| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 7672 | 95 (0.830) | 4 (0.040) | 4/238 | NT | 4.4% | intergenic (+282/+244) | USA300HOU_pUSA300HOUMR0010/blaZ | MarR family transcriptional regulator/beta‑lactamase |
| ? | CP000731 | = 7688 | 85 (0.810) | intergenic (+298/+228) | USA300HOU_pUSA300HOUMR0010/blaZ | MarR family transcriptional regulator/beta‑lactamase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTAGCCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/7524‑7672‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagcaacgTATCTTATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATTGTTCGATTAGGGTAAACCTAAATAATACATAAATT < CP000731/7688‑7554 TTAGCCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAA > 2:128272/1‑141TTAGCCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAA > 2:11760/1‑141 AGCCTCTATAATAAACATATTGTAATATAAGTGAGGGATTATTTAGGCTTACCCCCCTCGAACAATACACAATCCTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGACAAAc > 1:335726/1‑140 GCCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGACAAcac > 2:88140/1‑138 GCCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAG > 2:128889/1‑141 GCCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAG > 2:356306/1‑141 CCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGACAAAAtc > 1:63844/1‑139 CCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGC < 1:269174/141‑1 CTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCGTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCA > 2:264796/1‑141 TATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGTATCTTATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATT < 1:22641/141‑1 TATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATT < 2:22641/141‑1 AGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGTATCTTATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATTGTTC < 1:107333/141‑1 AGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATTGTTC < 2:107333/141‑1 AAAAAGCAACGTATCTTATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATTGTTCGATTAGGGTAAACTTAAATAATACAT > 2:83644/1‑141 AAAGCAACGTATCTTATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATTGTTCGATTAGGGTAAACCTAAATAATACATAA > 1:164606/1‑141 AAGCAACGTATCTTATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATTGTTCGATTAGGGTAAACCTAAATAATACATAAA < 1:180576/141‑1 GCAACGTATCTTATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATTGTTCGATTAGGGTAAACCTAAATAATACATAAATT < 2:31915/141‑1 TTAGCCTCTATAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000731/7524‑7672‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagcaacgTATCTTATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCATATATCAAGCAAAGTGACAATAGCATTTTACAAGTATTTTTTATTGTTCGATTAGGGTAAACCTAAATAATACATAAATT < CP000731/7688‑7554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |