| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1217693 | 54 (0.620) | 3 (0.040) | 3/264 | 7.3 | 5.4% | intergenic (+22/‑415) | USA300HOU_RS06060/USA300HOU_RS06065 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1217729 | 56 (0.730) | intergenic (+58/‑379) | USA300HOU_RS06060/USA300HOU_RS06065 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATTCCAATCTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1217531‑1217693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagctatagtgtttGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGTTGTTTTATTTTTTATATGTTT < USA300TCH1516_ALE/1217729‑1217582 GATTCCAATCTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAA > 2:541434/1‑149GATTCCAATCTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATCATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAAAAAATTTAAAAACAAAA > 2:613031/1‑149GATTCCAATCTATCTAGTAGTCACGATGTCCAAGAAAGTGCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAA > 2:661050/1‑149 atgcaAATCTAGCTAGTAGTCACGATGTCGACGAACGTTCAACGAAGCAACAAAATATAAAAAATAACAGAACTATAGATCATAATGATGATTTATTTAAACATGTAAAACATATATTACGTAAACAAGAACAAATTTAAAAACAAAAA > 2:387332/6‑149 ATTCCAATCTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGTTATATTACGTAAACAAGAACAAATTTAAAAACAAAAA > 2:824271/1‑149 AATCTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAAAAAGAACAAATTTAAAAACAAATAAGaca > 2:501546/1‑146 CTAGTAGTCACGATGTTGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTT > 2:160983/1‑149 CTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTAAAAAACAAAAAAGCTATAGTGTT < 2:233544/149‑1 CTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATATAAAAACAAAAAAGCTATAGTGTT > 2:347976/1‑149 AAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTGTAATATTCGGATGCGGTTAAGCAGCCCCTGAAATT > 2:720197/1‑149 ACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTT > 2:284785/1‑149 AAACAAAAAAGCTGTAGTGTTTGTAATAGTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTGTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGT < 1:284785/149‑1 CTATAGTGTTTGTAATGTTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGATTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATGTATCCTTTACATGTTTAAATAAAACATCATTATGATCTATAGTTGTTTTATTTT > 2:686679/1‑149 CTATAGTGTTTGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTTTTTTTTTTTTTGTTCTTGTTTACGTAATATATCCTTTACAGGTTTATATAAATCATCATTATGATCTTTAGTTGTTTTATTTT > 2:745314/1‑149 CTATAGTGTTTGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGTTGTTTTATTTT < 1:741782/149‑1 ggTTGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACTTGTTTAACTGAATCATCATTATGATCTATAGTTGTTTTATTTTTTATATG > 2:35355/3‑149 TTGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGTTGTTTTATTTTTTATATGTT > 1:740773/1‑149 TGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTATATGTTTAAATAAATCATCATTATGATCTAGAGTTGTTTTATTTTTTATATGTTT < 2:335717/149‑1 GATTCCAATCTATCTAGTAGTCACGATGTCGACGAAAGTTCAACGAAGCAAAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1217531‑1217693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagctatagtgtttGTAATATTCGGATGCGGTTAAGCAGCCCCTGATATTAAACACTATAGCTTTTTTGTTTTTAAATTTGTTCTTGTTTACGTAATATATCCTTTACATGTTTAAATAAATCATCATTATGATCTATAGTTGTTTTATTTTTTATATGTTT < USA300TCH1516_ALE/1217729‑1217582 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |