New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 438110 (2.380)54 (0.040) 21/256 0.0 4.1% intergenic (+346/‑119) USA300HOU_pUSA300HOUMR0006/cadR hypothetical protein/cadmium binding protein
?NC_012417 = 1975 2506 (0.900)intergenic (+208/+118) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 184 total aligned reads displayed.

AAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/4291‑4381
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagttt‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAA  <  NC_012417/1975‑1835
                                                                                                                                                                                                                                                     
AAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑C                                                                                                                                                            <  2:389859/85‑1
     TATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTA                                                                                        >  2:562667/1‑141
          ATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATT                                                                                      >  1:43706/1‑141
                AGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTT                                                                                   >  3:366427/1‑141
                  AAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTA                                                                                 >  3:160368/1‑141
                       CCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑C                                                                                                                                                            >  1:929695/1‑62
                           TAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA                                                                        >  1:881935/1‑141
                           TAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGGCGTCTATTTTTTATTATCTTCA                                                                        >  4:211496/1‑141
                           TAACTAAACTTGCAGACGAATGTCGGAATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCA                                                                        >  4:130869/1‑141
                             ACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATt                                                                      >  4:240010/1‑140
                             ACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG                                                                      >  4:9032/1‑141
                             ACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATG                                                                      >  1:493425/1‑141
                                AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGGAAT‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTATCGGCATAAATGCGTCGTCAATTTTTTATTATTTTCATGATA                                                                   >  1:353665/1‑141
                                AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATA                                                                   >  1:384009/1‑141
                                AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATA                                                                   >  3:133193/1‑141
                                AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATA                                                                   >  2:544957/1‑141
                                 AACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAA                                                                  >  2:657211/1‑141
                                  ACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATT                                                           >  1:486680/1‑141
                                   CTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGA‑CATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT                                                            >  4:84887/1‑141
                                     TGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGA‑CATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTT                                                          >  1:703420/1‑141
                                      GCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATA                                                             >  2:253216/1‑141
                                      GCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTC                                                       >  1:178940/1‑141
                                      GCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATACGTCGTCTATTTTTTATTATCTTCATGATAATCATCTTTTTC                                                       >  2:984082/1‑141
                                       CAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATAT                                                            <  1:657211/141‑1
                                        AGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATT                                                           >  2:841546/1‑141
                                             AATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCC                                                   >  3:432103/1‑141
                                             AATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCC                                                   >  1:260677/1‑141
                                             AATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC                                                >  3:141615/1‑141
                                             AATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑C                                                                                                                                                            <  2:872248/40‑1
                                             AATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑C                                                                                                                                                            >  1:872248/1‑40
                                                 TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGT                                                                                           <  4:28974/97‑1
                                                 TCGGCATAGCGTGAGCTATTAAGCCGACCATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGT                                                                                           >  3:28974/1‑97
                                                  CGGCATAGCGTGAGCTATTAAGCCGACCATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTC                                                    >  3:5091/1‑135
                                                     CATAGCGTGAGCTATTAAGCCGACCATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTC                                           >  2:337570/1‑141
                                                      ATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑ACTGCAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCA                                          >  2:734983/1‑141
                                                      ATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCATCAAAA                                       >  1:23186/1‑141
                                                      ATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATGTTTCTTCCATCGCGTCAAAA                                       >  4:424282/1‑141
                                                      ATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTGT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAA                                       >  2:146043/1‑141
                                                       TAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑TCTGCAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATCATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAA                                         >  1:956516/1‑141
                                                        AGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGC                                     <  4:171817/141‑1
                                                         GCGTGAGCTATTAAGCCGACCATTCGTCTG‑‑‑CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGGTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGGCGTCTATCTTTTATCCTCTTCATGATGATCATATTTATCTTCCATCTCGTCTAAA                                       >  2:28428/1‑141
                                                                CTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTTTGGG‑ATTGTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCAT                                   <  1:544957/141‑1
                                                                                          CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA         <  2:782420/141‑1
                                                                                          CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA         >  1:466073/1‑141
                                                                                          CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA         >  4:410977/1‑141
                                                                                          CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA         >  4:81535/1‑141
                                                                                          CAAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAA         <  1:536153/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  2:897192/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  1:302372/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  1:81184/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  1:750342/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  4:268670/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  1:130185/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  2:937045/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  3:355828/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  1:132405/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  3:249552/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTTAAGAATTCTACTCAACATCAATAAATTTTCTAGGCATAAATGCGGCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  3:176972/141‑1
                                                                                           AAGTTT‑‑‑‑‑A‑‑GTCAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        >  1:905719/1‑141
                                                                                           AAGTTT‑‑‑‑‑A‑‑GGTAAGGGTTATTATCAACATCAATAAATTTTCTCCGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAG        <  1:394425/141‑1
                                                                                            AGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGC       <  1:503052/141‑1
                                                                                            AGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGC       >  1:641017/1‑141
                                                                                            AGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTA                           >  2:208723/1‑121
                                                                                            AGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTA                           <  1:208723/121‑1
                                                                                            AGTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCT                                                                           >  4:362576/1‑73
                                                                                            AGTTT‑‑‑‑‑A‑‑GTTAAGAGGTCTTCTCAACATCAATAAATTTTCTCGGCATAAATTCTACGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATTTTTATAGAAAAACAAAAAGTAAGa       >  2:104395/1‑140
                                                                                             GTTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCA      <  2:1020297/141‑1
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAA     >  2:833183/1‑141
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAA     <  1:720726/141‑1
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAA     >  2:345219/1‑141
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAA     >  2:272333/1‑141
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAA     >  1:672849/1‑141
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAA     >  1:947002/1‑141
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAATAAGCAA     >  1:851148/1‑141
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAA              <  3:12152/132‑1
                                                                                              TTT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATC                                                >  2:491220/1‑98
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGTGTTCTTATCAAAATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATGTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTAAAAAAAAAAAAAAAGTAAGCAAC    <  2:598461/141‑1
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    <  4:169562/141‑1
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    >  1:106536/1‑141
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    <  4:111099/141‑1
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    >  1:857483/1‑141
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    >  3:13940/1‑141
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    <  2:697266/141‑1
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    >  1:946426/1‑141
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    >  2:206919/1‑141
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAAAAAAACAAAAAGTAAGCAAC    <  4:326049/141‑1
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCA                                    >  3:96943/1‑109
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAA                                       <  1:1017058/106‑1
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGAGAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAACTAAGCAAC    >  4:429249/1‑141
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGCCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    <  2:627281/141‑1
                                                                                               TT‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATACGTCTTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGTAAC    >  1:524031/1‑141
                                                                                               TT‑‑‑‑‑A‑‑GTTAAAGGTTCTTCTCAACATCAATAAATTTTCTCGTCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATATCATCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAAC    <  4:22341/141‑1
                                                                                                T‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACA   <  1:859039/141‑1
                                                                                                T‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACA   >  3:74792/1‑141
                                                                                                T‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACA   <  1:839023/141‑1
                                                                                                T‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACA   >  1:775527/1‑141
                                                                                                T‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAA             <  2:804009/131‑1
                                                                                                T‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTAGTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACA   >  3:265709/1‑141
                                                                                                T‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTGCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACA   <  1:187774/141‑1
                                                                                                T‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTAAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAAAAAAAAAAAAAGTAAGCAACA   <  2:360097/141‑1
                                                                                                                                                                                                                                                     
AAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCG‑‑‑A‑‑‑CAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/4291‑4381
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagttt‑‑‑‑‑A‑‑GTTAAGGGTTCTTCTCAACATCAATAAATTTTCTCGGCATAAATGCGTCGTCTATTTTTTATTATCTTCATGATAATCATATTTTTCTTCCATCTCGTCAAAAGCATCATCTTTATAGAAAAACAAAAAGTAAGCAACAA  <  NC_012417/1975‑1835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.