BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 848580	114 (0.940)	5 (0.050) +CTGAAAAAAAAAAA	3/252	8.9	3.6%	intergenic (+585/‑295)	trxB/USA300HOU_RS04145	Thioredoxin reductase/Nucleotide‑binding protein
*	?	USA300TCH1516_ALE	2665075 =	182 (1.500)	5 (0.050) +CTGAAAAAAAAAAA	3/252	8.9	3.6%	intergenic (+310/+128)	pitA_2/USA300TCH1516_02535	L‑methionine sulfoximine/L‑methionine sulfone acetyltransferase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 115 total aligned reads displayed.

TTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCC  >  USA300TCH1516_ALE/848442‑848715

ttCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCcac                                                                                                                                       <  1:1177384/141‑1 (MQ=255)

 tCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGGGcccgcc                                                                                                                                      >  2:1089644/1‑138 (MQ=255)

 tCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCcaaa                                                                                                                                      >  2:134548/1‑139 (MQ=255)

  cGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTT‑GGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCTAAATTCTCTGTGTTGGGGCCCACAcc                                                                                                                                    <  2:849921/141‑1 (MQ=255)

   ctCATCTTCTGTGTTGGGCCACCCCCAACCTCTATTGTCTGACGAAATTACCAATCCCTTTTCTCTATTTTGAGACCCACACTCTACCTCGTTTTGCCTGTAGAATTTCTTTTCGAAATTCTCGGTGTTGGGTCCCACAcc                                                                                                                                    <  2:269197/140‑1 (MQ=9)

      aGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCa                                                                                                                                 >  2:532833/1‑141 (MQ=255)

            tgtgTTGGGGCCCCGCCAACTTGCATTGTCTGTGGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGc                                                                                                                           >  1:1318847/1‑141 (MQ=255)

            tgtgTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATACAATCACTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGc                                                                                                                           >  1:1220550/1‑141 (MQ=255)

             gtgtTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAAc                                                                                                                               >  2:520960/1‑136 (MQ=255)

             gtgtTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAAc                                                                                                                               <  1:520960/136‑1 (MQ=255)

                ttGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTg                                                                                                                       <  1:1298403/141‑1 (MQ=255)

                  ggggCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGCCCGCTTCTTCGAAATTCTCTGTGTTGTGGCCCACACCCCAACTCGCATTGcc                                                                                                                     >  1:989813/1‑141 (MQ=18)

                  ggggCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGcc                                                                                                                     >  1:1195219/1‑141 (MQ=255)

                  ggggCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGcc                                                                                                                     >  2:1216051/1‑141 (MQ=255)

                  ggggCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACAACCCAACTCGCATTGcc                                                                                                                     >  2:211365/1‑141 (MQ=255)

                    ggCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTg                                                                                                                   <  1:1177805/141‑1 (MQ=255)

                    ggCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTg                                                                                                                   <  1:682599/141‑1 (MQ=255)

                    ggCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTg                                                                                                                   <  1:47955/141‑1 (MQ=255)

                        ccGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCACTTTATCCATGTTGGGGCCCACACCCCAAAACGCATTGCCTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGGTGCCCACATCTCAACTCGAATTGCCTGTGGa                                                                                                               >  2:1142684/1‑141 (MQ=17)

                          gCCATCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGCAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAAt                                                                                                             <  1:1214423/141‑1 (MQ=255)

                          gCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTCTTCGCACTTCTCTGTGTTGGGGCACACACCCCAACTCGCATTGCCTGTAGAAt                                                                                                             <  2:1146853/141‑1 (MQ=255)

                              aCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTCGAACCCCAAAGATTAACTCGCATTGCCTGTAGAAATCCATGTCTAAAGTCACGTGGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATATCt                                                                                                         >  2:1318164/1‑141 (MQ=16)

                              aCTTGCATTGTCTGTAGAAATTGGAAACATAATTGCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCt                                                                                                         >  1:657407/1‑141 (MQ=18)

                                  tctgtcgcTGTAGTAATTTGGCTTCCATTTTCTCTATGTTGTGGCCCACACCCCAACTCGCTTTGCCTGTAGAATTTCTTTTCGAATTTCTCTGTGTTGGGGCCCACACCCCATCTCGCATTGCATGTAGAATTTCTTTTc                                                                                                     <  2:797766/134‑1 (MQ=18)

                                  gCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCATGTAGAATTTCTTTTc                                                                                                     <  1:678763/141‑1 (MQ=255)

                                    aTTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGAATCTTCTCTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGa                                                                                                   <  1:996736/141‑1 (MQ=21)

                                       gTCTGTAGAAATTGGGAATCCAATTCCTCTATGTCGGGGCCCACACCCCACCTCGCATTGCCTGTACCCTATTTTTTCGAAATTCTCTTTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAAt                                                                                                <  1:1354200/141‑1 (MQ=21)

                                        tCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATGGCCTGTAGACTTTCTTTTCGAAAtt                                                                                               <  1:683884/141‑1 (MQ=255)

                                        tCTGTAGAAATTGGGAAGCCAATTTCTCTATGTTGGGGCCCACCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAAtt                                                                                               <  1:191551/141‑1 (MQ=255)

                                          tGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAAttgc                                                                                             >  1:241807/1‑139 (MQ=255)

                                          tGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTTGAATTGCTGTTCGAAAttat                                                                                             >  2:716627/1‑139 (MQ=255)

                                          tGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGCATTTCTTTTCGAAATtcc                                                                                             >  2:195965/1‑140 (MQ=255)

                                          tGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTGTCGAAATtct                                                                                             >  1:1214834/1‑141 (MQ=255)

                                          tGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCCGTAGAATTTCTTTTCGAAATtcc                                                                                             >  2:398848/1‑140 (MQ=255)

                                          tGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAAGTCTCTGTGTTGGGGCCCACAACCCAACTCGCATTGCCTGTAGGATTGCTTTTCGAAGttac                                                                                             >  2:339678/1‑139 (MQ=18)

                                           gTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATtctc                                                                                            >  1:982889/1‑141 (MQ=255)

                                             aGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGCATTTCTTTTCGAAATTCTCtg                                                                                          >  1:1345972/1‑141 (MQ=255)

                                                    gggAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGTGCCCACACCCCAACTCGCATTGCATGTAGAATTTATATTAGAAATTCCCTTTGtttcg                                                                                   >  2:1352255/1‑138 (MQ=18)

                                                    gggAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACACCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTATCTGTGTTggg                                                                                   >  2:399242/1‑141 (MQ=255)

                                                     ggAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTTCCTGTAGAATTTCTTTTCGAAATTCCCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTCCGAAATTCTCTGTGTTgggg                                                                                  >  2:657498/1‑141 (MQ=255)

                                                     ggAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTgggg                                                                                  >  1:1082310/1‑141 (MQ=255)

                                                     ggAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTAtttgtg                                                                                  >  2:477504/1‑137 (MQ=255)

                                                     ggAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCACATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTgggg                                                                                  >  2:1343661/1‑141 (MQ=255)

                                                       aaTCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGcc                                                                                >  1:916629/1‑141 (MQ=255)

                                                       aaTCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGACTGTTGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACAGCCCAACTGGCATTGCCTGTAGATTTTCTTTTCGAACTTCTCTGTCTTggggtc                                                                                >  2:544518/1‑139 (MQ=21)

                                                          ccAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAACTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCt                                                                             <  1:656223/141‑1 (MQ=255)

                                                             ttttCTCTAGTTTGGTGCTCACCCCCCAACTCTCATTTCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAc                                                                          <  1:617394/140‑1 (MQ=21)

                                                             aTTTCGCTATGTTGGGGCCCACCCCCCAACTCGCCTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAc                                                                          <  1:1095237/141‑1 (MQ=255)

                                                                tttttATGTTGGGGCCCACACCCCAACTCGCTTTGCGTGTAGAATTTCTTTACGAATTTCTCTGCGTTGGGGCCCACCCCCCAACTCGCATTGCTTGTCTAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTag                                                                       <  2:346587/137‑1 (MQ=21)

                                                                  tctATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTagag                                                                     <  1:414402/141‑1 (MQ=255)

                                                                    tATGTTGGTGGCCACACCCCAACGCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCTACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGtt                                                                   <  2:1220550/141‑1 (MQ=255)

                                                                           gggCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGaaaaaa                                                            >  1:854212/1‑141 (MQ=255)

                                                                            ggCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAACTTCCCTGTTTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAg                                                           >  1:717241/1‑141 (MQ=255)

                                                                             gCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGc                                                          >  1:1028508/1‑141 (MQ=255)

                                                                             gCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGc                                                          >  1:148980/1‑141 (MQ=255)

                                                                              ccccccccccAACTCGCATTGCCCGTAGCATTTCCTTACCAAATGCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTATAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCt                                                         <  1:1142283/135‑1 (MQ=17)

                                                                               gtgggccccAACTCGCCTTGCCTGTAGAATTTCTTTTCCAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAGTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCtt                                                        >  1:761468/6‑141 (MQ=255)

                                                                               gtgggccccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCTCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCtt                                                        >  1:820617/6‑141 (MQ=255)

                                                                               gtgggccccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTATGTGTTTGGGCCCCTGACTAGAATTGAAAAAAGCtt                                                        >  1:185081/6‑141 (MQ=255)

                                                                                 cccccccATCTCGCATTGCCTGGAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGACCTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCttgt                                                      <  1:456091/138‑1 (MQ=18)

                                                                                 cccccccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATCCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCttgt                                                      <  1:585452/138‑1 (MQ=255)

                                                                                 ccacCCCACCTCGCATTGCCTGTAGAATTTCTGTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCttgt                                                      <  2:314405/140‑1 (MQ=255)

                                                                                 ccacCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCttgt                                                      <  2:1268038/140‑1 (MQ=255)

                                                                                 ccacCCCAACTCGCATGTCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTCGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCttgt                                                      <  1:310735/140‑1 (MQ=255)

                                                                                   acCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACTCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGAtggttg                                                    >  2:358351/1‑141 (MQ=255)

                                                                                       cAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCGTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAg                                                <  2:79897/141‑1 (MQ=255)

                                                                                            cGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTTTAGAATTTCTTTACGAACTTCTCTGTATCGGCGCCACTGACTAGAGTTGAAAAAACCTTGTGCCGAgcgcgt                                           >  2:412562/1‑139 (MQ=18)

                                                                                            cGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCACAACTCGAAATGACTGTAGAATTTGTTTTCGAAAATCTCTGTGTTGAGGCCCCTGACTAGATTTGCAAAAAGCTTGTTGGAAGCGCAt                                           >  2:731751/1‑141 (MQ=25)

                                                                                              cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCTCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAttt                                         <  2:657407/141‑1 (MQ=255)

                                                                                              cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCGTGACTAGAGTTGAAAAAAGCTTGTTGCCAGCGCAttt                                         >  2:65185/1‑141 (MQ=255)

                                                                                              cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAttt                                         >  1:1038547/1‑141 (MQ=255)

                                                                                                 tGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTttca                                      <  2:471928/141‑1 (MQ=255)

                                                                                                 tGCCAGTAGAATCTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTttca                                      <  2:242646/141‑1 (MQ=255)

                                                                                                        tgtaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTc                               <  2:989813/138‑1 (MQ=255)

                                                                                                         gAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCa                              <  2:665812/141‑1 (MQ=255)

                                                                                                         gAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGGTGAAAAAAGCTTGTTGCAACCGCATTTTTATTCAGTCa                              >  1:340161/1‑141 (MQ=255)

                                                                                                          aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCaa                             <  2:699377/141‑1 (MQ=255)

                                                                                                            tgtCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAact                           <  2:754/139‑1 (MQ=255)

                                                                                                             tgcTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAacta                          <  1:487075/139‑1 (MQ=255)

                                                                                                              tCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactac                         <  1:216862/141‑1 (MQ=255)

                                                                                                               tttttCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactact                        <  2:244656/140‑1 (MQ=255)

                                                                                                               cTTTTCGATACTTCCTGTGTGGGCGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactact                        <  1:1099572/141‑1 (MQ=14)

                                                                                                               cTTTTCGAAATTCTCTGTGTTGGGGCCCCCTCCCCAACTCGCATTGCCTGTACAATTCCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactact                        <  1:1367976/141‑1 (MQ=255)

                                                                                                               cTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTCCATTCAGTCAactact                        <  1:676946/141‑1 (MQ=255)

                                                                                                               cTTTCCCAAATTCTCCGTGTTGGGGCTCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactact                        <  1:73528/141‑1 (MQ=255)

                                                                                                               cTTCTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactact                        <  2:692857/141‑1 (MQ=255)

                                                                                                                ttttCCAAACTCTTTGTGTTTGGGCGCACACCCCAACGCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAActacta                       <  2:939313/141‑1 (MQ=14)

                                                                                                                    cGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaa                   <  2:106304/141‑1 (MQ=255)

                                                                                                                    cGAAATTCTCTGGGTTGGGGCCCACACCCCAACTCGCTTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaa                   <  1:218336/141‑1 (MQ=255)

                                                                                                                     gAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaat                  <  2:276681/141‑1 (MQ=255)

                                                                                                                       aaTTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTGAACTACTAGCaataa                >  1:601642/1‑140 (MQ=255)

                                                                                                                         ttCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatataa              >  1:519640/1‑141 (MQ=255)

                                                                                                                         ttCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatataa              >  1:912182/1‑141 (MQ=255)

                                                                                                                             ctGTGTTGGGGGCCTCACCCCCACCCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatt          <  1:469462/141‑1 (MQ=255)

                                                                                                                             ctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatt          <  2:568387/141‑1 (MQ=255)

                                                                                                                             ctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatt          <  1:781430/141‑1 (MQ=255)

                                                                                                                             ctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatt          >  1:1040965/1‑141 (MQ=255)

                                                                                                                             ctGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGGTGCAAACGCATTTTCATTCATTCAACTACTAGCAATATAAtatt          >  1:790473/1‑141 (MQ=255)

                                                                                                                                tgtTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATtata       >  1:1040441/1‑141 (MQ=255)

                                                                                                                                     gggCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGAccc  >  1:624366/1‑141 (MQ=255)

TTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCC  >  USA300TCH1516_ALE/848442‑848715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.