New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1470058	85 (0.980)	4 (0.050)	3/286	7.7	4.4%	intergenic (‑105/‑240)	USA300TCH1516_01369/rnhA	hypothetical protein/14.7 kDa ribonuclease H‑like protein
	?	USA300TCH1516_ALE	= 2031786	93 (1.110)					intergenic (+252/+238)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATTGTAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTACTTATTT  >  USA300TCH1516_ALE/1469910‑1470204                                                                                                                                                     |                                                                                                                                                   ttattGTACGCTGACAGTTCGTCATCTTCGGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                                                                    >  2:544343/1‑149 (MQ=255) ttattGTAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGGATTTGGGTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAGAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                                                                    >  2:232660/1‑149 (MQ=11) ttattGTAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAACGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                                                                    >  2:652992/1‑149 (MQ=38)     tGTAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCCGTCTactc                                                                                                                                                >  2:404813/1‑148 (MQ=255)      gTAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac                                                                                                                                               >  2:621031/1‑149 (MQ=39)      gTAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac                                                                                                                                               >  1:330795/1‑149 (MQ=39)       tAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTCAAACCGCATTTTCGTTCAGTTAactact                                                                                                                                              >  2:793611/1‑149 (MQ=255)       tAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact                                                                                                                                              >  2:288170/1‑149 (MQ=38)        aaGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGACTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                                                                             <  1:442879/149‑1 (MQ=37)        aaGCTGACATTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                                                                             >  2:341179/1‑149 (MQ=255)         aGCTGGCTTTTCGTCATCTTATGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACAAAAATTAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGc                                                                                                                                            <  2:287821/149‑1 (MQ=11)         aGCTGACTTTGCGTCATCTTCTGTGTTGGTACCCACACCCCAACTCGCATTGCGTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGc                                                                                                                                            <  2:448232/149‑1 (MQ=255)          gCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAACGCCTTTTCGTTCTGTCAACTACTGcc                                                                                                                                           >  1:817564/1‑149 (MQ=255)           ccgtcTTTTCGTCATCTTCTTTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCa                                                                                                                                          <  1:610588/145‑1 (MQ=255)           cTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCa                                                                                                                                          <  2:101002/149‑1 (MQ=37)           cTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCa                                                                                                                                          <  1:47367/149‑1 (MQ=38)             gACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                                                                                                        >  2:479104/1‑149 (MQ=39)             gACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                                                                                                        >  1:66945/1‑149 (MQ=39)             gACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCATGACAATAACTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                                                                                                        >  1:875151/1‑149 (MQ=255)                 tttCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATaa                                                                                                                                    <  1:425724/149‑1 (MQ=38)                     gTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATc                                                                                                                                <  2:906707/149‑1 (MQ=39)                         tcttttGTGTTGGGACCCCCCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTag                                                                                                                            <  2:356139/149‑1 (MQ=255)                         tcttctGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGCCTAGAATTGACAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCGATATAACATCGTag                                                                                                                            >  2:247951/1‑149 (MQ=255)                         tcttctGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATACCATCGTag                                                                                                                            >  1:285915/1‑149 (MQ=255)                         tcttctGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCACCTGACTAGAATTGAAAAAAGCTTGTTACATGCGCATTGTCGTTCAGTCAACTACGTCCAGTATAACTTCGTag                                                                                                                            >  2:280420/1‑149 (MQ=11)                              tgtgTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCACTATAACCTCGTAGAGCAt                                                                                                                       >  1:77614/1‑149 (MQ=25)                              tgtgTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCAt                                                                                                                       <  1:816320/149‑1 (MQ=38)                                tgatGGGACCCACACCCCAACGCGCCTTGCCCGTAGAATTTCTTTTCGAAATTTTCCGTGTTGGGGCCCCTGAATAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAg                                                                                                                     <  2:531924/146‑1 (MQ=11)                                     ggACCCACACCCCAACTCGCAGTACGGGTAGAATTTAATTTCGAAATTCTCTGTGTTGGGGCCGCTGAGTAGAATTGAAAAGAGCTTGTTGCAAGCGCATTTTCGTTCAGTGGAGTACTGCCAATATAAAAACGAAGATAATAGAACAt                                                                                                                >  2:615608/1‑149 (MQ=11)                                          ccccccccAACTCGCATTGCCTGTAGAATTTCGTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGAtt                                                                                                           <  2:606556/145‑1 (MQ=25)                                          cacgCCCCCATTCGGATTGCCTTGAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTTGACGCGCTTTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGAtt                                                                                                           <  2:151904/149‑1 (MQ=11)                                          caccgcccAGCTCTCATTTCCTGTAGAACTCCTTTTCGCAATCTTCTGTGTTGGGGCCCCTAACAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGAtt                                                                                                           <  2:876524/144‑1 (MQ=11)                                          cacaCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGAtt                                                                                                           >  2:915393/1‑149 (MQ=35)                                            cacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACGAGCGCTTTTTCGTTCAGTCAACTACTGCCAATGTAACATCGTAGAGCATCGTACTTTGGtttt                                                                                                         >  2:211042/1‑148 (MQ=11)                                            cacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTa                                                                                                         >  2:526004/1‑149 (MQ=34)                                                ccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGCGCATCGAACATTGATTTATGTc                                                                                                     >  2:554183/1‑149 (MQ=21)                                                        cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTg                                                                                             <  2:302019/149‑1 (MQ=32)                                                          ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGaa                                                                                           <  2:927382/149‑1 (MQ=33)                                                          ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGaa                                                                                           <  1:400992/149‑1 (MQ=33)                                                           tGCCTGTAGAATTTCTTTATCAAATTCTCTGTGTCGGCGCCCCAGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACGTCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAg                                                                                          <  1:745939/149‑1 (MQ=11)                                                            gCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAga                                                                                         <  1:553460/149‑1 (MQ=35)                                                             ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAgat                                                                                        <  2:597659/149‑1 (MQ=35)                                                             ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGACTGTTACAATCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAgat                                                                                        >  1:875512/1‑149 (MQ=255)                                                              cTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAgatg                                                                                       >  2:887580/1‑149 (MQ=37)                                                               tGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAgatga                                                                                      >  2:522414/1‑149 (MQ=38)                                                                   gAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTCCTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGAtttt                                                                                  <  1:219868/149‑1 (MQ=255)                                                                    aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGAttttt                                                                                 >  1:612209/1‑149 (MQ=255)                                                                    aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGAttttt                                                                                 >  2:184798/1‑149 (MQ=255)                                                                      tttCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGAttttttt                                                                               <  1:711116/149‑1 (MQ=255)                                                                           tttCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGaa                                                                          >  2:216023/1‑149 (MQ=255)                                                                           tttCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGaa                                                                          >  1:281419/1‑149 (MQ=255)                                                                           tttCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGaa                                                                          >  2:501853/1‑149 (MQ=255)                                                                           tttCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGaa                                                                          <  1:176964/149‑1 (MQ=255)                                                                             tCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTGGGagtt                                                                        <  2:241744/149‑4 (MQ=255)                                                                               gAAATTCTCTGTGTTGGGTCCCCTGACTAGAATTGACCAACCCTTGTAACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACAGCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGtat                                                                      <  1:719803/149‑1 (MQ=17)                                                                               gAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGtat                                                                      <  1:915792/149‑1 (MQ=255)                                                                                aaaGTCTCTGTGTTGGTGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATGTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGtata                                                                     <  2:360652/149‑1 (MQ=255)                                                                                 aaTTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTatat                                                                    >  1:128518/1‑149 (MQ=255)                                                                                 aaTTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTatat                                                                    <  2:368256/149‑1 (MQ=255)                                                                                 aaTTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTatat                                                                    <  1:246250/149‑1 (MQ=255)                                                                                 aaTTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTatat                                                                    <  1:907844/149‑1 (MQ=255)                                                                                     ctttgtgCTGGGGCTCCTGAAAAAAAAAGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTAATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACa                                                                <  2:765181/146‑1 (MQ=17)                                                                                     ctctGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACa                                                                <  1:3037/149‑1 (MQ=255)                                                                                           gtTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGtacta                                                          >  2:863690/1‑149 (MQ=255)                                                                                           gtTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCACATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGCAGATGATTTTTTTAGGAAGAATATTACAGtacta                                                          >  1:86687/1‑149 (MQ=255)                                                                                             tGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACg                                                        <  1:409456/149‑1 (MQ=255)                                                                                             tGGGGCCCCTGACCAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACg                                                        <  1:559550/149‑1 (MQ=255)                                                                                             tGGGGACCCTAACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATCCATTGATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACg                                                        <  1:409206/149‑1 (MQ=18)                                                                                              ggggCCCCTGTCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGt                                                       <  2:278350/149‑1 (MQ=255)                                                                                               gggCCTCTTATTATAATTTAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCTTAGAGCATAGATCATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTa                                                      <  1:625654/149‑1 (MQ=18)                                                                                                 gCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTAtt                                                    <  1:156696/149‑1 (MQ=255)                                                                                                 gCCCCTGACTAGAATTGAAAAAAGCGTGGTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTAtt                                                    <  1:167224/149‑1 (MQ=255)                                                                                                     cttaccaGAATTGTAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGaa                                                <  2:6998/143‑1 (MQ=255)                                                                                                              aTTGAAAAAAGCTTGTTAAAAGCGCATTTTCGATCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTAGAGTACTACGTATTAGAAAatcatcat                                       >  1:683038/1‑147 (MQ=255)                                                                                                                   aaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACGGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTGCTACGTATTAGAAAATCATCTTTGAAt                                  >  2:793173/1‑149 (MQ=255)                                                                                                                        gCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCg                             <  1:351529/149‑1 (MQ=255)                                                                                                                             ttACAAGCGTAGTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACCTTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTAt                        <  2:863277/149‑1 (MQ=255)                                                                                                                               aCAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTAttt                      <  1:915393/149‑1 (MQ=255)                                                                                                                                cAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTAtttt                     >  1:341608/1‑149 (MQ=255)                                                                                                                                   gcgcATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTCATGTCCCAGCCTGACGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTATAAAATCATCTTTGAATCAGCGAGTATTTTaaa                  >  2:540160/1‑149 (MQ=255)                                                                                                                                       aTTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACg              <  1:919731/149‑1 (MQ=255)                                                                                                                                          ttCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTGATGTCCCAGCCTGAAGATGATTTTGTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACgtgt           <  1:135664/149‑1 (MQ=255)                                                                                                                                          tgcGTTCAGTCAACTACTGCCAATATAACATCGTATAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAGATCATCTTTGAATCAGCGAGTATTTTAAACACgtgt           <  2:156549/147‑1 (MQ=255)                                                                                                                                            cGTTCAGTCAACTTCTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTa         <  1:463687/149‑1 (MQ=255)                                                                                                                                            cGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTa         <  1:96758/149‑1 (MQ=255)                                                                                                                                            cGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTa         <  1:680132/149‑1 (MQ=255)                                                                                                                                              tttaGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTACt       <  2:866168/146‑1 (MQ=255)                                                                                                                                                   tCAACTACTGCCAATATAACATCTTAGAGCATAGAACATTGGTTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAAAAAATCATTTTTGAATCAGCGAGTATTTTAAACACGTGTTAATTAttt  >  2:277101/1‑149 (MQ=38)                                                                                                                                                     |                                                                                                                                                   TTATTGTAAGCTGACTTTTCGTCATCTTCTGTGTTGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTTATGTCCCAGCCTGAAGATGATTTTTTTAGGAAGTATATTACAGTACTACGTATTAGAAAATCATCTTTGAATCAGCGAGTATTTTAAACACGTGTTACTTATTT  >  USA300TCH1516_ALE/1469910‑1470204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.