New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 443310 (2.380)27 (0.020) 9/260 0.0 2.2% intergenic (+398/‑67) USA300HOU_pUSA300HOUMR0006/cadR hypothetical protein/cadmium binding protein
?NC_012417 = 1931 2433 (0.860)intergenic (+164/+162) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2923 total aligned reads displayed.

GAGTTTCTTCTTGTTTTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAA  >  NC_012417/1791‑2071
                                                                                                                                            |                                                                                                                                              
      cttcttGTTTTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATg                                                                                                                                          <  1:965532/141‑1 (MQ=255)
         cttGTTTTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCg                                                                                                                                       >  3:367199/1‑141 (MQ=255)
          ttGTTTTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCga                                                                                                                                      <  3:268912/141‑1 (MQ=255)
           tGTTTTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCgag                                                                                                                                     >  1:714739/1‑141 (MQ=255)
              tttCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGaaa                                                                                                                                  >  4:357311/1‑141 (MQ=255)
               ttCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGaaaa                                                                                                                                 <  2:65065/141‑1 (MQ=255)
                tCACACTGTTTTTTTTTTTTTTTTTTTGTTGTTGCTTACTTTTTGTTTTTTTTTTATGTTGATTCTTTTGACGAGATGGATGAAAAATATGTTTATCTTTAAGATAATAAAAATTTTTCTACTCTTTTATTACGAGAAAAt                                                                                                                                >  4:385180/1‑141 (MQ=255)
                  acacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAATATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATTCCGATAAAAttt                                                                                                                              <  3:301294‑M2/141‑4 (MQ=255)
                   cacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttta                                                                                                                             >  2:215858‑M2/1‑137 (MQ=255)
                   cacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTCTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttta                                                                                                                             >  4:427721‑M2/1‑137 (MQ=255)
                     cTGTTTTTTTATTTCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttatt                                                                                                                           <  2:117143‑M2/141‑7 (MQ=255)
                     cTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttatt                                                                                                                           <  3:340005‑M2/141‑7 (MQ=255)
                       gTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttattga                                                                                                                         <  1:901650‑M2/141‑9 (MQ=255)
                       gTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttattga                                                                                                                         <  1:649191‑M2/141‑9 (MQ=255)
                            tttATTCTTATTGGTGTTGTTACTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTg                                                                                                                    <  2:101845/141‑1 (MQ=255)
                             ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                   <  3:173994/141‑1 (MQ=255)
                             ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                   >  4:124111/1‑141 (MQ=255)
                             ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                   <  1:467143/141‑1 (MQ=255)
                              tATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                  <  1:1029343/141‑1 (MQ=255)
                               aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGCCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                 >  2:755304/1‑141 (MQ=255)
                               aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                 <  1:304326/141‑1 (MQ=255)
                                 tcgtATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGGTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGTTGACGCATTTATGCCTAGAAAATTTATTGATGTTGagaag                                                                                                               <  4:23689/138‑1 (MQ=255)
                                 tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                               <  1:73573/141‑1 (MQ=255)
                                 tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                               <  1:853413/141‑1 (MQ=255)
                                 tCCTATTGGTGTTGTTGCTTACTTTTCGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                               <  2:814299/141‑1 (MQ=255)
                                  ccTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaaga                                                                                                              <  3:319580/141‑1 (MQ=255)
                                   cTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAgaagaa                                                                                                             >  3:445412/1‑141 (MQ=255)
                                    tATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAc                                                                                                            >  1:408941/1‑141 (MQ=255)
                                      ttGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAAccc                                                                                                          <  3:143720/141‑1 (MQ=255)
                                          tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAA‑AAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                     <  1:599606/141‑1 (MQ=255)
                                           gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                     <  1:162893/141‑1 (MQ=255)
                                            ttgttgCTTACTTTTTTTTTTTTTTTTAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑t                                                                                                  >  2:57478/1‑141 (MQ=255)
                                            ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑t                                                                                                  <  2:77729/141‑1 (MQ=255)
                                            ttgctgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑t                                                                                                  <  1:994282/141‑1 (MQ=255)
                                              gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑Taa                                                                                                >  1:350073‑M2/1‑139 (MQ=255)
                                                    tACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGc                                                                                          >  1:1000312/1‑141 (MQ=255)
                                                      cTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAg                                                                                        <  1:573285/141‑1 (MQ=255)
                                                       tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGa                                                                                       >  1:800608/1‑141 (MQ=255)
                                                       tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGa                                                                                       <  2:239592/141‑1 (MQ=255)
                                                        ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGAc                                                                                      <  2:730511/141‑1 (MQ=255)
                                                        tcttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGaa                                                                                      >  4:19326/3‑140 (MQ=255)
                                                          ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGa                                                                                    >  1:522767/1‑141 (MQ=255)
                                                           tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGaa                                                                                   <  2:702259/141‑1 (MQ=255)
                                                           tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGaa                                                                                   >  3:74070/1‑141 (MQ=255)
                                                           tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGaa                                                                                   <  1:543868/141‑1 (MQ=255)
                                                            gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCg                                                                                                                                       >  2:525071/1‑90 (MQ=255)
                                                             tttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCCGAcattcg                                                                                 <  2:263034/141‑6 (MQ=255)
                                                              ttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCgag                                                                                                                                     >  2:411931/1‑90 (MQ=255)
                                                              ttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGt                                                                                <  1:697266/141‑1 (MQ=255)
                                                              ttttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGt                                                                                <  2:595359/141‑1 (MQ=255)
                                                                ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCg                                                                              <  3:419520/141‑1 (MQ=255)
                                                                ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCg                                                                              <  1:676609/141‑1 (MQ=255)
                                                                      aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCgag                                                                                                                                     <  3:125455/82‑1 (MQ=255)
                                                                      aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAg                                                                        >  1:32801/1‑141 (MQ=255)
                                                                       aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGc                                                                       >  1:221953/1‑141 (MQ=255)
                                                                        aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCg                                                                      <  2:437091/141‑1 (MQ=255)
                                                                        aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCg                                                                      >  2:296512/1‑141 (MQ=255)
                                                                          atgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTg                                                                    <  2:673650/141‑1 (MQ=255)
                                                                           tgatgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGctcac                                                                   <  1:835887/141‑5 (MQ=255)
                                                                              tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                               >  4:51534/1‑96 (MQ=255)
                                                                              tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑Taa                                                                                                >  3:96943‑M2/1‑107 (MQ=255)
                                                                               gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑Taaacttgtcgaatggtcggcttaatagctcacgct                                                               <  4:171817‑M2/141‑36 (MQ=255)
                                                                                  tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                     >  2:382309/1‑102 (MQ=255)
                                                                                  tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                     <  1:382309/102‑1 (MQ=255)
                                                                                     gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                         >  1:772218/1‑141 (MQ=255)
                                                                                      aCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAATTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                                        >  2:460192/1‑141 (MQ=255)
                                                                                        gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑AAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                                      <  4:331123/141‑1 (MQ=255)
                                                                                          gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                      >  2:553721/1‑93 (MQ=255)
                                                                                          gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑Taaa                                                                                               <  1:491220‑M2/98‑4 (MQ=255)
                                                                                           aTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCa                                                   >  1:252350/1‑141 (MQ=255)
                                                                                            tGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAt                                                  >  2:493891/1‑141 (MQ=255)
                                                                                              gaagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTc                                                <  3:206171/141‑1 (MQ=255)
                                                                                                agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                              <  4:214096/141‑1 (MQ=255)
                                                                                                agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                              <  2:323341/141‑1 (MQ=255)
                                                                                                   aaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACaa                                           >  1:277537/1‑141 (MQ=255)
                                                                                                    aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAg                                          >  1:876996/1‑141 (MQ=255)
                                                                                                       tatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACAATcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgc                                         >  2:352549‑M2/1‑84 (MQ=255)
                                                                                                        atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                      >  4:75473/1‑141 (MQ=255)
                                                                                                        atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATCGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                    >  2:861236/1‑127 (MQ=255)
                                                                                                         tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTg                                     >  2:622499/1‑141 (MQ=255)
                                                                                                          gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTgg                                    >  2:187858/1‑141 (MQ=255)
                                                                                                            ttATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                 <  1:444228/64‑1 (MQ=255)
                                                                                                             tATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAt                                 >  4:299140/1‑141 (MQ=255)
                                                                                                                  tGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTa                            >  4:146012/1‑141 (MQ=255)
                                                                                                                    aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                          >  2:959203/1‑141 (MQ=255)
                                                                                                                      gctaataaAAAATAGACGACGCAGTTATGGCGAGAAAATTTATTGATGTGGAAAAGAACCCTTAAC‑‑TAAACTAGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATGCGACAAGCTGTGGTATTGCTAAggg                        >  2:151005/3‑141 (MQ=14)
                                                                                                                      gATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                        <  4:408540/141‑1 (MQ=255)
                                                                                                                        taataaAAAATAGACGACGCAtttattccaattgctttattgacgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaaggg                        >  1:196034‑M2/1‑21 (MQ=255)
                                                                                                                          ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGGTTGTTAAGGGTTcc                    >  3:238878/1‑141 (MQ=255)
                                                                                                                          ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                    >  2:93760/1‑141 (MQ=255)
                                                                                                                           taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                   <  3:396743/141‑1 (MQ=255)
                                                                                                                               aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc               <  1:625971/141‑1 (MQ=39)
                                                                                                                                    gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc          >  4:269863/1‑141 (MQ=35)
                                                                                                                                      cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt        >  1:932018/1‑141 (MQ=34)
                                                                                                                                      cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt        >  2:881405/1‑141 (MQ=34)
                                                                                                                                        acgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCa      >  1:134156/1‑141 (MQ=32)
                                                                                                                                        acgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCa      <  2:995160/141‑1 (MQ=32)
                                                                                                                                         cgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa     >  1:116233/1‑141 (MQ=32)
                                                                                                                                          gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt    <  2:834221/141‑1 (MQ=32)
                                                                                                                                          gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt    <  2:908999/141‑1 (MQ=32)
                                                                                                                                            |                                                                                                                                              
GAGTTTCTTCTTGTTTTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAA  >  NC_012417/1791‑2071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.