New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2314120 =	88 (1.020)	3 (0.040)	3/280	7.6	3.5%	coding (1150/1194 nt)	ndhE	NAD(P)H‑quinone oxidoreductase subunit 4L, chloroplastic
	?	USA300TCH1516_ALE	2314139 =	82 (1.000)					coding (1131/1194 nt)	ndhE	NAD(P)H‑quinone oxidoreductase subunit 4L, chloroplastic
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATACTCAGTACTTTACCACGTTC  >  USA300TCH1516_ALE/2313992‑2314285                                                                                                                                                    |                                                                                                                                                    ataaatGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCACCATTCTATTTATAAAATAGAATa                                                                                                                                                    >  2:695415/1‑149 (MQ=255) ataaatGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATa                                                                                                                                                    <  1:841195/149‑1 (MQ=255) ataaatGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATa                                                                                                                                                    <  1:30554/149‑1 (MQ=255)         ttGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTCTTTTGAAAATAGAATACCATTGTa                                                                                                                                            >  1:297761/1‑149 (MQ=255)         ttGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTa                                                                                                                                            >  1:791564/1‑149 (MQ=255)         ttGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTa                                                                                                                                            >  1:375792/1‑149 (MQ=255)            gtCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCATGACAAGCAAACATCACTTTCTTCCCCCTTCAACTTCAACTTTCTATTTGTCAAGTACAATACCATTGTAATg                                                                                                                                         <  2:423354/148‑1 (MQ=255)            cTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATg                                                                                                                                         <  1:930834/149‑1 (MQ=255)            cTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATg                                                                                                                                         <  2:655592/149‑1 (MQ=255)            cTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATg                                                                                                                                         <  1:931269/149‑1 (MQ=255)            cTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATg                                                                                                                                         <  1:342380/149‑1 (MQ=255)             tCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACCTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGc                                                                                                                                        <  1:832310/149‑1 (MQ=255)              cGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCa                                                                                                                                       <  1:474261/149‑1 (MQ=255)                gggTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCata                                                                                                                                     <  2:887040/149‑1 (MQ=255)                gggTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCata                                                                                                                                     <  2:716111/149‑1 (MQ=255)                 ggTAAATACGTTCTTGAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCatat                                                                                                                                    <  2:83454/149‑1 (MQ=255)                 ggTAAATACGGTCTTTAATAATGGAGTTAATTACACGATATTGACTATTTCATTCTGACTGTGCCGATTCAAGTTATACCATGATTACTGTCCTCCTGCTGTGACTTCAACTTTCTAGTTATAAAATAGAATACCATTGTAATGCatat                                                                                                                                    <  2:81260/149‑1 (MQ=255)                       tACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACt                                                                                                                              >  2:534651/1‑149 (MQ=255)                         cGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTCCCTTTGCCCATTCAAGATATACCATGAGTACTTTCCTCCAACTTTGACTTCAACTTTCTATTTATAAAATAAAATACCATTGTAATGCATGTAGTACTTa                                                                                                                            >  2:356789/1‑149 (MQ=255)                            tCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTc                                                                                                                         >  2:818575/1‑149 (MQ=255)                             ttttAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCCACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTcc                                                                                                                        <  2:113467/148‑1 (MQ=255)                             cTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCATCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCAGTGTAATGCATATAGTACTTATTcc                                                                                                                        <  2:411517/149‑1 (MQ=255)                                   taatGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCattat                                                                                                                  >  1:273787/1‑149 (MQ=255)                                   taatGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCattat                                                                                                                  <  1:81402/149‑1 (MQ=255)                                   taatGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGGAATGCATATAGTACTTATTCCCattat                                                                                                                  >  2:536421/1‑149 (MQ=255)                                      tGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTACTGCATATAGTACTTATTCACATACTTGa                                                                                                               >  2:289309/1‑149 (MQ=255)                                      tGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTTTTGa                                                                                                               >  2:909515/1‑149 (MQ=255)                                      tGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGa                                                                                                               >  2:52123/1‑149 (MQ=255)                                      tGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGa                                                                                                               >  2:749944/1‑149 (MQ=255)                                       ggCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGaa                                                                                                              <  1:16771/149‑1 (MQ=255)                                         cGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGaaaa                                                                                                            <  1:545692/149‑1 (MQ=255)                                         cGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGaaaa                                                                                                            >  2:710629/1‑149 (MQ=255)                                           ttAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATTCATATAGTACTTATTCCCCTTATTGAAAAAg                                                                                                          >  1:774421/1‑149 (MQ=255)                                            tAATTACACGATATTGGATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGt                                                                                                         <  1:699444/149‑1 (MQ=255)                                                   acGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTCTAAAATTAAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACa                                                                                                  >  1:916181/1‑149 (MQ=255)                                                     gATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAAt                                                                                                >  2:249320/1‑149 (MQ=255)                                                       tatTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATGCAGTGATTGCTTTCCTTCAGCGTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGc                                                                                              <  2:656042/149‑1 (MQ=255)                                                         ttGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCTCATTATTGAAAAAGTTCTAACAATGCCa                                                                                            >  2:891524/1‑149 (MQ=255)                                                         ttGAATATTTCTATCTGCCTTTGCCCATGCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCa                                                                                            >  2:468304/1‑149 (MQ=255)                                                          tGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCaa                                                                                           >  2:55671/1‑149 (MQ=255)                                                          tGAATATTTCTATCGGCCTTTGCCCATTCAAGAGATACCATGGTTACTTCCCTACAACTTTAACTTCAACTTTCTAGTTATAAAATAGAATACCATTTTAATGCATATAGTCTTTATTCCCATTATTGCAAAAGTACTAACAATgataa                                                                                           >  2:28985/1‑145 (MQ=255)                                                           taaTATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCCACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCaaa                                                                                          <  1:423103/148‑1 (MQ=255)                                                            aaTATTTCTATCTGCCTTTGCCCCTTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAac                                                                                         >  1:464708/1‑149 (MQ=255)                                                            aaTATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCaaaa                                                                                         >  2:88595/1‑148 (MQ=255)                                                               atTTCTATCTGCCTTTGCCCATTCAAGCTATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTCATAAAATAGAATACCATTCTAATCCATATAGTACTTATTCCCATTAATGAAACAGTTCTAACAATGCCAAAgaca                                                                                      >  2:278259/1‑149 (MQ=255)                                                               atTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAAcaca                                                                                      <  2:608687/149‑1 (MQ=255)                                                                tttCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACAt                                                                                     >  2:193575/1‑149 (MQ=255)                                                                        tGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAACTACATCTGcacaa                                                                             >  2:150370/1‑148 (MQ=255)                                                                        tGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACat                                                                             >  2:749400/1‑149 (MQ=255)                                                                          ccTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCAAAACAAATATGCACataa                                                                           >  2:790132/1‑148 (MQ=255)                                                                           cTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACCCATCTCCACAtata                                                                          >  2:818086/1‑149 (MQ=255)                                                                             ttGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACt                                                                        <  2:177370/149‑1 (MQ=255)                                                                             ttGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTAAAACAATTAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACt                                                                        <  1:215553/149‑1 (MQ=255)                                                                               gCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCa                                                                      <  2:346335/149‑1 (MQ=255)                                                                                cccATACAAGATATACCATAATTACCTTCCTCCAACTATAACTACAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCAt                                                                     <  1:184768/149‑1 (MQ=255)                                                                                 ccAATCAAGATATACCAAGACTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTAAAAAATAGAAAACCATAGTAATGCATATAGTACCTATTCCCATTAATGAAAAAGTTCTAACAAAGCCAAACACATCTGCACATATACTCAtt                                                                    <  2:49651/149‑1 (MQ=255)                                                                                  cATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTa                                                                   >  2:624872/1‑149 (MQ=255)                                                                                    ttCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAAt                                                                 <  2:465518/149‑1 (MQ=255)                                                                                    ttCAAGATATACCATCATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAAt                                                                 <  2:549079/149‑1 (MQ=255)                                                                                      cAAGATATATCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATACCAAACACATCTGCACATATACTCATTAATAg                                                               <  2:901744/149‑1 (MQ=255)                                                                                       aaGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑a                                                             >  2:706771/1‑149 (MQ=255)                                                                                       aaGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑a                                                             <  2:743727/149‑1 (MQ=255)                                                                                             taCCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTccc                                                       <  1:142098/149‑1 (MQ=255)                                                                                               ccATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCTCATATACTCATTAATAG‑ACTTCCCaa                                                     >  2:262496/1‑149 (MQ=255)                                                                                               ccATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCaa                                                     >  2:333356/1‑149 (MQ=255)                                                                                                 aTGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACCCATCTGCCCATATACTCATTAATAG‑ACTTCACaaag                                                   >  2:767621/1‑147 (MQ=255)                                                                                                       aCTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCa                                             >  1:257023/1‑149 (MQ=255)                                                                                                       aCTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCAATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATct                                             >  2:257708/1‑148 (MQ=255)                                                                                                            cctccAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACct                                        <  1:271789/149‑1 (MQ=255)                                                                                                            cctccAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACct                                        <  1:55671/149‑1 (MQ=255)                                                                                                                    tttAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCcat                                <  2:90953/149‑1 (MQ=255)                                                                                                                    tttAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACACATGCACAAAAACCAAATACCAGCCCTTCCCAAGGGAA‑CATTCATCTATCcat                                <  2:781354/149‑1 (MQ=255)                                                                                                                     ttAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCcatc                               <  2:214835/149‑1 (MQ=255)                                                                                                                         cTTCAACTTTCTATTTATAAAATACAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCataa                           >  1:459665/1‑149 (MQ=255)                                                                                                                             aaCTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCataataat                       >  2:917000/1‑149 (MQ=255)                                                                                                                              aCTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCataataata                      >  1:289084/1‑149 (MQ=255)                                                                                                                              aCTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCataataata                      >  1:116153/1‑149 (MQ=255)                                                                                                                                   cTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTCTCCATCCTAATAATACTCAg                 >  2:541116/1‑149 (MQ=255)                                                                                                                                    tATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATACTCAGt                <  2:137427/149‑1 (MQ=255)                                                                                                                                     aTTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCTATGGAATCATACCTCTATCCATCATAATAATACTCAGTa               <  2:252558/149‑1 (MQ=255)                                                                                                                                     aTTTATAAAATAGAATACCATTGCAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATACTCAGTa               >  1:828097/1‑149 (MQ=255)                                                                                                                                           aaaaTAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTCTCCATCATAATAATACCCAGTACTTTAc         >  1:76550/1‑149 (MQ=255)                                                                                                                                             aaTAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATACTCAGTACTTTAccc       >  1:451460/1‑148 (MQ=255)                                                                                                                                              aTAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATACTCAGTACTTTACCAc      >  1:841418/1‑149 (MQ=255)                                                                                                                                              aTAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATACTCAGTACTTTACCAc      >  2:909394/1‑149 (MQ=255)                                                                                                                                                aGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTACACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCTTCATAATAATACTCAGTACTTTACCACGt    <  1:927394/149‑1 (MQ=255)                                                                                                                                                  aaTACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTCCACAATGTATTCATACCTCTATCCATCATAATAATACTCAGTACTTTACCACGTTc  <  1:640536/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATAAATGTTTGCTCGGGGTAAATACGTTCTTTAATAATGGCGTTAATTACACGATATTGAATATTTCTATCTGCCTTTGCCCATTCAAGATATACCATGATTACTTTCCTCCAACTTTAACTTCAACTTTCTATTTATAAAATAGAATACCATTGTAATGCATATAGTACTTATTCCCATTATTGAAAAAGTTCTAACAATGCCAAACACATCTGCACATATACTCATTAATAG‑ACTTCCCAATGGAATCATACCTCTATCCATCATAATAATACTCAGTACTTTACCACGTTC  >  USA300TCH1516_ALE/2313992‑2314285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.