  1:327851/141‑1 (MQ=255)

           ggtgctgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGATGAGATGGAAAAAAAATATGATTATAATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                                   <  2:159769/136‑1 (MQ=255)

            ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                                  <  1:125045/141‑1 (MQ=255)

            ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                                  <  1:153593/141‑1 (MQ=255)

              gttgGTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                                <  1:89540/141‑1 (MQ=255)

              gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTGGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCAGTTAGGCCGAGAAAATTTATTGATGGTGAGAAGAACCCTTAACTaa                                                                                                                                >  1:208564/1‑141 (MQ=255)

               ttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATTAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaa                                                                                                                               >  1:672293/1‑141 (MQ=255)

                 gCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATGGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                                             >  2:384784/1‑141 (MQ=255)

                 gCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                                             >  1:375975/1‑141 (MQ=255)

                 gCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAACCTTAACTAAACt                                                                                                                             >  2:218937/1‑141 (MQ=255)

                 gCTTACTTTTTGTTTTTCCATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACt                                                                                                                             >  2:137859/1‑141 (MQ=255)

                  cTTACTTTTTGTTTTTCTATAAAGATGATGCCTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAACCtt                                                                                                                            >  1:310218/1‑141 (MQ=255)

                    tACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCATTAACTAAACTTGc                                                                                                                          >  1:344233/1‑141 (MQ=255)

                     aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                                         >  1:833123/1‑141 (MQ=255)

                     aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                                         >  2:352064/1‑141 (MQ=255)

                     aCTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATCTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCa                                                                                                                         <  2:704476/141‑1 (MQ=255)

                        ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                                      <  1:820945/141‑1 (MQ=255)

                               tttCTATAAAGATGATGCTTTTGATGGGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                               <  2:978098/141‑1 (MQ=255)

                                 tttttaAAGATGATGCTGTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAATATAGACGACTTTTTTTTTTTTTTAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTAgg                                                                                                             >  2:915497/5‑141 (MQ=21)

                                 tCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCgg                                                                                                             <  1:744981/141‑1 (MQ=255)

                                  ttataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                                            <  2:814814/140‑1 (MQ=255)

                                  cTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGc                                                                                                            <  1:916986/141‑1 (MQ=255)

                                   tataAAGATTATGCTTTTTACGAGATGTAAAAAAAATTTGATTAGCATGAAAATAATAAAAAATAGACGACTCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGGCGGCa                                                                                                           <  1:446439/141‑1 (MQ=21)

                                   tataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCCGACGAATGTCGGCa                                                                                                           >  1:428493/1‑141 (MQ=255)

                                   tataAAGATAATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGACTGTCGGCa                                                                                                           >  2:242231/1‑141 (MQ=255)

                                     taAAGATGATTCTTTTGACGAGATGGAAGAAAAATATGATTATGCTGCTGCTTTTGAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                                         <  1:276363/141‑1 (MQ=21)

                                     taAAGATGATGCTTTTGACGATATGCGACAAAAATATGATTATCAAGAAGAGAATAAAAAAGAGTCGACGCACTGATGTTGAGAAAATTTATGGATCTTGAGAAGAACAGTTTGCTAGACTTGCCGACGAATGACGGcttg                                                                                                         <  2:374396/141‑4 (MQ=255)

                                     taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                                         >  1:39374/1‑141 (MQ=255)

                                     taAAGATGATGCTGTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATa                                                                                                         >  2:608107/1‑141 (MQ=255)

                                       aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                       >  1:407379/1‑141 (MQ=255)

                                        aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                                                                      <  1:589707/141‑1 (MQ=255)

                                        aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                                                                      >  2:772906/1‑141 (MQ=255)

                                        aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                                                                      <  1:470001/141‑1 (MQ=255)

                                            gatgatTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAg                                                                                                  <  1:10093/141‑1 (MQ=255)

                                                cTTTTGACGAGATGGAAGAAACATGTGATTATCATGAAGAGAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGGATGTCGGCATAGCGTGAGCTAt                                                                                              >  2:467216/1‑141 (MQ=255)

                                                 ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAGAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAGGAACCCTTAACTAAACTTGCAGACGAAGGTCGGCATAGCGTGAGCTAtt                                                                                             >  2:407530/1‑141 (MQ=255)

                                                    tGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                                                                          <  1:610021/141‑1 (MQ=255)

                                                     gACGAGATGGATGATAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                                         <  1:689582/141‑1 (MQ=255)

                                                      aCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                                                                        >  2:664332/1‑141 (MQ=255)

                                                         agaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAc                                                                                     >  2:734005/1‑141 (MQ=255)

                                                             ggAAGAAAAATATGGTGATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACCAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAtt                                                                                 >  1:552253/1‑141 (MQ=255)

                                                              gaagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTc                                                                                >  2:625271/1‑141 (MQ=255)

                                                                 gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                             <  1:138869/141‑1 (MQ=255)

                                                                 gaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                             >  2:838776/1‑141 (MQ=255)

                                                                   aaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACaa                                                                           >  1:629420/1‑141 (MQ=255)

                                                                    aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAg                                                                          >  2:441536/1‑141 (MQ=255)

                                                                     aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTCTGCCGACAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                                         <  1:974559/141‑1 (MQ=255)

                                                                      atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                                        >  1:497037/1‑141 (MQ=255)

                                                                       tatGATTATCATGAAGATAATAAAAAATAGAGGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTCAACTTGCAGATGTTGGTCGACTTAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                                       >  2:953197/1‑141 (MQ=18)

                                                                       tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGttt                                                                       <  2:786913/141‑1 (MQ=255)

                                                                       tatGATGATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGAGGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGGCGACCATTCGACAAGttt                                                                       <  1:240537/141‑1 (MQ=255)

                                                                        ttaaTTATCAATAAGACAATAAAAAATAGACGAGACATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGGCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                      <  2:900357/138‑1 (MQ=14)

                                                                        atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                      <  2:564591/141‑1 (MQ=255)

                                                                        atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                                      <  1:8774/141‑1 (MQ=255)

                                                                         tGATTATCATGAAGATAATAAAAAATAGGCGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTg                                                                     <  2:718618/141‑1 (MQ=255)

                                                                          gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTgg                                                                    >  1:864292/1‑141 (MQ=255)

                                                                               tCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTg                                                               >  2:125415/1‑141 (MQ=255)

                                                                                 aTGAAAATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGtt                                                             <  2:879833/141‑1 (MQ=255)

                                                                                  tGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTa                                                            <  2:174290/141‑1 (MQ=255)

                                                                                    aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAAAGCGTCGGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                                          >  1:183860/1‑141 (MQ=255)

                                                                                         aataaAAAATAGGCGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                                     <  2:481732/141‑1 (MQ=255)

                                                                                            aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCTGa                                                  >  2:686873/1‑141 (MQ=255)

                                                                                            aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCAGACCATGCGACAAGTTTTGGGATTGTTAAGGGTTCCGa                                                  >  2:299743/1‑141 (MQ=255)

                                                                                                  tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                                            >  1:532470/1‑141 (MQ=38)

                                                                                                    gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                          >  1:296422/1‑141 (MQ=35)

                                                                                                    gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGGTAAGGGTTCCGAGGCTCAAc                                          >  1:758725/1‑141 (MQ=25)

                                                                                                     acgacgCATTTATTCCGAGAAAATTTATTGATGTAGAGAAGAACCCTTAACTAAACTTCCACACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGATATGGGATTGGTAAGGGTTCCGAGACGCaaga                                         >  2:64783/1‑139 (MQ=11)

                                                                                                     acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGGCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                                         >  2:20232/1‑141 (MQ=25)

                                                                                                     acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                                         <  2:327689/141‑1 (MQ=35)

                                                                                                         cgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCAGACCATTCGCCAAGTTTTGGGATTGTTAAGGGTTCCGAGGCGCAACGTCaa                                     <  1:728798/141‑1 (MQ=12)

                                                                                                             tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAACCGGCCCTATCAACGAGTGTTGGGCTTGTTAATGGTTCCGAGGCTCAACGTCATTaaa                                 >  1:225888/1‑141 (MQ=11)

                                                                                                              ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGATCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg                                <  2:517479/141‑1 (MQ=17)

                                                                                                              ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACAATTAGACAAGATTTGGGATTGTTAAAGGTTCCGGGGCTCAACGTCAATaaaa                                >  2:105124/1‑140 (MQ=11)

                                                                                                                 tGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCaa                             <  1:851934/141‑1 (MQ=32)

                                                                                                                  gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                            <  2:536587/141‑1 (MQ=32)

                                                                                                                  gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                            >  2:860370/1‑141 (MQ=32)

                                                                                                                   ccGAGAAAATTTAGTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAtt                           <  1:790600/141‑1 (MQ=17)

                                                                                                                    cGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                          <  2:588881/141‑1 (MQ=32)

                                                                                                                     gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTgg                         <  1:483231/141‑1 (MQ=32)

                                                                                                                       gaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaa                       >  1:991524/1‑141 (MQ=11)

                                                                                                                               aTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGt               <  1:645607/141‑1 (MQ=32)

                                                                                                                               aTTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGCTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGt               >  2:271529/1‑141 (MQ=17)

                                                                                                                                  gATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATc            <  1:959522/141‑1 (MQ=35)

                                                                                                                                   aTGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGACTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCt           <  1:661412/141‑1 (MQ=25)

                                                                                                                                      ttGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTaaa        >  2:286471/1‑141 (MQ=38)

                                                                                                                                      ttGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATATaag        >  1:257034/1‑140 (MQ=25)

                                                                                                                                        gagaAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGt      >  1:773123/1‑141 (MQ=40)

                                                                                                                                        gagaAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGt      <  1:706374/141‑1 (MQ=40)

                                                                                                                                         agaagaACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTa     >  1:947478/1‑141 (MQ=40)

                                                                                                                                          gaagaaCCCTTAGCTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTaa    >  1:515952/1‑141 (MQ=255)

                                                                                                                                            agaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAAcc  <  2:758297/141‑1 (MQ=255)

TTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACC  >  NC_012417/1823‑2103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.