New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1217693	54 (0.620)	3 (0.040)	3/264	7.3	5.4%	intergenic (+22/‑415)	USA300HOU_RS06060/USA300HOU_RS06065	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	= 1217729	56 (0.730)					intergenic (+58/‑379)	USA300HOU_RS06060/USA300HOU_RS06065	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACTTAATTTTAATTG  >  USA300TCH1516_ALE/1217581‑1217876                                                                                                                                                     |                                                                                                                                                    aaaaCATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAACGCTATAGTGTTTAATATCAGGGGCTACATAACCGCCTCCGAATAATAc                                                                                                                                                     >  1:720197/1‑149 (MQ=255)  aaaCATATAAAAAATAAAACAACTCTAGATCATAATGATGATTTATTTAAACATATAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACa                                                                                                                                                    >  2:335717/1‑149 (MQ=255)   aaCATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaa                                                                                                                                                   <  1:740773/149‑1 (MQ=255)     cATATAAAAAATAAAACAACTATAGATCATAATGATGATTCAGTTAAACAAGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACaacc                                                                                                                                                 <  2:35355/149‑3 (MQ=255)     aaaatgaaaaaaaaaaCAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTATAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAac                                                                                                                                                 <  2:35232/143‑1 (MQ=255)            aaaaTAAAACAACTATAGATCATAATGATGTTTTATTTAAACATGTAAAGGATACATTACGTAAACAAGAACAAATTTAAAAACAAAAAATCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAACATTACAAACACTATAg                                                                                                                                          <  2:686679/149‑1 (MQ=255)            aaaaTAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAg                                                                                                                                          >  1:741782/1‑149 (MQ=255)            aaaaTAAAACAACTAAAGATCATAATGATGATTTATATAAACCTGTAAAGGATATATTACGTAAACAAGAACAAAAAAAAAAAAAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAg                                                                                                                                          <  2:745314/149‑1 (MQ=255)                  aaaCAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTtta                                                                                                                                    <  2:203484/149‑1 (MQ=255)                  aaaCAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTtta                                                                                                                                    >  2:735531/1‑149 (MQ=255)                      aacTATAGATGATGAGGATGATTTATTTAAACATGTAATGGATATATTACGGAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTtattat                                                                                                                                <  2:105364/149‑1 (MQ=255)                      aacTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTtattat                                                                                                                                >  1:132546/1‑149 (MQ=255)                      aacTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTtattat                                                                                                                                <  2:55925/149‑1 (MQ=255)                       acTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTACAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGACTATTACAAACACTACAGCttttttgttt                                                                                                                               >  1:284785/1‑143 (MQ=255)                             aaTCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATaaaaa                                                                                                                         <  1:205336/148‑1 (MQ=255)                                  tAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATtta                                                                                                                    >  1:804489/1‑149 (MQ=255)                                      gatgatTTATTTAAACACCCAATTGATATAGTACGTAAACAAGAACAAACTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAg                                                                                                                <  1:250197/149‑1 (MQ=255)                                      gatgatCTATTTAAACATTTAAAGGATATATTACGTAAACATGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAg                                                                                                                <  2:133173/149‑1 (MQ=255)                                          atttatttAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGa                                                                                                            <  1:830173/149‑1 (MQ=255)                                           tttatttaAACATGAAAAGGATATATTACGTAAACAAGAACAAATTAAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGAt                                                                                                           <  1:713572/149‑1 (MQ=255)                                             tatttaAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATaa                                                                                                         <  1:671222/149‑1 (MQ=255)                                                  aaaCATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTAAGGCGATTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAAc                                                                                                    <  1:440944/149‑1 (MQ=255)                                                   aaCATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACt                                                                                                   <  2:805689/149‑1 (MQ=255)                                                       tGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTttat                                                                                               >  2:785425/1‑149 (MQ=255)                                                          aaaGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTaa                                                                                            >  1:831736/1‑149 (MQ=255)                                                             ggATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAAt                                                                                         >  2:460983/1‑149 (MQ=255)                                                              aatatatTACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATc                                                                                        <  2:111681/148‑1 (MQ=255)                                                               atatatTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATcc                                                                                       <  1:728311/149‑1 (MQ=255)                                                               atatatTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATcc                                                                                       <  1:76309/149‑1 (MQ=255)                                                                tatatTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATcca                                                                                      <  1:426500/149‑1 (MQ=255)                                                                  tatTACCTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGTGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATccaac                                                                                    <  1:123967/149‑1 (MQ=255)                                                                    ttACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTGTTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATacaacca                                                                                  >  2:634808/1‑149 (MQ=255)                                                                    ttACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATcaaacca                                                                                  >  2:903650/1‑149 (MQ=255)                                                                     tACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATccaaccaa                                                                                 >  1:652235/1‑149 (MQ=255)                                                                      aCGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAAt                                                                                >  2:874558/1‑149 (MQ=255)                                                                      aCGTAAACAAGAACAAAAAAAAAAAAAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAAt                                                                                <  2:462953/149‑1 (MQ=255)                                                                        gTAAACAACAACAAATATAAAAACAAAAAAACTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTa                                                                              <  2:589741/149‑1 (MQ=255)                                                                            aCAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAAGTAACTTTATTAAAATCCAACCAATTAAGaa                                                                          >  2:583917/1‑149 (MQ=255)                                                                              aaaaaCAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATa                                                                        <  2:804489/146‑1 (MQ=255)                                                                                 aaCAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATGAAAAATTGATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGa                                                                     >  1:687958/1‑149 (MQ=255)                                                                                          aaaaaCAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCACCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGa                                                            <  1:351161/149‑1 (MQ=255)                                                                                             aaCAAAAAATCTCTTGTGTTGAATATCCGCGGCTGCTTAACCGCATCCTAATATTACAAACACTATAGCTTTAATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTa                                                         <  2:855850/149‑1 (MQ=255)                                                                                                         agaGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATca                                             <  1:266631/147‑1 (MQ=255)                                                                                                          taGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATcac                                            <  1:903745/149‑1 (MQ=255)                                                                                                                ttAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATaaccacatt                                      >  1:802618/1‑143 (MQ=255)                                                                                                                ttAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATg                                      >  2:441766/1‑149 (MQ=255)                                                                                                                ttAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATg                                      >  2:442003/1‑149 (MQ=255)                                                                                                                      tCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTCGCGGATAATTAACTTTATTAAACTCCAACCAATCCAGAATACGAGTACTCGGACCAATCCTGGAACCACATAATgcaccac                                >  2:31650/1‑143 (MQ=255)                                                                                                                       cAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATa                               >  1:335035/1‑149 (MQ=255)                                                                                                                       cAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAAAATa                               >  1:863402/1‑149 (MQ=255)                                                                                                                       cAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATACAAACAATTAAGAATACGAGTAATAGGACTAATACTGGAATAACATAATGTacatta                               >  2:460133/1‑144 (MQ=255)                                                                                                                             ctgctTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTcc                         <  2:349102/149‑1 (MQ=255)                                                                                                                               gctTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCcct                       <  1:903736/149‑1 (MQ=255)                                                                                                                                  tAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCcctcct                    <  1:827104/149‑1 (MQ=255)                                                                                                                                    aCCGAATCCGAATATTACAAACACTAAAACATATATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCttt                  <  2:741782/149‑1 (MQ=255)                                                                                                                                        cATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACt              <  2:282682/149‑1 (MQ=255)                                                                                                                                         aTCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATCCCATCAAAAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACtt             <  1:879482/149‑1 (MQ=255)                                                                                                                                         aTCCGAATATTACAAACACTATAGCTATTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCGAACCAATTAAGAATACGAGTAATAGGACTAATACTTGAATCACATAATGTAACATAGCGTGCCTCCTTTAACtt             <  1:684686/149‑1 (MQ=255)                                                                                                                                         aTCCGAAAATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACtt             <  2:156257/149‑1 (MQ=255)                                                                                                                                                tatTACTAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACttaatttta      <  2:27590/149‑1 (MQ=255)                                                                                                                                                tatTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACttaatttta      <  1:294438/149‑1 (MQ=255)                                                                                                                                                tatTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACttaatttta      <  1:799202/149‑1 (MQ=255)                                                                                                                                                aatTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACttaatttta      <  2:747364/148‑1 (MQ=255)                                                                                                                                                   tACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGGAATAGGACTAATACTGGAATCACAAAATGTAACAAAACGTCCCCCCTTTAACgtaatttgaatt   >  2:26132/1‑149 (MQ=255)                                                                                                                                                    aCAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACtaaattttaattt  >  2:57470/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AAAACATATAAAAAATAAAACAACTATAGATCATAATGATGATTTATTTAAACATGTAAAGGATATATTACGTAAACAAGAACAAATTTAAAAACAAAAAAGCTATAGTGTTTAATATCAGGGGCTGCTTAACCGCATCCGAATATTACAAACACTATAGCTTTTATTATATAAAAAATTTATTAGCGGATAATTAACTTTATTAAAATCCAACCAATTAAGAATACGAGTAATAGGACTAATACTGGAATCACATAATGTAACATAACGTCCCTCCTTTAACTTAATTTTAATTG  >  USA300TCH1516_ALE/1217581‑1217876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.