New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2314120 =	88 (1.020)	3 (0.040)	3/280	7.6	3.5%	coding (1150/1194 nt)	ndhE	NAD(P)H‑quinone oxidoreductase subunit 4L, chloroplastic
	?	USA300TCH1516_ALE	2314139 =	82 (1.000)					coding (1131/1194 nt)	ndhE	NAD(P)H‑quinone oxidoreductase subunit 4L, chloroplastic
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAAAGATCCTTTTTGCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATA  >  USA300TCH1516_ALE/2313972‑2314265                                                                                                                                                     |                                                                                                                                                   ttAAAGATCCTTTTTGCGAAATAAATGTTTGCTCGGGGTAAAGACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACtt                                                                                                                                                    <  1:144039/149‑1 (MQ=255)  tacaGATCCTTTTTGCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACttt                                                                                                                                                   <  1:347035/146‑1 (MQ=255)  tAAGGATCCTTTGTGCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACttt                                                                                                                                                   <  1:890173/149‑1 (MQ=255)  tAAAGATCCTTTTTGCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACttt                                                                                                                                                   <  1:35133/149‑1 (MQ=255)  tAAAGATCCTTTTTGCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACttt                                                                                                                                                   <  1:834054/149‑1 (MQ=255)  tAAAGATCCTTTTGGCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACttt                                                                                                                                                   <  2:116210/149‑1 (MQ=255)   aaaGATTCTTTTTGCGAAATAAATGTTTTCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTc                                                                                                                                                  <  2:187625/149‑1 (MQ=255)               tGCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATACACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAAt                                                                                                                                      <  2:700764/149‑1 (MQ=255)                gCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATCTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATa                                                                                                                                     <  1:758874/149‑1 (MQ=255)                 cGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAg                                                                                                                                    <  1:276515/149‑1 (MQ=255)                  gAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATCACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGa                                                                                                                                   <  1:148023/149‑1 (MQ=255)                     ataaatGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCACCATTCTATTTATAAAATAGAATa                                                                                                                                >  2:695415/1‑149 (MQ=255)                     ataaatGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATa                                                                                                                                <  1:30554/149‑1 (MQ=255)                     ataaatGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATa                                                                                                                                <  1:841195/149‑1 (MQ=255)                             ttGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTCTTTTGAAAATAGAATACCATTGTa                                                                                                                        >  1:297761/1‑149 (MQ=255)                             ttGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTa                                                                                                                        >  1:791564/1‑149 (MQ=255)                             ttGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTa                                                                                                                        >  1:375792/1‑149 (MQ=255)                                gtCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCATGACAAGCAAACATCACTTTCTTCCCCCTTCAACTTCAACTTTCTATTTGTCAAGTACAATACCATTGTAATg                                                                                                                     <  2:423354/148‑1 (MQ=255)                                cTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATg                                                                                                                     <  1:931269/149‑1 (MQ=255)                                cTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATg                                                                                                                     <  1:342380/149‑1 (MQ=255)                                cTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATg                                                                                                                     <  1:930834/149‑1 (MQ=255)                                cTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATg                                                                                                                     <  2:655592/149‑1 (MQ=255)                                 tCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACCTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGc                                                                                                                    <  1:832310/149‑1 (MQ=255)                                  cGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCa                                                                                                                   <  1:474261/149‑1 (MQ=255)                                    gggTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCata                                                                                                                 <  2:887040/149‑1 (MQ=255)                                    gggTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCata                                                                                                                 <  2:716111/149‑1 (MQ=255)                                     ggTAAATACGTTCTTGAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCatat                                                                                                                <  2:83454/149‑1 (MQ=255)                                     ggTAAATACGGTCTTTAATAATGGAGTTAATTACACGATATTGACTATTTCATTCTGACTGTGCCGATTCAAGTTATACCATGATTACTGTCCTCCTGCTGTGACTTCAACTTTCTAGTTATAAAATAGAATACCATTGTAATGCatat                                                                                                                <  2:81260/149‑1 (MQ=255)                                           tACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACt                                                                                                          >  2:534651/1‑149 (MQ=255)                                             cGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTCCCTTTGCCCATTCAAGATATACCATGAGTACTTTCCTCCAACTTTGACTTCAACTTTCTATTTATAAAATAAAATACCATTGTAATGCATGTAGTACTTa                                                                                                        >  2:356789/1‑149 (MQ=255)                                                tCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTc                                                                                                     >  2:818575/1‑149 (MQ=255)                                                 ttttAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCCACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTcc                                                                                                    <  2:113467/148‑1 (MQ=255)                                                 cTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCATCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCAGTGTAATGCATATAGTACTTATTcc                                                                                                    <  2:411517/149‑1 (MQ=255)                                                       taatGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCattat                                                                                              <  1:81402/149‑1 (MQ=255)                                                       taatGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCattat                                                                                              >  1:273787/1‑149 (MQ=255)                                                       taatGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGGAATGCATATAGTACTTATTCCCattat                                                                                              >  2:536421/1‑149 (MQ=255)                                                          tGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTACTGCATATAGTACTTATTCACATACTTGa                                                                                           >  2:289309/1‑149 (MQ=255)                                                          tGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTTTTGa                                                                                           >  2:909515/1‑149 (MQ=255)                                                          tGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGa                                                                                           >  2:52123/1‑149 (MQ=255)                                                          tGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGa                                                                                           >  2:749944/1‑149 (MQ=255)                                                           ggCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGaa                                                                                          <  1:16771/149‑1 (MQ=255)                                                             cGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGaaaa                                                                                        <  1:545692/149‑1 (MQ=255)                                                             cGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGaaaa                                                                                        >  2:710629/1‑149 (MQ=255)                                                               ttAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATTCATATAGTACTTATTCCCCTTATTGAAAAAg                                                                                      >  1:774421/1‑149 (MQ=255)                                                                tAATTACACGATATTGGATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGt                                                                                     <  1:699444/149‑1 (MQ=255)                                                                       acGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTCTAAAATTAAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACa                                                                              >  1:916181/1‑149 (MQ=255)                                                                         gATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAAt                                                                            >  2:249320/1‑149 (MQ=255)                                                                           tatTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATGCAGTGATTGCTTTCCTTCAGCGTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGc                                                                          <  2:656042/149‑1 (MQ=255)                                                                             ttGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCTCATTATTGAAAAAGTTCTAACAATGCCa                                                                        >  2:891524/1‑149 (MQ=255)                                                                             ttGAATATTTCTATCTGCCTTTGCCCATGCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCa                                                                        >  2:468304/1‑149 (MQ=255)                                                                              tGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCaa                                                                       >  2:55671/1‑149 (MQ=255)                                                                              tGAATATTTCTATCGGCCTTTGCCCATTCAAGAGATACCATGGTTACTTCCCTACAACTTTAACTTCAACTTTCTAGTTATAAAATAGAATACCATTTTAATGCATATAGTCTTTATTCCCATTATTGCAAAAGTACTAACAATgataa                                                                       >  2:28985/1‑145 (MQ=255)                                                                               taaTATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCCACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCaaa                                                                      <  1:423103/148‑1 (MQ=255)                                                                                aaTATTTCTATCTGCCTTTGCCCCTTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAac                                                                     >  1:464708/1‑149 (MQ=255)                                                                                aaTATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCaaaa                                                                     >  2:88595/1‑148 (MQ=255)                                                                                   atTTCTATCTGCCTTTGCCCATTCAAGCTATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTCATAAAATAGAATACCATTCTAATCCATATAGTACTTATTCCCATTAATGAAACAGTTCTAACAATGCCAAAgaca                                                                  >  2:278259/1‑149 (MQ=255)                                                                                   atTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAAcaca                                                                  <  2:608687/149‑1 (MQ=255)                                                                                    tttCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACAt                                                                 >  2:193575/1‑149 (MQ=255)                                                                                            tGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAACTACATCTGcacaa                                                         >  2:150370/1‑148 (MQ=255)                                                                                            tGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACat                                                         >  2:749400/1‑149 (MQ=255)                                                                                              ccTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCAAAACAAATATGCACataa                                                       >  2:790132/1‑148 (MQ=255)                                                                                               cTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACCCATCTCCACAtata                                                      >  2:818086/1‑149 (MQ=255)                                                                                                 ttGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACt                                                    <  2:177370/149‑1 (MQ=255)                                                                                                 ttGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTAAAACAATTAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACt                                                    <  1:215553/149‑1 (MQ=255)                                                                                                   gCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCa                                                  <  2:346335/149‑1 (MQ=255)                                                                                                    cccATACAAGATATACCATAATTACCTTCCTCCAACTATAACTACAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCAt                                                 <  1:184768/149‑1 (MQ=255)                                                                                                     ccAATCAAGATATACCAAGACTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTAAAAAATAGAAAACCATAGTAATGCATATAGTACCTATTCCCATTAATGAAAAAGTTCTAACAAAGCCAAACACATCTGCACATATACTCAtt                                                <  2:49651/149‑1 (MQ=255)                                                                                                      cATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTa                                               >  2:624872/1‑149 (MQ=255)                                                                                                        ttCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAAt                                             <  2:465518/149‑1 (MQ=255)                                                                                                        ttCAAGATATACCATCATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAAt                                             <  2:549079/149‑1 (MQ=255)                                                                                                          cAAGATATATCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATACCAAACACATCTGCACATATACTCATTAATAg                                           <  2:901744/149‑1 (MQ=255)                                                                                                           aaGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑a                                         >  2:706771/1‑149 (MQ=255)                                                                                                           aaGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑a                                         <  2:743727/149‑1 (MQ=255)                                                                                                                 taCCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTccc                                   <  1:142098/149‑1 (MQ=255)                                                                                                                   ccATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCTCATATACTCATTAATAG‑ACTTCCCaa                                 >  2:262496/1‑149 (MQ=255)                                                                                                                   ccATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCaa                                 >  2:333356/1‑149 (MQ=255)                                                                                                                     aTGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACCCATCTGCCCATATACTCATTAATAG‑ACTTCACaaag                               >  2:767621/1‑147 (MQ=255)                                                                                                                           aCTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCa                         >  1:257023/1‑149 (MQ=255)                                                                                                                           aCTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCAATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATct                         >  2:257708/1‑148 (MQ=255)                                                                                                                                cctccAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACct                    <  1:55671/149‑1 (MQ=255)                                                                                                                                cctccAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACct                    <  1:271789/149‑1 (MQ=255)                                                                                                                                        tttAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCcat            <  2:90953/149‑1 (MQ=255)                                                                                                                                        tttAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACACATGCACAAAAACCAAATACCAGCCCTTCCCAAGGGAA‑CATTCATCTATCcat            <  2:781354/149‑1 (MQ=255)                                                                                                                                         ttAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCcatc           <  2:214835/149‑1 (MQ=255)                                                                                                                                             cTTCAACTTTCTATTTATAAAATACAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCataa       >  1:459665/1‑149 (MQ=255)                                                                                                                                                 aaCTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCataataat   >  2:917000/1‑149 (MQ=255)                                                                                                                                                  aCTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCataataata  >  1:116153/1‑149 (MQ=255)                                                                                                                                                  aCTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCataataata  >  1:289084/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTAAAGATCCTTTTTGCGAAATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATA  >  USA300TCH1516_ALE/2313972‑2314265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.