BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2031791	102 (1.180)	4 (0.050)	3/286	7.7	4.0%	intergenic (+257/+233)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2031829	96 (1.150)	4 (0.050)	3/286	7.7	4.0%	intergenic (+295/+195)	USA300HOU_RS10250/USA300HOU_RS10255	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 103 total aligned reads displayed.

AAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATT  >  USA300TCH1516_ALE/2031647‑2031939

aaaTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGGCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGaa                                                                                                                                                   <  2:314256/149‑1 (MQ=255)

   ttCTCTGTGTTGGGGCCCCCCCCCCAACTTCCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTg                                                                                                                                                <  2:261367/149‑1 (MQ=255)

   ttCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTg                                                                                                                                                <  1:90393/149‑1 (MQ=255)

      tctGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTGGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTGAAATTGaaa                                                                                                                                             >  1:194883/1‑149 (MQ=255)

      tctGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGAGGCCCCTGACTAGAATTGaaa                                                                                                                                             >  1:529121/1‑149 (MQ=255)

       ctGTGTTGGGGCCCACCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                                                                                            <  2:775281/149‑1 (MQ=255)

       ctGTGTTGGGGCCCACACCCCTACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                                                                                            <  1:301515/149‑1 (MQ=255)

       ctGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGaaaa                                                                                                                                            <  1:47799/149‑1 (MQ=255)

            tgggggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATCGATAATCCAATTTCTCTTTGTTGGCGCCCCTGACTAAAATAAAAAAAAGCt                                                                                                                                       <  2:666431/147‑1 (MQ=18)

            gtGGGGCCCACCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCt                                                                                                                                       <  2:176648/148‑1 (MQ=255)

             tGGGGCCCACACCCCAAATTGTATTGTATGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACGCCCCGAATTGCATGCTCTGTGGAAATAGGGCATCCGATTTCTCTTTAATGGGGCCCCTGTATAGAAGTGaaaaatactt                                                                                                                                      >  2:520414/1‑144 (MQ=18)

              ggggCCCACACTCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAAATTCTCTTTGTTGGGGACAACAGACCAACTTGCATTGGATGTAGAAATTGGGAATCTAATTTCTTTTTGTTGGGGCCCCTGAAAAAAAAAAAAAAAAGCTTg                                                                                                                                     <  2:46462/149‑1 (MQ=18)

                ggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCGCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGtt                                                                                                                                   >  1:31573/1‑149 (MQ=255)

                ggCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGtt                                                                                                                                   >  1:541698/1‑149 (MQ=255)

                                tGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCACCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTCGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                   <  2:448752/149‑1 (MQ=255)

                                tGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                   <  1:542763/149‑1 (MQ=255)

                                tGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                   <  2:575427/149‑1 (MQ=255)

                                    ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGTGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                               <  1:443547/149‑1 (MQ=255)

                                    ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                               <  2:716878/149‑1 (MQ=255)

                                    ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                               <  2:717079/149‑1 (MQ=255)

                                       tCTGTAGAAATTGGGTATCCACTTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTTTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACCAGCGCATTTTCGTTCAGTCa                                                                                                            <  1:135834/149‑1 (MQ=255)

                                       tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                            >  1:864735/1‑149 (MQ=255)

                                       tCTGTAGAAAGTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCCATTTCTCTTGGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                            <  1:444444/149‑1 (MQ=255)

                                        cTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCGTTTTCGTTCAGtaca                                                                                                           >  1:809240/1‑146 (MQ=255)

                                           tAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAac‑ta                                                                                                       >  2:623942/1‑149 (MQ=255)

                                              aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTg                                                                                                    >  1:505933/1‑149 (MQ=255)

                                              aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTg                                                                                                    <  1:838386/149‑1 (MQ=255)

                                              aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTg                                                                                                    <  2:381814/149‑1 (MQ=255)

                                              aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCGGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTg                                                                                                    >  1:728361/1‑149 (MQ=255)

                                               aaTTGGGAATCGAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGc                                                                                                   <  2:443905/149‑1 (MQ=255)

                                               aaTTGGGAATCCAATTTCTTTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTTTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGc                                                                                                   <  1:206035/149‑1 (MQ=255)

                                               aaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGc                                                                                                   <  1:525343/149‑1 (MQ=255)

                                                aTTGGGACTCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGcc                                                                                                  <  2:86847/149‑1 (MQ=255)

                                                aTTGGGACTCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATGTTCGTTCAGTCAAC‑TACTGcc                                                                                                  <  2:865570/149‑1 (MQ=255)

                                                 ttGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGTAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCa                                                                                                 <  2:4300/149‑1 (MQ=255)

                                                 ttGGGAATCCAATTTCTCTTTGGTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCa                                                                                                 <  1:414835/149‑1 (MQ=255)

                                                    ggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGCATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCGAata                                                                                              >  2:151835/1‑149 (MQ=255)

                                                    ggAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAata                                                                                              <  2:779106/149‑1 (MQ=255)

                                                        tCCAATTTCTCTTTGTTGGTGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTGCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAAc                                                                                          <  1:216656/149‑1 (MQ=255)

                                                           aaTTTCTTCTTGGTGGGGCCCACCCCCAAAGTTGCATTATCGGTAGAAATGTGGAATGCAATTTCTCTTTGTTGGTGCCCTTTACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTc                                                                                       <  2:277553/149‑1 (MQ=17)

                                                            aTTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATCACtgct                                                                                      >  2:416998/1‑146 (MQ=255)

                                                               tctcTTTGTTGGGGCCCACACCCCAACTTTGATTGTCTGTAGAAATTGGGAATCCAATTGCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTag                                                                                   <  2:847491/149‑1 (MQ=255)

                                                                 ttcttgctgGGGCCCACCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAACCTCTTTATCCTGTTGCCCCTGACTAGAATTGAAAAAAGCTTGTTCCAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTagag                                                                                 <  1:442312/146‑1 (MQ=17)

                                                                 tctTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAACATAACTTCGTagcg                                                                                 <  2:450425/149‑3 (MQ=255)

                                                                 tcggtgtcgGGGCCCACACCCCAACTCGCATTGTCGGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGGACTAGAATTGTAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTagag                                                                                 <  1:66215/145‑1 (MQ=17)

                                                                     ttttgCGGCCCACACCCCAACTTGCATTGTGTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTACTATTGAAAAATGCGTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATa                                                                             <  1:404496/147‑1 (MQ=18)

                                                                     tgttgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATa                                                                             <  1:387286/149‑1 (MQ=255)

                                                                      gttgGGGCCCACCCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAg                                                                            <  1:665645/149‑1 (MQ=255)

                                                                      ggtgGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATGTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGCGCATAg                                                                            >  2:35029/3‑149 (MQ=255)

                                                                              ccACACACCAACCTGGCTTGTCTCCAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGa                                                                    <  2:555276/149‑1 (MQ=17)

                                                                               cacaCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAACGCTAAAAACGTGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt                                                                   <  1:875347/149‑1 (MQ=18)

                                                                               cacaCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt                                                                   <  2:163409/149‑1 (MQ=255)

                                                                               cacaCCCCAACTTGCATTGGCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt                                                                   <  1:239453/149‑1 (MQ=255)

                                                                                  acCCCAACTTGCACTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACGGCCAATATAACTTCGTAGAGCATAGAACATTGATTTa                                                                <  1:757410/149‑1 (MQ=255)

                                                                                            gCATTGTCTGTAGACATTGGGAAGCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TCCTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGcc                                                      <  2:717211/149‑1 (MQ=255)

                                                                                             cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCct                                                     <  1:623942/149‑1 (MQ=255)

                                                                                             cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATGGCAACAAGCTTGTTACAAGCGCATAATCGTTAAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCAGAGAACATTGATGTATGTCTCCGccc                                                     >  2:152873/1‑148 (MQ=17)

                                                                                              aTTGTCTGTAGAAACTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGGTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCctc                                                    <  1:876637/149‑1 (MQ=255)

                                                                                                 gTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCttt                                                 <  2:300967/149‑1 (MQ=255)

                                                                                                  tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCtttt                                                >  2:725739/1‑149 (MQ=255)

                                                                                                  tCTGTAGAAATTGGGAATCCAATTTCTCTTTGCCGCCAACCCTGACTAGAATTCCTAATAGCATGTTACAAGCGCCGTTTCTGTCAGGCAAC‑TACTGCCAATATAACTTCGTGGAGCATAGAACATTGATTTATGTCCCCGCCTCtttt                                                >  2:35906/1‑149 (MQ=17)

                                                                                                   cTGGAGACATTGGCAATCCAATTTCTCTTCGTTGTGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCttttt                                               <  1:504160/149‑1 (MQ=17)

                                                                                                    tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTa                                              <  1:824733/149‑1 (MQ=255)

                                                                                                    tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAACCTTCATCCACTCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTa                                              <  2:330744/149‑1 (MQ=17)

                                                                                                     gTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTAt                                             <  1:794403/149‑1 (MQ=255)

                                                                                                        gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGt                                          <  1:45907/149‑1 (MQ=255)

                                                                                                        gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGt                                          <  2:810455/149‑1 (MQ=255)

                                                                                                        gAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGt                                          <  1:201666/149‑1 (MQ=255)

                                                                                                         aaaTTGGGAATCCAATTTCTCTTTGTTGGGGCCACTGACTCAAATTGAAAAAAGATAGTTAGAATCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGta                                         <  1:213731/149‑1 (MQ=17)

                                                                                                             tGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATTTCCCCGCCTCTTTTTATCGtatata                                     >  1:376228/1‑149 (MQ=255)

                                                                                                             tGGGAATCCAATTCCTCTTCGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTCCAAGCGCATTTTCGTTCAGCCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCACCGCCACTCTTTATCGtatata                                     >  2:3539/1‑149 (MQ=17)

                                                                                                              gggAATCCAATTTTTCTTTGTTAGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAg                                    <  2:404917/149‑1 (MQ=255)

                                                                                                              gggAATCCAATTTCTATTTGTTGGGGGCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TAATGCCACTATAACTGCGTAGAGCATAGAACATTGATTTTTGTCCCCGCCTCTTTTTATCGTATATAg                                    <  1:565516/149‑1 (MQ=17)

                                                                                                              ggaaaTCTAAGTTCTCTTTGTTGTGGCCCTTGACAAAAATTGAAACAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAg                                    <  2:451186/146‑1 (MQ=17)

                                                                                                                gAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCa                                  <  2:442832/149‑1 (MQ=255)

                                                                                                                 aaTCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTAAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATGGATTTATGTCCCCGCCTATTTTTACCGTAGATAgact                                 >  2:702483/1‑146 (MQ=14)

                                                                                                                     cAATTTCTCTTTGTTGGGCCCCCTGACTAGAATTGAAAAACGCCTGTTCAAAGAGCATATTAAATAAGTAAAA‑AACTGTGAATTTAATTTCGTAGATCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTcc                             <  2:331852/149‑1 (MQ=17)

                                                                                                                         ttCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCttt                         >  1:114869/1‑149 (MQ=255)

                                                                                                                           ctctTTGTTGGGGCCCCTGCATAGCATTGAAACGAGGTTGTCTCTGGCGCATTTTCGTTCAGTCAAC‑TATTTCCAATAGAGCTTCGTATAGCATATAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCttttt                       <  2:539613/149‑1 (MQ=18)

                                                                                                                             ctTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTaa                     >  2:102849/1‑149 (MQ=255)

                                                                                                                                  ttgGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTa                >  2:266086/1‑149 (MQ=255)

                                                                                                                                  ttgGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGCCCCCGCCTCTTTTTACCGTATATAGCATGTCCCTTTTTAAAAttt                <  1:735445/149‑2 (MQ=255)

                                                                                                                                   tgGGGCCCCTGACTAGAATTGAAAACAGCTTGTTACAAGCGCAGTTTCGTTCAGTCAAC‑TAATGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCCTGTCCCTTTTTAACATTaa               >  2:83155/1‑148 (MQ=17)

                                                                                                                                   tgGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACACGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTGACATTaa               >  2:385629/1‑148 (MQ=255)

                                                                                                                                     ggtccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACaa             <  2:434344/146‑1 (MQ=255)

                                                                                                                                     ggggCCCTGACTAGAATTGAAAAAAGCTTGTTTCTAGCGTATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACaa             <  2:462106/149‑1 (MQ=255)

                                                                                                                                     gggCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TGCTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACaa             <  2:778041/149‑1 (MQ=255)

                                                                                                                                     gggCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATGGCATGTCCCTTTTTAAAATTACaa             >  2:892353/1‑149 (MQ=255)

                                                                                                                                     gggCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAAAATACCTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACaa             >  2:148942/1‑149 (MQ=255)

                                                                                                                                        ccccTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCa          <  1:393207/149‑1 (MQ=255)

                                                                                                                                         tccTGAATAGAAATGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAT‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCAt         <  2:263150/148‑1 (MQ=255)

                                                                                                                                            tGACTAGAATTGAAAAAATCTGGTTACAGGCGCCTTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATaaa      <  1:233216/149‑1 (MQ=255)

                                                                                                                                            tGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATaaa      <  1:782941/149‑1 (MQ=255)

                                                                                                                                            tGACTAGAAGTTACAAAAGCGTGTTACAGGCGCATTTTCGTTCCGTCAAC‑TCCTGCCAATATAACTTCGTAGAGCATAGAACATTGCTTTCTGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTTAAATTACAAGCATaaa      <  2:307656/149‑1 (MQ=18)

                                                                                                                                             gACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATCGCATGTCCCTTTTTAAAATTACAAGCATAAat     >  2:651156/1‑149 (MQ=255)

                                                                                                                                               cTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAatat   <  2:682772/149‑1 (MQ=255)

                                                                                                                                               cTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAatat   <  1:331873/149‑1 (MQ=255)

                                                                                                                                               cTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAatat   >  1:848587/1‑149 (MQ=255)

                                                                                                                                               cTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTAAG‑CATCTTGTTACCAATCTGATGTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAatat   >  1:445950/1‑149 (MQ=21)

                                                                                                                                                tAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATAtt  <  1:97983/149‑1 (MQ=255)

AAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAC‑TACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTCCCCGCCTCTTTTTATCGTATATAGCATGTCCCTTTTTAAAATTACAAGCATAAATATT  >  USA300TCH1516_ALE/2031647‑2031939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.