New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1470058	85 (0.980)	4 (0.050)	3/286	7.7	4.4%	intergenic (‑105/‑240)	USA300TCH1516_01369/rnhA	hypothetical protein/14.7 kDa ribonuclease H‑like protein
	?	USA300TCH1516_ALE	= 2031786	93 (1.110)					intergenic (+252/+238)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCAT  >  USA300TCH1516_ALE/2031639‑2031932                                                                                                                                                    |                                                                                                                                                   tCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCCTTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGAGACCCCt                                                                                                                                                   >  1:394956/1‑149 (MQ=255)    tttCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCCATTTCTCTTTGTTGGGGCCCCTGAc                                                                                                                                                >  1:539613/1‑149 (MQ=255)    tttCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGAc                                                                                                                                                >  1:579664/1‑149 (MQ=255)         aaaTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGGCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGaa                                                                                                                                           <  2:314256/149‑1 (MQ=255)            ttCTCTGTGTTGGGGCCCCCCCCCCAACTTCCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTg                                                                                                                                        <  2:261367/149‑1 (MQ=255)            ttCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTg                                                                                                                                        <  1:90393/149‑1 (MQ=255)               tctGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTGGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTGAAATTGaaa                                                                                                                                     >  1:194883/1‑149 (MQ=255)               tctGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGAGGCCCCTGACTAGAATTGaaa                                                                                                                                     >  1:529121/1‑149 (MQ=255)                ctGTGTTGGGGCCCACCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                                                                                    <  2:775281/149‑1 (MQ=255)                ctGTGTTGGGGCCCACACCCCTACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                                                                                    <  1:301515/149‑1 (MQ=255)                ctGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                                                                                    <  1:47799/149‑1 (MQ=255)                     tgggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATCGATAATCCAATTTCTCTTTGTTGGCGCCCCTGACTAAAATAAAAAAAAGCt                                                                                                                               <  2:666431/147‑1 (MQ=18)                     gtGGGGCCCACCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCt                                                                                                                               <  2:176648/148‑1 (MQ=255)                      tGGGGCCCACACCCCAAATTGTATTGTATGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACGCCCCGAATTGCATGCTCTGTGGAAATAGGGCATCCGATTTCTCTTTAATGGGGCCCCTGTATAGAAGTGaaaaatactt                                                                                                                              >  2:520414/1‑144 (MQ=18)                       ggggCCCACACTCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAAATTCTCTTTGTTGGGGACAACAGACCAACTTGCATTGGATGTAGAAATTGGGAATCTAATTTCTTTTTGTTGGGGCCCCTGAAAAAAAAAAAAAAAAGCTTg                                                                                                                             <  2:46462/149‑1 (MQ=18)                         ggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCGCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGtt                                                                                                                           >  1:31573/1‑149 (MQ=255)                         ggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGtt                                                                                                                           >  1:541698/1‑149 (MQ=255)                                         tGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCACCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTCGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                           <  2:448752/149‑1 (MQ=255)                                         tGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                           <  1:542763/149‑1 (MQ=255)                                         tGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                           <  2:575427/149‑1 (MQ=255)                                             ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGTGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                       <  1:443547/149‑1 (MQ=255)                                             ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                       <  2:716878/149‑1 (MQ=255)                                             ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                       <  2:717079/149‑1 (MQ=255)                                                tCTGTAGAAATTGGGTATCCACTTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTTTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACCAGCGCATTTTCGTTCAGTCa                                                                                                    <  1:135834/149‑1 (MQ=255)                                                tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                    >  1:864735/1‑149 (MQ=255)                                                tCTGTAGAAAGTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCCATTTCTCTTGGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                    <  1:444444/149‑1 (MQ=255)                                                 cTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCGTTTTCGTTCAGtaca                                                                                                   >  1:809240/1‑146 (MQ=255)                                                    tAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta                                                                                                >  2:623942/1‑149 (MQ=255)                                                       aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                             <  2:381814/149‑1 (MQ=255)                                                       aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                             >  1:505933/1‑149 (MQ=255)                                                       aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                             <  1:838386/149‑1 (MQ=255)                                                       aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCGGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                             >  1:728361/1‑149 (MQ=255)                                                        aaTTGGGAATCGAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGc                                                                                            <  2:443905/149‑1 (MQ=255)                                                        aaTTGGGAATCCAATTTCTTTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTTTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGc                                                                                            <  1:206035/149‑1 (MQ=255)                                                        aaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGc                                                                                            <  1:525343/149‑1 (MQ=255)                                                         aTTGGGACTCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGcc                                                                                           <  2:86847/149‑1 (MQ=255)                                                         aTTGGGACTCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATGTTCGTTCAGTCAACTACTGcc                                                                                           <  2:865570/149‑1 (MQ=255)                                                          ttGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGTAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCa                                                                                          <  2:4300/149‑1 (MQ=255)                                                          ttGGGAATCCAATTTCTCTTTGGTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCa                                                                                          <  1:414835/149‑1 (MQ=255)                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGCATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCGAata                                                                                       >  2:151835/1‑149 (MQ=255)                                                             ggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAata                                                                                       <  2:779106/149‑1 (MQ=255)                                                                 tCCAATTTCTCTTTGTTGGTGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTGCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc                                                                                   <  1:216656/149‑1 (MQ=255)                                                                    aaTTTCTTCTTGGTGGGGCCCACCCCCAAAGTTGCATTATCGGTAGAAATGTGGAATGCAATTTCTCTTTGTTGGTGCCCTTTACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTc                                                                                <  2:277553/149‑1 (MQ=17)                                                                     aTTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATCACtgct                                                                               >  2:416998/1‑146 (MQ=255)                                                                        tctcTTTGTTGGGGCCCACACCCCAACTTTGATTGTCTGTAGAAATTGGGAATCCAATTGCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTag                                                                            <  2:847491/149‑1 (MQ=255)                                                                          ttcttgctgGGGCCCACCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAACCTCTTTATCCTGTTGCCCCTGACTAGAATTGAAAAAAGCTTGTTCCAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTagag                                                                          <  1:442312/146‑1 (MQ=17)                                                                          tctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTagag                                                                          <  2:898584/149‑1 (MQ=255)                                                                          tctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAACATAACTTCGTagcg                                                                          <  2:450425/149‑3 (MQ=255)                                                                          tcggtgtcgGGGCCCACACCCCAACTCGCATTGTCGGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGGACTAGAATTGTAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTagag                                                                          <  1:66215/145‑1 (MQ=17)                                                                           ctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGc                                                                         >  1:730107/1‑149 (MQ=255)                                                                              ttttgCGGCCCACACCCCAACTTGCATTGTGTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTACTATTGAAAAATGCGTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa                                                                      <  1:404496/147‑1 (MQ=18)                                                                              tgttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa                                                                      <  1:387286/149‑1 (MQ=255)                                                                               gttgGGGCCCACCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAg                                                                     <  1:665645/149‑1 (MQ=255)                                                                               ggtgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATGTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGCGCATAg                                                                     >  2:35029/3‑149 (MQ=255)                                                                                       ccACACACCAACCTGGCTTGTCTCCAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGa                                                             <  2:555276/149‑1 (MQ=17)                                                                                        cacaCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAACGCTAAAAACGTGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt                                                            <  1:875347/149‑1 (MQ=18)                                                                                        cacaCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt                                                            <  2:163409/149‑1 (MQ=255)                                                                                        cacaCCCCAACTTGCATTGGCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt                                                            <  1:239453/149‑1 (MQ=255)                                                                                           acCCCAACTTGCACTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACGGCCAATATAACTTCGTAGAGCATAGAACATTGATTTa                                                         <  1:757410/149‑1 (MQ=255)                                                                                                     gCATTGTCTGTAGACATTGGGAAGCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTCCTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGcc                                               <  2:717211/149‑1 (MQ=255)                                                                                                      cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCct                                              <  1:623942/149‑1 (MQ=255)                                                                                                      cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATGGCAACAAGCTTGTTACAAGCGCATAATCGTTAAGTCAACTACTGCCAATATAACTTCGTAGAGCAGAGAACATTGATGTATGTCTCCGccc                                              >  2:152873/1‑148 (MQ=17)                                                                                                       aTTGTCTGTAGAAACTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGGTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCctc                                             <  1:876637/149‑1 (MQ=255)                                                                                                          gTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCttt                                          <  2:300967/149‑1 (MQ=255)                                                                                                           tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCtttt                                         >  2:725739/1‑149 (MQ=255)                                                                                                           tCTGTAGAAATTGGGAATCCAATTTCTCTTTGCCGCCAACCCTGACTAGAATTCCTAATAGCATGTTACAAGCGCCGTTTCTGTCAGGCAACTACTGCCAATATAACTTCGTGGAGCATAGAACATTGATTTATGTCCCCGCCTCtttt                                         >  2:35906/1‑149 (MQ=17)                                                                                                            cTGGAGACATTGGCAATCCAATTTCTCTTCGTTGTGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCttttt                                        <  1:504160/149‑1 (MQ=17)                                                                                                             tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTa                                       <  1:824733/149‑1 (MQ=255)                                                                                                             tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAACCTTCATCCACTCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTa                                       <  2:330744/149‑1 (MQ=17)                                                                                                              gTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTAt                                      <  1:794403/149‑1 (MQ=255)                                                                                                                 gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGt                                   <  2:810455/149‑1 (MQ=255)                                                                                                                 gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGt                                   <  1:201666/149‑1 (MQ=255)                                                                                                                 gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGt                                   <  1:45907/149‑1 (MQ=255)                                                                                                                  aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCACTGACTCAAATTGAAAAAAGATAGTTAGAATCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGta                                  <  1:213731/149‑1 (MQ=17)                                                                                                                      tGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATTTCCCCGCCTCTTTTTATCGtatata                              >  1:376228/1‑149 (MQ=255)                                                                                                                      tGGGAATCCAATTCCTCTTCGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTCCAAGCGCATTTTCGTTCAGCCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCACCGCCACTCTTTATCGtatata                              >  2:3539/1‑149 (MQ=17)                                                                                                                       gggAATCCAATTTTTCTTTGTTAGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAg                             <  2:404917/149‑1 (MQ=255)                                                                                                                       gggAATCCAATTTCTATTTGTTGGGGGCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTAATGCCACTATAACTGCGTAGAGCATAGAACATTGATTTTTGTCCCCGCCTCTTTTTATCGTATATAg                             <  1:565516/149‑1 (MQ=17)                                                                                                                       ggaaaTCTAAGTTCTCTTTGTTGTGGCCCTTGACAAAAATTGAAACAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAg                             <  2:451186/146‑1 (MQ=17)                                                                                                                         gAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCa                           <  2:442832/149‑1 (MQ=255)                                                                                                                          aaTCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCAt                          >  2:390879/1‑149 (MQ=255)                                                                                                                          aaTCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTAAACTACTGCCAATATAACTTCGTAGAGCATAGAACATGGATTTATGTCCCCGCCTATTTTTACCGTAGATAgact                          >  2:702483/1‑146 (MQ=14)                                                                                                                              cAATTTCTCTTTGTTGGGCCCCCTGACTAGAATTGAAAAACGCCTGTTCAAAGAGCATATTAAATAAGTAAAAAACTGTGAATTTAATTTCGTAGATCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTcc                      <  2:331852/149‑1 (MQ=17)                                                                                                                                  ttCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCttt                  >  1:114869/1‑149 (MQ=255)                                                                                                                                    ctctTTGTTGGGGCCCCTGCATAGCATTGAAACGAGGTTGTCTCTGGCGCATTTTCGTTCAGTCAACTATTTCCAATAGAGCTTCGTATAGCATATAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCttttt                <  2:539613/149‑1 (MQ=18)                                                                                                                                      ctTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTaa              >  2:102849/1‑149 (MQ=255)                                                                                                                                           ttgGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTa         >  2:266086/1‑149 (MQ=255)                                                                                                                                           ttgGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGCCCCCGCCTCTTTTTACCGTATATAGCATGTCCCTTTTTAAAAttt         <  1:735445/149‑2 (MQ=255)                                                                                                                                            tgGGGCCCCTGACTAGAATTGAAAACAGCTTGTTACAAGCGCAGTTTCGTTCAGTCAACTAATGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCCTGTCCCTTTTTAACATTaa        >  2:83155/1‑148 (MQ=17)                                                                                                                                            tgGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACACGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTGACATTaa        >  2:385629/1‑148 (MQ=255)                                                                                                                                              ggtccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACaa      <  2:434344/146‑1 (MQ=255)                                                                                                                                              ggggCCCTGACTAGAATTGAAAAAAGCTTGTTTCTAGCGTATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACaa      <  2:462106/149‑1 (MQ=255)                                                                                                                                              gggCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTGCTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACaa      <  2:778041/149‑1 (MQ=255)                                                                                                                                              gggCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATGGCATGTCCCTTTTTAAAATTACaa      >  2:892353/1‑149 (MQ=255)                                                                                                                                              gggCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAAATACCTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACaa      >  2:148942/1‑149 (MQ=255)                                                                                                                                                 ccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCa   <  1:393207/149‑1 (MQ=255)                                                                                                                                                  tccTGAATAGAAATGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAATTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCAt  <  2:263150/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCAT  >  USA300TCH1516_ALE/2031639‑2031932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.