BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2419897	90 (1.190)	5 (0.080)	4/228	NT	5.5%	intergenic (+65/‑172)	USA300HOU_RS12460/ssaA2_3	hypothetical protein/Staphylococcal secretory antigen ssaA2
*	?	USA300TCH1516_ALE	= 2419903	92 (1.390)	5 (0.080)	4/228	NT	5.5%	intergenic (+71/‑166)	USA300HOU_RS12460/ssaA2_3	hypothetical protein/Staphylococcal secretory antigen ssaA2

Only 100 of 130 total aligned reads displayed.

ATTCACAATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAA  >  USA300TCH1516_ALE/2419757‑2420036

aTTCACAATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTTTAACTTTGACTAATTTT                                                                                                                                              >  2:679632‑M1/1‑141 (MQ=255)

  acaaaaTTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTATAACTTTTACTAAtttt‑tt                                                                                                                                           >  2:375775/5‑140 (MQ=255)

   cacaATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTt‑tat                                                                                                                                          >  1:720700/1‑141 (MQ=255)

   cacaATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATAAAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAATTATTTCCTATTAATTAACTATTAAATTCATTATAATTTAGACTAATTTt‑tat                                                                                                                                          >  1:307447/1‑141 (MQ=255)

    acaATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTgtaa                                                                                                                                          >  1:797980‑M1/1‑137 (MQ=255)

    acaATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTgtaa                                                                                                                                          >  1:738320‑M1/1‑137 (MQ=255)

     caATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTACTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTt‑tatta                                                                                                                                        >  2:412098/1‑141 (MQ=255)

       attattGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACa                                                                                                                                      <  1:347091‑M2/141‑2 (MQ=255)

            tGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACaaaatt                                                                                                                                 <  2:71408‑M2/141‑7 (MQ=255)

             gCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGAAACTTTGACTAATTTTgtaataaaaatta                                                                                                                                 >  2:255210‑M1/1‑128 (MQ=255)

             gCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATATGTTAATCTCATTGTAACTTTGACTAATATT‑TATTACaaacata                                                                                                                                <  1:255210‑M2/141‑8 (MQ=255)

                 gtgtCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACaaaattagtca                                                                                                                            >  1:405812‑M2/1‑130 (MQ=255)

                        atatTATAATGGCCAAGAATATATAATACCTTTAACAATTCGCTTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGtttt                                                                                                                     <  2:228460/141‑1 (MQ=255)

                        atagTATAATGGCAAAGAATATATACTACCTTTAACAATTCCATTTATTTAAACATACTACAAATAAATATTTCCTATGAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGtttt                                                                                                                     <  2:53419/141‑1 (MQ=255)

                         aattatAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGttttt                                                                                                                    <  2:619298/140‑1 (MQ=255)

                          attatAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGtttttt                                                                                                                   <  2:274484/141‑1 (MQ=255)

                                     cAAAAATATATAATACTTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTAc                                                                                                        <  2:591786/141‑1 (MQ=255)

                                      aaGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACa                                                                                                       >  1:910052/1‑141 (MQ=255)

                                        gAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACaaa                                                                                                     >  2:499812/1‑141 (MQ=255)

                                        aaaTATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACaaa                                                                                                     <  2:500323/140‑1 (MQ=255)

                                         aaTATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTATTCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAAt                                                                                                    >  2:679250/1‑141 (MQ=255)

                                         aaTATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTCCAGAATTAATCAAAGTTTTTTTATTCTTTTACaatt                                                                                                    >  1:750436/1‑139 (MQ=255)

                                            atataATACCTTTAACGATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCaa                                                                                                 >  1:539175/1‑141 (MQ=255)

                                              ataataCCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTGT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATa                                                                                               >  1:70494/1‑141 (MQ=255)

                                              ataataCCTTTAACAATTCGATTTATTTAAACATATCACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTATTTATTCTTTTACAAATCAATa                                                                                               >  1:631397/1‑141 (MQ=255)

                                               taataCCTTTAACAATTCGATTTATTTAAACATATTACACATCAATATTTCCTATTAATTATCTGTTAATCTCATTGTAAAATATTCTTATTTT‑GAGTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATaa                                                                                              <  1:527531/141‑1 (MQ=255)

                                                 ataCCTTTAACAATTCGATTTATTTAAACATATTACCAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATAAATAACa                                                                                            >  2:834746/1‑141 (MQ=255)

                                                    ccTTTAACAATTCGATTTATTTAAACATGGTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaa                                                                                           <  2:736540‑M2/141‑46 (MQ=255)

                                                    ccTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTtattacaaaattagtcaaagttacaatgagattaacagataattaataggaa                                                                                          >  1:736540‑M1/1‑89 (MQ=255)

                                                    ccTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTc                                                                                         <  1:645826/141‑1 (MQ=255)

                                                      tttAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTccc                                                                                       <  2:753261/141‑1 (MQ=255)

                                                       ttAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTcccc                                                                                      >  1:564841/1‑141 (MQ=255)

                                                          aCAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TCTTATAAAATGATGCAAATTTTTTTTATTCTTTTACAAATCAATAACATTCCCcaca                                                                                   >  2:413652/1‑141 (MQ=255)

                                                             aTTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTATTCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACaaga                                                                                >  2:596995/1‑141 (MQ=255)

                                                                cGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAATTTTGAATAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgt                                                                               >  2:797980‑M2/1‑84 (MQ=255)

                                                                cGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgt                                                                               >  2:738320‑M2/1‑84 (MQ=255)

                                                                  atttatttAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCAt                                                                           >  1:318362/1‑141 (MQ=255)

                                                                  atttatttAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCAt                                                                           >  1:598429/1‑141 (MQ=255)

                                                                   tttatttaAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCAtt                                                                          <  1:686533/141‑1 (MQ=255)

                                                                     tattgaAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTaa                                                                        <  1:231608/141‑1 (MQ=255)

                                                                     taattaAACATATTACAAACAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTaa                                                                        <  1:252062/138‑1 (MQ=255)

                                                                       tttaAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAAtt                                                                      <  2:464775/141‑1 (MQ=255)

                                                                        ttaACCATATCACTAATTATTATTGCCTATTAATTTTCTATTAATCTCATTTTAACTTTTACTTATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACACTCCTCACAAGAAGCATTAAttt                                                                     <  2:473940/141‑1 (MQ=255)

                                                                           aaCATATTACAAATAAATATTTCCTATTAAGTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGt                                                                  <  1:375775/141‑1 (MQ=255)

                                                                                atTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAg                                                             >  2:346419/1‑141 (MQ=255)

                                                                                  tACAAATAAATATTTCCTATTCATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTa                                                           >  1:828698/1‑141 (MQ=255)

                                                                                   aCAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTtattacaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcg                                                           >  2:738320‑M1/1‑58 (MQ=255)

                                                                                   aCAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTaa                                                          >  2:229756/1‑141 (MQ=255)

                                                                                   aCAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTCT‑TATTACAGAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTaa                                                          >  1:808551/1‑141 (MQ=255)

                                                                                         aaataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTTTTTTTTTTCAAATCAATAACATTCCCCACAAGAAGCCTTAATTTTTTTAAATTAACAAttt                                                    >  2:112851/1‑140 (MQ=255)

                                                                                         aaataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTg                                                    <  1:296833/141‑1 (MQ=255)

                                                                                          aataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTCGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGt                                                   <  1:615087/141‑1 (MQ=255)

                                                                                            tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                 <  2:563947/141‑1 (MQ=255)

                                                                                            tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                 <  1:106834/141‑1 (MQ=255)

                                                                                            tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                 <  2:97398/141‑1 (MQ=255)

                                                                                            tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAAAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                 >  1:18722/1‑141 (MQ=255)

                                                                                            tatTTCCTATTAATTACCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                 <  2:394483/141‑1 (MQ=255)

                                                                                            tagttCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCGCAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                 <  2:696432/138‑1 (MQ=255)

                                                                                               ttCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaagg                                                >  1:736540‑M2/1‑53 (MQ=255)

                                                                                                tCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCAACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCaa                                             >  1:403125/1‑141 (MQ=255)

                                                                                                   tATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTTTTTTTTTATAAATCAATAACATTCCCCACAATAAGCATTAATTTTGTTGAAGTAACTATGATCATCAAtac                                          >  2:366887/1‑139 (MQ=255)

                                                                                                   tATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAAtta                                          >  2:366886/1‑140 (MQ=255)

                                                                                                    attaattaTCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAATTCAATAACATTCCCCACAAGAGACATTAATTTTGTTAAAGTAACTATTGTCATTAAtttg                                         >  2:266156/1‑139 (MQ=255)

                                                                                                              tGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTggga                               >  1:242530/1‑141 (MQ=255)

                                                                                                              tGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTgaga                               <  1:871643/141‑1 (MQ=255)

                                                                                                                ttAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTAGAAATGTGAGAAt                             >  2:450248/1‑141 (MQ=255)

                                                                                                                  aaTCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATaa                           >  1:356863/1‑141 (MQ=255)

                                                                                                                    tctcATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATacaa                         >  1:413235/1‑141 (MQ=255)

                                                                                                                    tctcATTGTAACTTTGACTAATGTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAAAAGCATTAATTTTGTTAAAGTAACAATAGTCATCAATCCGAGATGTGAGAaaaaaa                         >  1:709210/1‑141 (MQ=255)

                                                                                                                     ctcATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATaaaaa                        >  1:896409/1‑140 (MQ=255)

                                                                                                                      tcATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACa                       >  2:900616/1‑141 (MQ=255)

                                                                                                                       cATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTGTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAg                      >  2:26702/1‑141 (MQ=255)

                                                                                                                         ttGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTc                    <  1:499812/141‑1 (MQ=255)

                                                                                                                         ttGTAACTTTGACTAATTTT‑TATTACAAAATTAGTAAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCCCAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTc                    >  1:826399/1‑141 (MQ=255)

                                                                                                                             aaCTTTGACTAATTTTgtaataaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatattt                 >  2:682217‑M1/1‑16 (MQ=255)

                                                                                                                             aaCTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGGTa                >  1:615125/1‑141 (MQ=255)

                                                                                                                             aaCTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTa                <  1:813181/141‑1 (MQ=255)

                                                                                                                             aaCTTTGACCAATTTTgtaataaaaattagtcaaagttacaatgtgattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatattt                 >  2:485879‑M1/1‑16 (MQ=255)

                                                                                                                              aCTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTAc               >  1:324016/1‑141 (MQ=255)

                                                                                                                              aCTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGACGCTAc               >  2:623915/1‑141 (MQ=255)

                                                                                                                               cTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACg              <  1:690528/141‑1 (MQ=255)

                                                                                                                                tttGACTAATTTT‑TATTACAACATTAGTCAAAGTTTTTTTATTATTTTACAAAGCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGt             <  1:119496/141‑1 (MQ=255)

                                                                                                                                 ttGACTTATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCTAGATGTGAGAATAAAACAGTCGCTACGtt            <  2:536887/141‑1 (MQ=255)

                                                                                                                                 ttGACTAATTTTgtaataaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtagtatgtttaaataaatcgaattgttaaatgtattatatattcttggccattatattatttgaca             >  1:509890‑M1/1‑12 (MQ=255)

                                                                                                                                 ttGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGGGATGTGAGAATAAAACAGTCGCTACGtt            >  2:378998/1‑141 (MQ=255)

                                                                                                                                  tGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACCAATCAATAACATTCCCCACAAGAAACATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGttt           <  1:345638/141‑1 (MQ=255)

                                                                                                                                  tGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAATGTAAGTATTGTCATCCATTCGAGATGTGTGATTAGAACTGTcgtttcgttt           >  1:11970/1‑141 (MQ=255)

                                                                                                                                  tGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTAAAAATCAATAACATTCCCCACAATAAGCATTAATTTTGTTAAATAAACTATTGTCATCAATTCGAGATGTGCGAATAAACCAGTCGCTCCGttt           >  2:363768/1‑141 (MQ=255)

                                                                                                                                   gACTAATTTTGTAATA‑AAAATTAGTCAAACTTTTTTTATTCTTTTAGAAATCAATAACATTCTCCACCAGAAGCATTCATTCTGTTAAAGTAACTCTTGTACGCAATTCGAGATGTGAGAATAAAAAAGTCGCTACGtttt          >  2:424555/1‑141 (MQ=255)

                                                                                                                                   gACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGtttt          <  2:813004/141‑1 (MQ=255)

                                                                                                                                      tatgtttgtaataaatattagtcaaagttacaatgagattaacatataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgc        <  1:255210‑M1/137‑135 (MQ=255)

                                                                                                                                       aaTTTTgtaataaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgca       <  2:71408‑M1/141‑136 (MQ=255)

                                                                                                                                       aaTTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTtttattt      <  1:489252/141‑1 (MQ=255)

                                                                                                                                       aaTTTT‑TATTACAAAAGTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTtttattt      <  1:441355/141‑1 (MQ=255)

                                                                                                                                         tttt‑tATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTttgtttat    >  1:809645/1‑141 (MQ=255)

                                                                                                                                         tttt‑tATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTttatttat    <  1:41762/141‑1 (MQ=255)

                                                                                                                                          ttt‑tATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATGAAACAGTCGCTACGTTTTATTtata   >  1:161058/1‑141 (MQ=255)

                                                                                                                                          ttt‑tATTACAAAATTAGTCAAAGTTTTTTTATTCTTTCACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAAGTCGAGATGTGAGAATAAAACAGTCGCTACGTATTATTtata   >  2:491478/1‑141 (MQ=255)

                                                                                                                                           tt‑tATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATaa  <  2:910052/141‑1 (MQ=255)

                                                                                                                                            tgtaataaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgcaataat  <  1:347091‑M1/141‑141 (MQ=255)

ATTCACAATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAA  >  USA300TCH1516_ALE/2419757‑2420036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.