BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2419897	90 (1.190)	5 (0.080)	4/228	NT	5.5%	intergenic (+65/‑172)	USA300HOU_RS12460/ssaA2_3	hypothetical protein/Staphylococcal secretory antigen ssaA2
*	?	USA300TCH1516_ALE	= 2419903	92 (1.390)	5 (0.080)	4/228	NT	5.5%	intergenic (+71/‑166)	USA300HOU_RS12460/ssaA2_3	hypothetical protein/Staphylococcal secretory antigen ssaA2

Only 100 of 115 total aligned reads displayed.

AATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGA  >  USA300TCH1516_ALE/2419763‑2420043

aaTTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTAc                                                                                                                                               >  2:858927/1‑141 (MQ=255)

 attattGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACa                                                                                                                                              <  1:347091‑M2/141‑2 (MQ=255)

      tGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACaaaatt                                                                                                                                         <  2:71408‑M2/141‑7 (MQ=255)

       gCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATATGTTAATCTCATTGTAACTTTGACTAATATT‑TATTACaaacata                                                                                                                                        <  1:255210‑M2/141‑8 (MQ=255)

           gtgtCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACaaaattagtca                                                                                                                                    >  1:405812‑M2/1‑130 (MQ=255)

            tgtCAAATAATATAATGGCCAAGAATATATAATACATTTAACAATTCGATTTATTTAAACATACTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACaaaattagtcaa                                                                                                                                   >  1:509890‑M2/1‑129 (MQ=255)

                aaaTATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACaaaattagtcaaagtt                                                                                                                               >  2:682217‑M2/1‑125 (MQ=255)

                aaaTATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCACATTGTAACTTTGACTAATTTT‑TATTACaaaattggtcaaagtt                                                                                                                               >  2:485879‑M2/1‑125 (MQ=255)

                  atatTATAATGGCCAAGAATATATAATACCTTTAACAATTCGCTTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑tttt                                                                                                                            <  2:228460/141‑1 (MQ=255)

                  atagTATAATGGCAAAGAATATATACTACCTTTAACAATTCCATTTATTTAAACATACTACAAATAAATATTTCCTATGAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑tttt                                                                                                                            <  2:53419/141‑1 (MQ=255)

                   aattatAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑ttttt                                                                                                                           <  2:619298/140‑1 (MQ=255)

                    attatAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑tttttt                                                                                                                          <  2:274484/141‑1 (MQ=255)

                               cAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTAc                                                                                                               <  1:173585/141‑1 (MQ=255)

                               cAAAAATATATAATACTTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTAc                                                                                                               <  2:591786/141‑1 (MQ=255)

                                aaGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACa                                                                                                              >  1:910052/1‑141 (MQ=255)

                                 aGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTACTTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACaa                                                                                                             >  1:350409/1‑141 (MQ=255)

                                 aGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACaa                                                                                                             >  1:813004/1‑141 (MQ=255)

                                  gAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACaaa                                                                                                            >  2:499812/1‑141 (MQ=255)

                                  aaaTATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACaaa                                                                                                            <  2:500323/140‑1 (MQ=255)

                                   aaTATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTCCAGAATTAATCAAAG‑TTTTTTTATTCTTTTACaatt                                                                                                           >  1:750436/1‑139 (MQ=255)

                                     tatataATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCa                                                                                                         <  1:637486/141‑1 (MQ=255)

                                      atataATACCTTTAACGATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCaa                                                                                                        >  1:539175/1‑141 (MQ=255)

                                        ataataCCTTTAACAATTCGATTTATTTAAACATATCACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTATTTATTCTTTTACAAATCAATa                                                                                                      >  1:631397/1‑141 (MQ=255)

                                         taataCCTTTAACAATTCGATTTATTTAAACATATTACACATCAATATTTCCTATTAATTATCTGTTAATCTCATTGTAAAATATTCTTATTTT‑GAGTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATaa                                                                                                     <  1:527531/141‑1 (MQ=255)

                                           ataCCTTTAACAATTCGATTTATTTAAACATATTACCAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATAAATAACa                                                                                                   >  2:834746/1‑141 (MQ=255)

                                              ccTTTAACAATTCGATTTATTTAAACATGGTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaa                                                                                                   <  2:736540‑M2/141‑46 (MQ=255)

                                              ccTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTc                                                                                                <  1:645826/141‑1 (MQ=255)

                                                tttAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTccc                                                                                              <  2:753261/141‑1 (MQ=255)

                                                 ttAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTcccc                                                                                             >  1:564841/1‑141 (MQ=255)

                                                    aCAATTCGATTTATTTAAACATATTACAAATAAATCTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAACATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCcaca                                                                                          >  2:14061/1‑141 (MQ=255)

                                                    aCAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TCTTATAAAATGATGCAAAT‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCcaca                                                                                          >  2:413652/1‑141 (MQ=255)

                                                    aCAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCcaca                                                                                          <  2:435321/141‑1 (MQ=255)

                                                    aCAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATATCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAAAAACATTcccaaaa                                                                                          >  2:659392/1‑137 (MQ=255)

                                                      aaTTCAATTTATTTAAACATATTACAAATAAATATGTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TCTTTTTATTCTTTTATAATTCAATAACATTACCcactat                                                                                        >  2:395185/1‑138 (MQ=255)

                                                       aTTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTATTCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACaaga                                                                                       >  2:596995/1‑141 (MQ=255)

                                                          cGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgt                                                                                       >  2:738320‑M2/1‑84 (MQ=255)

                                                          cGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTTTTCTTTTACTAATCAATAACATTCTCCACAAGAAGc                                                                                    >  2:306791/1‑141 (MQ=255)

                                                            atttatttAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCAt                                                                                  >  1:318362/1‑141 (MQ=255)

                                                            atttatttAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCAt                                                                                  >  1:598429/1‑141 (MQ=255)

                                                             tttatttaAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCAtt                                                                                 <  1:686533/141‑1 (MQ=255)

                                                               taattaAACATATTACAAACAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTaa                                                                               <  1:252062/138‑1 (MQ=255)

                                                                  ttaACCATATCACTAATTATTATTGCCTATTAATTTTCTATTAATCTCATTTTAACTTTTACTTATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACACTCCTCACAAGAAGCATTAAttt                                                                            <  2:473940/141‑1 (MQ=255)

                                                                     aaCATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGt                                                                         >  1:243221/1‑141 (MQ=255)

                                                                     aaCATATTACAAATAAATATTTCCTATTAAGTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGt                                                                         <  1:375775/141‑1 (MQ=255)

                                                                      aCATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGtt                                                                        <  1:595815/141‑1 (MQ=255)

                                                                          atTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAg                                                                    >  2:346419/1‑141 (MQ=255)

                                                                            tACAAATAAATATTTCCTATTCATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTa                                                                  >  1:828698/1‑141 (MQ=255)

                                                                             aCAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTaa                                                                 >  2:229756/1‑141 (MQ=255)

                                                                                   aaataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTTTTTTTTTTCAAATCAATAACATTCCCCACAAGAAGCCTTAATTTTTTTAAATTAACAAttt                                                           >  2:112851/1‑140 (MQ=255)

                                                                                   aaataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTg                                                           <  1:296833/141‑1 (MQ=255)

                                                                                    aataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTCGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGt                                                          <  1:615087/141‑1 (MQ=255)

                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  2:97398/141‑1 (MQ=255)

                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  1:106834/141‑1 (MQ=255)

                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  2:563947/141‑1 (MQ=255)

                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  1:733118/141‑1 (MQ=255)

                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAAAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        >  1:18722/1‑141 (MQ=255)

                                                                                      tatTTCCTATTAATTACCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  2:394483/141‑1 (MQ=255)

                                                                                      tagttCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCGCAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  2:696432/138‑1 (MQ=255)

                                                                                         ttCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaagg                                                        >  1:736540‑M2/1‑53 (MQ=255)

                                                                                             tATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTTTTTTTTTATAAATCAATAACATTCCCCACAATAAGCATTAATTTTGTTGAAGTAACTATGATCATCAAtac                                                 >  2:366887/1‑139 (MQ=255)

                                                                                             tATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAAtta                                                 >  2:366886/1‑140 (MQ=255)

                                                                                             tATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTc                                                 <  1:691335/141‑1 (MQ=255)

                                                                                                taattaTCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAGTTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCACCAATTCgg                                               >  1:284562/1‑140 (MQ=255)

                                                                                                        tGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTggga                                      >  1:242530/1‑141 (MQ=255)

                                                                                                        tGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTgaga                                      <  1:871643/141‑1 (MQ=255)

                                                                                                          ttAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTAGAAATGTGAGAAt                                    >  2:450248/1‑141 (MQ=255)

                                                                                                            aaTCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATaa                                  >  1:356863/1‑141 (MQ=255)

                                                                                                              tctcATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATacaa                                >  1:413235/1‑141 (MQ=255)

                                                                                                              tctcATTGTAACTTTGACTAATGTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAAAAGCATTAATTTTGTTAAAGTAACAATAGTCATCAATCCGAGATGTGAGAaaaaaa                                >  1:709210/1‑141 (MQ=255)

                                                                                                                tcATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACa                              >  2:900616/1‑141 (MQ=255)

                                                                                                                 cATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTGTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAg                             >  2:26702/1‑141 (MQ=255)

                                                                                                                   ttGTAACTTTGACTAATTTT‑TATTACAAAATTAGTAAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCCCAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTc                           >  1:826399/1‑141 (MQ=255)

                                                                                                                       aaCTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTa                       <  1:813181/141‑1 (MQ=255)

                                                                                                                        aCTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGACGCTAc                      >  2:623915/1‑141 (MQ=255)

                                                                                                                         cTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACg                     <  1:690528/141‑1 (MQ=255)

                                                                                                                          tttGACTAATTTT‑TATTACAACATTAGTCAAAG‑TTTTTTTATTATTTTACAAAGCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGt                    <  1:119496/141‑1 (MQ=255)

                                                                                                                           ttGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGGGATGTGAGAATAAAACAGTCGCTACGtt                   >  2:378998/1‑141 (MQ=255)

                                                                                                                            tGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACCAATCAATAACATTCCCCACAAGAAACATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGttt                  <  1:345638/141‑1 (MQ=255)

                                                                                                                            tGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAATGTAAGTATTGTCATCCATTCGAGATGTGTGATTAGAACTGTcgtttcgttt                  >  1:11970/1‑141 (MQ=255)

                                                                                                                            tGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTAAAAATCAATAACATTCCCCACAATAAGCATTAATTTTGTTAAATAAACTATTGTCATCAATTCGAGATGTGCGAATAAACCAGTCGCTCCGttt                  >  2:363768/1‑141 (MQ=255)

                                                                                                                             gACTAATTTTGTAATA‑AAAATTAGTCAAAC‑TTTTTTTATTCTTTTAGAAATCAATAACATTCTCCACCAGAAGCATTCATTCTGTTAAAGTAACTCTTGTACGCAATTCGAGATGTGAGAATAAAAAAGTCGCTACGtttt                 >  2:424555/1‑141 (MQ=255)

                                                                                                                             gACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGtttt                 <  2:813004/141‑1 (MQ=255)

                                                                                                                              aCTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTttta                >  1:787433/1‑141 (MQ=255)

                                                                                                                              aCTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTttta                >  1:340282/1‑141 (MQ=255)

                                                                                                                                tAATTTT‑TATTACaaaattagtcaaagtttcaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgc               >  2:255210‑M2/1‑13 (MQ=255)

                                                                                                                                 aaTTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTtttattt             <  1:489252/141‑1 (MQ=255)

                                                                                                                                 aaTTTT‑TATTACAAAAGTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTtttattt             <  1:441355/141‑1 (MQ=255)

                                                                                                                                   tttt‑tATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGACTAAAACAGTCGCTACGTTttatttat           <  2:564841/141‑1 (MQ=255)

                                                                                                                                   tttt‑tATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTttgtttat           >  1:809645/1‑141 (MQ=255)

                                                                                                                                   tttt‑tATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTttatttat           <  1:41762/141‑1 (MQ=255)

                                                                                                                                    ttt‑tATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTGCAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGGATAAAACAGTCGCTACGTTTTATTtcta          >  1:845182/1‑141 (MQ=255)

                                                                                                                                    ttt‑tATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATGAAACAGTCGCTACGTTTTATTtata          >  1:161058/1‑141 (MQ=255)

                                                                                                                                    ttt‑tATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGATACGTCTTATTtata          >  1:473902/1‑141 (MQ=255)

                                                                                                                                    ttt‑tATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTCACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAAGTCGAGATGTGAGAATAAAACAGTCGCTACGTATTATTtata          >  2:491478/1‑141 (MQ=255)

                                                                                                                                     tt‑tATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATaa         <  2:910052/141‑1 (MQ=255)

                                                                                                                                          ttaCaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgcaataattgt      >  1:738320‑M2/1‑4 (MQ=255)

                                                                                                                                          ttaCaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgcaataattgt      >  1:797980‑M2/1‑4 (MQ=255)

                                                                                                                                             cAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGa  >  2:763789/1‑141 (MQ=255)

                                                                                                                                             cAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGa  >  1:491733/1‑141 (MQ=255)

                                                                                                                                             cAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGa  >  1:194673/1‑141 (MQ=255)

AATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTT‑TATTACAAAATTAGTCAAAG‑TTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGA  >  USA300TCH1516_ALE/2419763‑2420043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.