BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 4419	11 (2.610)	25 (0.020)	16/254	0.0	2.0%	intergenic (+384/‑81)	USA300HOU_pUSA300HOUMR0006/cadR	hypothetical protein/cadmium binding protein
*	?	NC_012417	= 1946	2408 (0.870)	25 (0.020)	16/254	0.0	2.0%	intergenic (+179/+147)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2841 total aligned reads displayed.

TTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA  >  NC_012417/1806‑2082

ttCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGaaaa                                                                                                                                            <  2:841216/141‑1 (MQ=255)

 tcgcacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGGCGCATTTATGCCGAGAAAAt                                                                                                                                           <  1:489798/138‑1 (MQ=255)

  cacaCTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtt                                                                                                                                          <  1:738153‑M2/141‑3 (MQ=255)

    cacTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttta                                                                                                                                        <  1:779796‑M2/141‑5 (MQ=255)

        ttttttttaTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttattga                                                                                                                                    >  1:22117‑M2/2‑133 (MQ=255)

        gTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAtttattga                                                                                                                                    >  1:576651‑M2/1‑133 (MQ=255)

            ttttATTCTTATTGGTGTTGTTGCTTAGTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAACAATATGATTATCAAAAAAAAAAAAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                                <  2:712601/141‑1 (MQ=255)

            ttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                                <  1:304109/141‑1 (MQ=255)

            ttttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGtt                                                                                                                                >  1:384598/1‑141 (MQ=255)

              ttATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTga                                                                                                                              <  1:467143/141‑1 (MQ=255)

                aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                            >  1:836590/1‑141 (MQ=255)

                aTTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCAAAAAGAAAAAAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgaga                                                                                                                            <  2:27890/141‑1 (MQ=255)

                 ttCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAATTATGATTATCTTGAAGATAATAAAAAATAGACAACGCATTTATGCCGAGAAAATTTATTGATGTTGagaa                                                                                                                           >  2:386420/1‑141 (MQ=255)

                  tCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                          <  4:238648/141‑1 (MQ=255)

                   ccTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaaga                                                                                                                         <  3:319580/141‑1 (MQ=255)

                          gtgtTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTa                                                                                                                  <  3:369666/141‑1 (MQ=255)

                            gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                <  1:162893/141‑1 (MQ=255)

                             ttgttgCTTACTTGTTGTTTTTCTATAAAGATGATGCTTTTGACGAAAAAAAAAAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑t                                                                                                             <  4:196509/141‑1 (MQ=38)

                               gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTTACGAGATGGAAGACAAATATGATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGCAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑Taa                                                                                                           <  4:426228‑M2/141‑3 (MQ=255)

                               gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGGCGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑Taa                                                                                                           <  2:627281‑M2/141‑3 (MQ=255)

                                   cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTGAC‑‑Taaactt                                                                                                       >  1:905719‑M2/1‑135 (MQ=255)

                                     tACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGc                                                                                                     >  1:1000312/1‑141 (MQ=255)

                                        tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGa                                                                                                  <  1:628663/141‑1 (MQ=255)

                                           ttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGa                                                                                               >  1:522767/1‑141 (MQ=255)

                                            tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGaa                                                                                              >  4:218683/1‑141 (MQ=255)

                                             gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAAt                                                                                             >  1:350152/1‑141 (MQ=255)

                                             gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAAt                                                                                             <  1:59976/141‑1 (MQ=255)

                                                 ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCg                                                                                         <  2:920594/141‑1 (MQ=255)

                                                  tatataACGATGAGGCTTTTGACGGAATGCAATGAAAATATTTTTATCATGAAAATAAAAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCgg                                                                                        <  4:72362/139‑1 (MQ=18)

                                                  tCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAAttt                                                                                                                                         <  2:557853‑M2/94‑4 (MQ=255)

                                                      taAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATa                                                                                    >  3:246818/1‑141 (MQ=255)

                                                       aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAg                                                                                   <  2:65227/141‑1 (MQ=255)

                                                       aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAg                                                                                   >  1:802913/1‑141 (MQ=255)

                                                        aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCAGAGAAAATTTATTGATGTCGAGCCGAGCCCTTAAA‑‑TAAACTTGCAGACGAATGTCGGCATAgg                                                                                  >  3:196552/1‑140 (MQ=37)

                                                         aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCg                                                                                 >  2:785637/1‑141 (MQ=255)

                                                         aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCg                                                                                 <  4:146600/141‑1 (MQ=255)

                                                              atgCTTTTGACGAGATGGGAGAAAAATATGATTATCATGAAGATAATAAAAAATATACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                            >  2:98369/1‑141 (MQ=255)

                                                              atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACAATcccaaaacttgtcgaatggtcggcttaatag                                                                              <  1:544957‑M2/141‑32 (MQ=255)

                                                              atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                            <  1:655020/141‑1 (MQ=255)

                                                              atgCGTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                            <  2:202610/141‑1 (MQ=255)

                                                               tgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCt                                                                           <  3:397374/141‑1 (MQ=255)

                                                                gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                          <  2:822084/141‑1 (MQ=255)

                                                                 cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                         <  2:1026258/141‑1 (MQ=255)

                                                                 cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                         <  1:414786/141‑1 (MQ=255)

                                                                      gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                    >  2:440777/1‑141 (MQ=255)

                                                                        cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                  <  2:336199/141‑1 (MQ=255)

                                                                         gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                                                 >  2:946983/1‑141 (MQ=255)

                                                                         gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                                                 >  3:16959/1‑141 (MQ=255)

                                                                         gagaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                                                 >  1:674293/1‑141 (MQ=255)

                                                                           gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                                 <  1:1026092/93‑1 (MQ=255)

                                                                           gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                               >  1:444415/1‑141 (MQ=255)

                                                                            aTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTgag                                                                                                                             <  2:496504/80‑1 (MQ=255)

                                                                                aagaaAAATATGATTTTCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCg                                                          <  1:853769/141‑1 (MQ=255)

                                                                                 agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                         <  2:1004046/141‑1 (MQ=255)

                                                                                 agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                         <  1:698568/141‑1 (MQ=255)

                                                                                 agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                         <  1:11225/141‑1 (MQ=255)

                                                                                    aaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACaa                                                      >  1:277537/1‑141 (MQ=255)

                                                                                     aaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAg                                                     >  1:876996/1‑141 (MQ=255)

                                                                                      aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                    <  2:737493/141‑1 (MQ=255)

                                                                                      aaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGt                                                    >  3:78216/1‑141 (MQ=255)

                                                                                       atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                   <  2:605680/141‑1 (MQ=255)

                                                                                         atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                 >  2:67918/1‑141 (MQ=255)

                                                                                         atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                 <  1:936850/141‑1 (MQ=255)

                                                                                           gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTgg                                               <  1:717423/141‑1 (MQ=255)

                                                                                             ttATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                             <  4:380641/141‑1 (MQ=255)

                                                                                              tATCATGAATATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                        >  2:580442/1‑129 (MQ=255)

                                                                                              tATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAt                                            >  4:126015/1‑141 (MQ=255)

                                                                                                    gAAGATAATAAAAAATAGACGTAGTATCTATATCTATAAAATATATAGAGGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTaa                                      <  1:970721/141‑1 (MQ=14)

                                                                                                    gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACAATcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaa                                        >  3:138712‑M2/1‑72 (MQ=255)

                                                                                                       gATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAggg                                   <  2:135104/141‑1 (MQ=255)

                                                                                                         taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGtt                                 >  3:302043/1‑141 (MQ=255)

                                                                                                         taataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGtt                                 >  4:406603/1‑141 (MQ=255)

                                                                                                          aataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                >  2:869513/1‑141 (MQ=255)

                                                                                                           ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                               <  2:25136/141‑1 (MQ=255)

                                                                                                            taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                              >  3:47844/1‑141 (MQ=255)

                                                                                                            taaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                              >  2:525720/1‑141 (MQ=255)

                                                                                                              aaaaaTAGACGACGCATTTATGCCGAGAAAAtttattgacgttgagcctcggaacccttaacaatcccaaaacttgtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttct                              >  2:163584‑M2/1‑31 (MQ=255)

                                                                                                              aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                            <  2:470085/141‑1 (MQ=40)

                                                                                                              aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                            <  2:418160/141‑1 (MQ=40)

                                                                                                              aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                            <  4:17227/141‑1 (MQ=40)

                                                                                                                aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                          >  1:135108/1‑141 (MQ=39)

                                                                                                                aaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGc                          <  2:889951/141‑1 (MQ=39)

                                                                                                                   tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                       >  3:116513/1‑141 (MQ=38)

                                                                                                                     gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACANGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     <  1:333080/141‑1 (MQ=25)

                                                                                                                     gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     >  2:310261/1‑141 (MQ=35)

                                                                                                                     gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     <  4:298252/141‑1 (MQ=35)

                                                                                                                     gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     >  4:269863/1‑141 (MQ=35)

                                                                                                                     gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     >  2:223938/1‑141 (MQ=35)

                                                                                                                     aacgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                     >  3:340901/2‑141 (MQ=25)

                                                                                                                      acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                    <  1:250299/141‑1 (MQ=35)

                                                                                                                       cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                   <  4:100175/141‑1 (MQ=33)

                                                                                                                            cATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAATCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa              <  2:765680/141‑1 (MQ=17)

                                                                                                                            cATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATa              <  4:51213/141‑1 (MQ=32)

                                                                                                                             aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa             <  3:426664/141‑1 (MQ=32)

                                                                                                                               ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg           >  4:3272/1‑141 (MQ=32)

                                                                                                                                 aTGCCGAGAAAATTTATTGATGTTTATAAGAACCCTTAAC‑‑TACACTTGCAGACGCATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa         >  2:363298/1‑141 (MQ=255)

                                                                                                                                 aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa         >  4:351563/1‑141 (MQ=32)

                                                                                                                                   gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                <  1:194468/38‑1 (MQ=255)

                                                                                                                                      gagaAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGATCTTAAGCCCACCATTAGACAAGTCTTGGGATTGTTAAGGGTTCCGCGGCTCAACGTCAATAAAGCAATTgg    >  3:220052/1‑141 (MQ=11)

                                                                                                                                       agaAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGa   >  3:270200/1‑141 (MQ=31)

TTCACACTGTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑TAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAA  >  NC_012417/1806‑2082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.