Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000731	11612	11670	59	2 [1]	[1] 2	USA300HOU_pUSA300HOUMR0014	recombinase

GATCATCAGCCGGTCGAATTGCAGCACGTGCTAGAGGCCGATATGGAGGTAGACCTGAAAAATTAAATAAACAAGATTTAAACTTACTTAAGACACTTTATGATAATGGTACGCCAATTAAAACAATTGCAGAGCAGTGGCAAGTTTCACGTACAACTATTTATCGTTATCTCAATAAATTAG  >  CP000731/11629‑11811                                           |                                                                                                                                             gATCATCAGCCGGTCGAATTGCAGCACGTGCTAGAGGCCGATATGGAGGTAGACCTGAAAAATTAAATAAACAAGATTTAAACTTACTTAAGACACTTTATGATAATGGTACGCCAATTAAAACAATTGCAGAGCAGTGGc                                            <  1:941475/141‑1 (MQ=255)                                           atGGAGGTAGACCTGAAAAATTAAATAAACAAGATTTAAACTTACTTAAGACACTTTATGATAATGGTACGCCAATTAAAACAATTGCAGAGCAGTGGCAAGTTTCACGTACAACTATTTATCGTTATCTCAATAAATTag  >  2:535043/1‑141 (MQ=255)                                           |                                                                                                                                             GATCATCAGCCGGTCGAATTGCAGCACGTGCTAGAGGCCGATATGGAGGTAGACCTGAAAAATTAAATAAACAAGATTTAAACTTACTTAAGACACTTTATGATAATGGTACGCCAATTAAAACAATTGCAGAGCAGTGGCAAGTTTCACGTACAACTATTTATCGTTATCTCAATAAATTAG  >  CP000731/11629‑11811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑