New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 767295 (0.830)4 (0.040) 4/238 NT 4.4% intergenic (+282/+244) USA300HOU_pUSA300HOUMR0010/blaZ MarR family transcriptional regulator/beta‑lactamase
?CP000731 = 7688 85 (0.810)intergenic (+298/+228) USA300HOU_pUSA300HOUMR0010/blaZ MarR family transcriptional regulator/beta‑lactamase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 118 total aligned reads displayed.

TAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGAAAATAAT  >  CP000731/7534‑7810
                                                                                                                                          |                                                                                                                                          
taataaACATATTGTAATATAATTTATGTACTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATGTGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCa                                                                                                                                          <  1:244960/141‑1 (MQ=255)
  ataaACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCATCGCACt                                                                                                                                        <  2:197492/141‑1 (MQ=255)
   tagaCATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACtt                                                                                                                                       <  1:151046/138‑1 (MQ=255)
   aaatcATATTTTAATACAATTTTGTTATTATTTCATGTTAGTAAAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACtt                                                                                                                                       <  1:276071/137‑1 (MQ=255)
     aaCATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTa                                                                                                                                     >  1:253332/1‑141 (MQ=255)
       cATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTaaa                                                                                                                                   >  2:315322/1‑141 (MQ=255)
        atatTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAAt                                                                                                                                  >  2:160683/1‑141 (MQ=255)
        atatTGTAATATAATTTATGCATTATTTAGGTTTACCCTAATCGAACAATAAAAAATAATTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAAGCTTATAAATAAGAAAAAAGCAACGCACTTTAAAt                                                                                                                                  >  1:217283/1‑141 (MQ=255)
         tatTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATa                                                                                                                                 >  1:154973/1‑141 (MQ=255)
         tatTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGAACTTTAAATa                                                                                                                                 >  1:69432/1‑141 (MQ=255)
            tGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTGATTCGTATTAATGAGAAAAAAGCAACGCACTTTAAATAAGa                                                                                                                              <  1:301400/141‑1 (MQ=255)
             gTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGAt                                                                                                                             >  2:276656/1‑141 (MQ=255)
             gTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGAt                                                                                                                             >  2:338401/1‑141 (MQ=255)
                    aaTTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATAcgttgc                                                                                                                      <  2:31915‑M2/141‑7 (MQ=255)
                      tttATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATAcgttgctt                                                                                                                    <  1:180576‑M2/141‑9 (MQ=255)
                       ttATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATAcgttgcttt                                                                                                                   >  1:164606‑M2/1‑132 (MQ=255)
                         aTGTATTATTTAAGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATAcgttgcttttt                                                                                                                 >  2:83644‑M2/1‑130 (MQ=255)
                              ttattTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCCCTTTAAATAAGATACGTTGCTTTTTAGAtt                                                                                                            >  1:50778/1‑141 (MQ=255)
                              ttattTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGAtt                                                                                                            <  2:38115/141‑1 (MQ=255)
                              ttattTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGAtt                                                                                                            >  2:341170/1‑141 (MQ=255)
                              ttattTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGAtt                                                                                                            >  1:140711/1‑141 (MQ=255)
                              ttattTAGGTTTACCATAATCGAACCATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGAtt                                                                                                            >  1:179968/1‑141 (MQ=255)
                               tattTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtg                                                                                                           <  1:83102/141‑1 (MQ=255)
                               tattTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtg                                                                                                           >  2:206711/1‑141 (MQ=255)
                                  ttAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATtgatg                                                                                                        >  1:352592/1‑141 (MQ=255)
                                    aGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATAAGTTGCTTTTTCGATTGATGaa                                                                                                      >  2:349239/1‑141 (MQ=255)
                                    aGGTTTACCCTAATCGAAAAATAAAAAATACTTGGAAAATGCTGTTATTCCGTTGCTGGATATATGAGTGGTATTGAACCTGATAGATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGaa                                                                                                      <  1:80927/141‑1 (MQ=255)
                                     ggattACCCTAATCGAACAAGAAAAAATACTTGTAAAATGCTATTTTCACTTTGCTTGATATATGAGAATTATTTAACAAAAAAAAAAAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAac                                                                                                     <  2:130047/138‑1 (MQ=255)
                                     ggTTTACCCTGATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAac                                                                                                     >  1:259744/1‑141 (MQ=255)
                                     ggTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAac                                                                                                     >  2:39073/1‑141 (MQ=255)
                                      gTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAaca                                                                                                    >  1:191834/1‑141 (MQ=255)
                                       tttACCCTAGGCGAACAATAAAAACTACTTGTACAAAAGGAGGGGCAATTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAactc                                                                                                   >  1:262276/1‑139 (MQ=255)
                                         tACCCTAATCGAACAATAAAAAATACTTTTAAAACGCTCTTGCCACCTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCt                                                                                                 <  1:27872/141‑1 (MQ=255)
                                         tACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCt                                                                                                 <  2:78724/141‑1 (MQ=255)
                                          aCCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAACTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATAAACACCta                                                                                                >  2:212672/1‑141 (MQ=255)
                                           cccTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCtat                                                                                               >  1:153390/1‑141 (MQ=255)
                                             cTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATaa                                                                                             >  2:72263/1‑141 (MQ=255)
                                              tAATCGAACAATGAAAAATACTTGTAAAATGCTCTTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCTATTGATGAACACCTATAAt                                                                                            <  2:200765/141‑1 (MQ=255)
                                               aaTCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAAtt                                                                                           >  2:153158/1‑141 (MQ=255)
                                                  cGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTaaa                                                                                        <  2:59577/141‑1 (MQ=255)
                                                   gAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGTATCTTATTTAAAGTGcgttgcttttttctcatttataaggttaaataattct                                                                                       <  2:107333‑M2/141‑38 (MQ=255)
                                                   gAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATAcgttgcttttttctcatttataaggttaaataattct                                                                                       <  1:107333‑M2/141‑38 (MQ=255)
                                                     aCAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACtt                                                                                     >  1:15787/1‑140 (MQ=255)
                                                      cAAAAAAAAATACTTGTAAAATGCTGTTGTAACTTTGATTGAAAGATGAAAATGATTTCACATTATAAATAAACAAAAAGCAACGCACTTTAAATAAAGTACGACACACATTCGATCGCAAAACACCTAAAAGTAAACTaa                                                                                    >  2:244345/1‑140 (MQ=255)
                                                       aaTAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATAcgttgcttttttctcatttataaggttaaataattctcata                                                                                   <  1:22641‑M2/141‑42 (MQ=255)
                                                           aaaaaTACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATc                                                                               <  2:46083/141‑1 (MQ=255)
                                                             aaaTACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCta                                                                             <  2:106673/141‑1 (MQ=255)
                                                              aaTACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATACTTAAAATATTACTCtat                                                                            >  1:33923/1‑141 (MQ=255)
                                                              aaTACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCtat                                                                            >  1:118790/1‑141 (MQ=255)
                                                              aaTACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCtat                                                                            <  1:338401/141‑1 (MQ=255)
                                                                   ttGTAAAATGCTATTGTCTCTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTAttattt                                                                       <  2:317/141‑1 (MQ=255)
                                                                   ttGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAACTGAGAAAAAAGCCACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTAttattt                                                                       >  1:353196/1‑141 (MQ=255)
                                                                      tAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATg                                                                    <  1:356306/141‑1 (MQ=255)
                                                                       aaaaTGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGa                                                                   <  2:253332/141‑1 (MQ=255)
                                                                           tGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAtttt                                                               <  1:31915/141‑1 (MQ=255)
                                                                            gCTATTGTCACTTTGCTTGATATATGAGACTTATTTAACCTTATAACTGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGACGAACACCTATAATTAAACTATTCATCTATTATTTATGAttttt                                                              >  2:13920/1‑141 (MQ=255)
                                                                            gCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAttttt                                                              >  1:170722/1‑141 (MQ=255)
                                                                             cTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGATGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAtttttt                                                             >  2:306273/1‑141 (MQ=255)
                                                                               aTTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTACTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGt                                                           >  1:44075/1‑141 (MQ=255)
                                                                                 tGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtat                                                         >  1:61098/1‑141 (MQ=255)
                                                                                 tGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtat                                                         <  2:113757/141‑1 (MQ=255)
                                                                                   tCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtatat                                                       <  2:306790/141‑1 (MQ=255)
                                                                                    cACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGtatata                                                      >  2:247432/1‑141 (MQ=255)
                                                                                      cTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACAACTATAATTAAACTATTAATCTATTATTTATGTTTCTTTGtacgtaaa                                                    >  2:324224/1‑135 (MQ=255)
                                                                                       tttGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACaa                                                   <  1:214027/141‑1 (MQ=255)
                                                                                        ttGCTTGATATATGAGAATTAGTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAATTATTCATCTATTATTTATGATTTTTTGTATATACAat                                                  <  2:80473/141‑1 (MQ=255)
                                                                                         tGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAata                                                 <  1:341170/141‑1 (MQ=255)
                                                                                           cTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGAGTTTTTGTATATACAATAtt                                               >  2:250250/1‑141 (MQ=255)
                                                                                            ttGATATTTGATAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATAttt                                              <  2:88507/141‑1 (MQ=255)
                                                                                            ttGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATAttt                                              >  1:272093/1‑141 (MQ=255)
                                                                                                tatatGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATAAAATATTTCTat                                          >  2:232616/1‑140 (MQ=255)
                                                                                                  tatGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGcactttaaataagatacgttgcttttttctcatttataaggttaaataattctcatatatcaagcaaagtgacaatagcattttacaagtattttttatt                                        <  2:22641‑M1/141‑101 (MQ=255)
                                                                                                     gagaATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGt                                     >  1:135113/1‑141 (MQ=255)
                                                                                                     gagaATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGt                                     >  1:162147/1‑141 (MQ=255)
                                                                                                      agaATTATTTAACCTTATAAATGAGAAAAAAGCAACGtatcttatttaaagtgcgttgcttttttctcatttataaggttaaataattctcatatatcaagcaaagtgacaatagcattttacaagtattttttattgttc                                    <  1:107333‑M1/141‑105 (MQ=255)
                                                                                                      agaATTATTTAACCTTATAAATGAGAAAAAAGCAACGcactttaaataagatacgttgcttttttctcatttataaggttaaataattctcatatatcaagcaaagtgacaatagcattttacaagtattttttattgttc                                    <  2:107333‑M1/141‑105 (MQ=255)
                                                                                                      agaATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGtt                                    <  1:205009/141‑1 (MQ=255)
                                                                                                       gaATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTa                                   <  2:344998/141‑1 (MQ=255)
                                                                                                       gaATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTa                                   <  1:156960/141‑1 (MQ=255)
                                                                                                        aaTTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTACTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTaa                                  >  2:109462/1‑141 (MQ=255)
                                                                                                             tttAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAgaga                             >  2:313298/1‑141 (MQ=255)
                                                                                                             tttAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAgaga                             >  1:293875/1‑141 (MQ=255)
                                                                                                              ttAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTTTAATTTATGTTTGTTTGTATATACAGAAGTGCTAGTTATTTAAAgagat                            >  1:205265/1‑140 (MQ=255)
                                                                                                              ttAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGaa                            >  2:59829/1‑141 (MQ=255)
                                                                                                                      ataAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGaaa                    <  2:160184/141‑1 (MQ=255)
                                                                                                                        aaaTGAGAAAAAACCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAaaat                  <  2:334716/141‑1 (MQ=255)
                                                                                                                          aTGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAaaataa                <  2:80237/141‑1 (MQ=255)
                                                                                                                           tGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAaaataaa               >  2:108041/1‑141 (MQ=255)
                                                                                                                              gaAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAAtct            <  2:338372/141‑1 (MQ=255)
                                                                                                                               aaaaaaGCAACGCACTTTAAATAAGATACGTTGCTTTTTGGATTGATGAACACATATATTTAACCTATTAATCTATTATTTATGTTTTTTGGTATATACAATTTTTAAAGTTGGTTAAAGAGAA‑TAAGGaaataaaagttc          >  1:296008/1‑136 (MQ=255)
                                                                                                                                aaaaaGCAACGtatcttatttaaagtgcgttgcttttttctcatttataaggttaaataattctcatatatcaagcaaagtgacaatagcattttacaagtattttttattgttcgattagggtaaacttaaataatacat          >  2:83644‑M1/1‑11 (MQ=255)
                                                                                                                                 aaaaGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAATACCTATAATTAAGCTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATATCGa         >  2:75403/1‑141 (MQ=255)
                                                                                                                                  aaaGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGaa        <  1:7955/141‑1 (MQ=255)
                                                                                                                                  aaaGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGaa        <  1:108041/141‑1 (MQ=255)
                                                                                                                                  aaaGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGaa        <  1:72263/141‑1 (MQ=255)
                                                                                                                                  aaaGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGaa        <  2:170722/141‑1 (MQ=255)
                                                                                                                                   aaGCAACGtatcttatttaaagtgcgttgcttttttctcatttataaggttaaataattctcatatatcaagcaaagtgacaatagcattttacaagtattttttattgttcgattagggtaaacctaaataatacataaa       <  1:180576‑M1/141‑134 (MQ=255)
                                                                                                                                   aaGCAACGCACTTTAAATATGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGaaa       <  2:63844/141‑1 (MQ=255)
                                                                                                                                   aaGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGaaa       <  1:322520/141‑1 (MQ=255)
                                                                                                                                     gCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGAAaat     >  1:186061/1‑141 (MQ=255)
                                                                                                                                          |                                                                                                                                          
TAATAAACATATTGTAATATAATTTATGTATTATTTAGGTTTACCCTAATCGAACAATAAAAAATACTTGTAAAATGCTATTGTCACTTTGCTTGATATATGAGAATTATTTAACCTTATAAATGAGAAAAAAGCAACGCACTTTAAATAAGATACGTTGCTTTTTCGATTGATGAACACCTATAATTAAACTATTCATCTATTATTTATGATTTTTTGTATATACAATATTTCTAGTTTGTTAAAGAGAATTAAGAAAATAAATCTCGAAAATAAT  >  CP000731/7534‑7810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.