| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 4433 | 10 (2.380) | 27 (0.020) | 9/260 | 0.0 | 2.2% | intergenic (+398/‑67) | USA300HOU_pUSA300HOUMR0006/cadR | hypothetical protein/cadmium binding protein |
| ? | NC_012417 | = 1931 | 2433 (0.860) | intergenic (+164/+162) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 109 total aligned reads displayed.
ATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTTATAATACATTCAAAAATATTTTTGAATGAGGTGTATTATGATTCAAACGGTTGTTGCTGCTGCTGTTCTTTATATTGCTACAGCAGTTGATTTATTAGTAATTTTATTAAT > CP000731/4293‑4573 | aTTTATTGATGTTGAGAAGAACCCTTAACTAGACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA < 1:481192‑M1/141‑1 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA > 2:980776‑M1/1‑141 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA > 1:890303‑M1/1‑141 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA < 3:194626‑M1/141‑1 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA < 1:895654‑M1/141‑1 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA > 1:963334‑M1/1‑141 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA < 1:981291‑M1/141‑1 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA > 3:180953‑M1/1‑141 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA < 2:998536‑M1/141‑1 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA > 1:214301‑M1/1‑141 (MQ=255)aTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGGTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA < 3:314301‑M1/141‑1 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGTTTTGGGATTGTTAAGGGTTCCGATGCGCAACGTCAATAAAGCACTTGGAATAAAt > 3:320479‑M1/1‑140 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt > 1:836177‑M1/1‑140 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt > 1:750293‑M1/1‑140 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt > 1:571525‑M1/1‑140 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt < 2:710496‑M1/141‑2 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt > 1:210673‑M1/1‑140 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt < 1:946983‑M1/141‑2 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt > 2:444830‑M1/1‑140 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt > 1:378629‑M1/1‑140 (MQ=255) tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAt > 2:591765‑M1/1‑140 (MQ=255) TTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAataaaat < 2:50640‑M1/141‑3 (MQ=255) tATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAtcg > 2:103073‑M1/1‑138 (MQ=255) aTGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAtgcgtcgt < 2:570258‑M1/141‑9 (MQ=255) gaagaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATACAtgcgtcgtctatttt > 4:395900‑M1/1‑126 (MQ=255) gaagaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA > 2:883894‑M1/1‑126 (MQ=255) gaagaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAA < 1:883894‑M1/126‑1 (MQ=255) agaaCCCTTAACTCAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAtgcgtcgtctatttttt > 2:948175‑M1/1‑124 (MQ=255) cccTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAtgcgtcgtctattttttatta > 1:196034‑M1/1‑120 (MQ=255) cTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGt > 1:192175/1‑141 (MQ=255) aCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATAAAAGTTATAATACATTc > 4:107886/1‑141 (MQ=255) cATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTTATAATACATTCAAAAATAtttt > 4:206727/1‑141 (MQ=255) cGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTta > 3:421156/1‑92 (MQ=255) cGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTta > 3:421162/1‑92 (MQ=255) cGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTta < 4:421162/92‑1 (MQ=255) cGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTta < 4:421156/92‑1 (MQ=255) ttttGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTTATAATACATTCAAAAATATTTTTGAATGGGGTGTATTATGATTCAAACGGTTGTtgc < 4:43905/141‑1 (MQ=255) aGGCTCAACGTCAATAAAGCAATTGGAATAAAtgcgtcgtctattttttattatcttcatgataatcatattttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaatagga < 1:21856‑M1/141‑110 (MQ=255) tCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTTATAATACATTCAAAAATATTTTTGAATGAGGTGTATTATGATTCAAACGGTTGTTGCTGCTGCTGTTCTTTATATTGCTAcagc < 1:832116/141‑1 (MQ=255) cGTCAATAAAGCAATTGGAATAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaa > 2:239511‑M1/1‑24 (MQ=255) cAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTTATAATACATTCAAAAATATTTTTGAATGAGGTGTATTATGATTCAAACGGTTGTTGCTGCTGCTGTTCTTTATATTGCTACAGCAGTTGATTTATTAGt < 3:206727/141‑1 (MQ=255) tcactgaataaAtgcgttgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaac < 2:558171‑M1/136‑130 (MQ=255) aaTTGGAATAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaac < 2:958793‑M1/141‑130 (MQ=255) aaTTGGAATAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaac < 1:739893‑M1/141‑130 (MQ=255) aaTTGGAATAAAtgcggcgtctattttttattattttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaac < 1:839207‑M1/141‑130 (MQ=255) tccgcagaaatgcctcgtgtattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaa < 2:809842‑M1/134‑132 (MQ=255) gtcatgaatgcgtcttctattttttattatcttcatgataatcagattgtgcttccatcgcgtcaaaagcatcagctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaaga < 1:307401‑M1/135‑134 (MQ=255) acctaaatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaa < 3:44628‑M1/138‑135 (MQ=255) tttaaAtgcgtcgtatattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtaaaaacaagaag > 2:584196‑M1/3‑6 (MQ=255) gatAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaa > 1:977300‑M1/2‑6 (MQ=255) aaTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcttcaaaagcatcatctttataaaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaag < 4:355329‑M1/141‑136 (MQ=255) aaTAAAtgcgtcgtctattttttattatcttcatgataatcatattttacttccatctcgtcaaaagcatcatctttaaaaaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaag < 2:951898‑M1/141‑136 (MQ=255) aaTAAAtgcgtcgtctattatttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcaacttaatagaaaaacaaaaagtaagcaacaacacaaaaaaaaaaaaaaaaacagtgtgaaaacaagaag < 2:672577‑M1/141‑136 (MQ=255) atcaatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga < 2:152695‑M1/138‑137 (MQ=255) aTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga > 1:779473‑M1/1‑5 (MQ=255) aTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga < 1:399901‑M1/141‑137 (MQ=255) aTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga < 2:101965‑M1/141‑137 (MQ=255) aTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga < 1:320600‑M1/141‑137 (MQ=255) aTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga > 4:156118‑M1/1‑5 (MQ=255) aTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga < 2:698568‑M1/141‑137 (MQ=255) aTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga < 1:560474‑M1/141‑137 (MQ=255) aTAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaaaaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga < 2:910876‑M1/141‑137 (MQ=255) aTAAAtgcgtcgtctattttttattatctgcatgataagcatacttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaaaaccaataggaataaaaaaacagtgtgaaaacaagaaga < 4:416248‑M1/141‑137 (MQ=255) aTAAAtgcgtcgtctattttttagtatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatgtttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaaga < 2:402658‑M1/141‑137 (MQ=255) tAAAtgcgtcgtctattttttattatcttcatgataatcatatttttttttttttttttcaaaagcatcatctttatagaaaaacaaacagtaatcaacaacaccaataggaataaaaaaacagtttgaaaacaagaagaa > 2:1016941‑M1/1‑4 (MQ=255) tAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaa < 1:139618‑M1/141‑138 (MQ=255) tAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaa < 1:556246‑M1/141‑138 (MQ=255) tAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaa < 1:139550‑M1/141‑138 (MQ=255) tAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaa < 1:707207‑M1/141‑138 (MQ=255) tAAAtgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaa < 2:534678‑M1/141‑138 (MQ=255) tAAAtgcgtcgtctattttttattatcttcatgataaacatagttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaa > 1:886320‑M1/1‑4 (MQ=255) aaaatgcgtagtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttaaagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaa < 4:33740‑M1/140‑138 (MQ=255) aaaatgagtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaaaaaaaataaaaaaacagtgtgaaaacaagaagaa < 4:435104‑M1/140‑138 (MQ=255) aaatgcgtcgtctattttttattatcttcattataatcatatttttcttccatctcgtcaaaatcagcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaa < 3:355496‑M1/141‑139 (MQ=255) aaatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatcttgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaa < 2:36530‑M1/141‑139 (MQ=255) aaatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaa < 1:232118‑M1/141‑139 (MQ=255) aaatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaa > 4:12529‑M1/1‑3 (MQ=255) aatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacacctataggaataaaaaaacagtgtgaaaacaagaagaaac < 1:744976‑M1/141‑140 (MQ=255) aatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaac > 2:416300‑M1/1‑2 (MQ=255) aatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaac > 1:67947‑M1/1‑2 (MQ=255) aatgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaac > 1:395240‑M1/1‑2 (MQ=255) aatgcgtcgtctattttttattatcttcatgataatcatatttttcctccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaac < 3:439269‑M1/141‑140 (MQ=255) aatgcgtcgtctattttttatgatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaac < 3:339180‑M1/141‑140 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaagaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact < 1:393322‑M1/141‑141 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaatatgaataaaaaaacagtgtgaaaacaagaagaaact > 4:260111‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact > 1:247663‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact < 1:332606‑M1/141‑141 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact < 2:672572‑M1/141‑141 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact < 4:317619‑M1/141‑141 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact > 1:415200‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact > 4:165693‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact > 1:482949‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact > 2:874595‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact < 1:779810‑M1/141‑141 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact > 1:846564‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact > 2:230784‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact > 2:294861‑M1/1‑1 (MQ=255) atgcgtcgtctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaata < 1:538669‑M1/106‑106 (MQ=255) atgcggcgtcttttttttgttatgttcatgataattttgtttttctaaaatctcgtccaatgcatcatcttaatagaaaaacaaacagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact < 4:179861‑M1/141‑141 (MQ=255) atgagtcttctattttttattatcttcatgataatcatatttttcttccatctcgtcaaaagcatcatctttatagaaaaacaaaaagtaagcaacaacaccaataggaataaaaaaacagtgtgaaaacaagaagaaact < 2:108688‑M1/141‑141 (MQ=255) | ATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAAGCACCTATGATTATTTAAAAATATAAGTTATAATACATTCAAAAATATTTTTGAATGAGGTGTATTATGATTCAAACGGTTGTTGCTGCTGCTGTTCTTTATATTGCTACAGCAGTTGATTTATTAGTAATTTTATTAAT > CP000731/4293‑4573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |