BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 848580	114 (0.940)	5 (0.050) +CTGAAAAAAAAAAA	3/252	8.9	3.6%	intergenic (+585/‑295)	trxB/USA300HOU_RS04145	Thioredoxin reductase/Nucleotide‑binding protein
*	?	USA300TCH1516_ALE	2665075 =	182 (1.500)	5 (0.050) +CTGAAAAAAAAAAA	3/252	8.9	3.6%	intergenic (+310/+128)	pitA_2/USA300TCH1516_02535	L‑methionine sulfoximine/L‑methionine sulfone acetyltransferase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 184 total aligned reads displayed.

TAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCATAGCTTTGATTTAACGCTTTTTC  >  USA300TCH1516_ALE/2664937‑2665215

tAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCaaa                                                                                                                                            >  1:391597/1‑141 (MQ=255)

tAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCaaa                                                                                                                                            >  1:1376643/1‑141 (MQ=255)

tAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTCTTGGGGCCCaaa                                                                                                                                            >  2:209223/1‑141 (MQ=255)

  aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAGAAGTATTTCTTTATCGTCGTCCCACCCCATCTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCaaaaa                                                                                                                                          >  1:91735/1‑141 (MQ=255)

  aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCGCaaaaa                                                                                                                                          >  2:1282677/1‑141 (MQ=255)

  aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCaaaaa                                                                                                                                          >  1:551219/1‑141 (MQ=255)

  aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCAAACGCGCACATTATT‑GTAAGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCcaaaa                                                                                                                                          >  2:503341/1‑141 (MQ=255)

    aaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGc                                                                                                                                        <  2:993386/141‑1 (MQ=255)

    aaTAGGAATACAAGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAACAAGTATTTCTTTATCGTCGTCCCTCCTCAACTCGCACATTATT‑GTAAGCTAACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGc                                                                                                                                        <  1:602947/141‑1 (MQ=17)

     aTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCt                                                                                                                                       >  2:1110351/1‑141 (MQ=255)

     aTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCt                                                                                                                                       <  1:276747/141‑1 (MQ=255)

       aGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTg                                                                                                                                     >  2:139511/1‑141 (MQ=255)

        ggAATACCTGAGCAAAACTCATGCATAAGAAATACTAATTCCTATAGAAAAAGTATTTCTTTATCATCATCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGCCCCAAAAAGCTTGt                                                                                                                                    >  2:663918/1‑141 (MQ=17)

                 gagaAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  2:26742/141‑1 (MQ=255)

                 gAGTAAAACTCATGCTTAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  2:795583/141‑1 (MQ=255)

                 gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  2:214193/141‑1 (MQ=255)

                 gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  2:1197635/141‑1 (MQ=255)

                 gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  1:607581/141‑1 (MQ=255)

                 gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  1:505787/141‑1 (MQ=255)

                 gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  2:1026901/141‑1 (MQ=255)

                 gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  1:230145/141‑1 (MQ=255)

                 gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGCCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  2:755761/141‑1 (MQ=255)

                 gAGTAAAACCCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTAGT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACCAgcgc                                                                                                                           <  2:1189165/141‑1 (MQ=255)

                 aaGTAAAACTCAGGCATAAGAAAAACTAATTTCTAGAGAAAAAGTATTTCGTTAGCGTCCTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgcgc                                                                                                                           <  2:705256/140‑1 (MQ=18)

                       taCTCATGTATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTc                                                                                                                     >  1:633340/2‑141 (MQ=255)

                        aCTCATGCATAAGAAATACTAGTTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCg                                                                                                                    >  1:1265347/1‑141 (MQ=255)

                        aCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCg                                                                                                                    >  1:1147165/1‑141 (MQ=255)

                         cttaTGCATAGGAAATCCTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                   <  2:1204018/138‑1 (MQ=255)

                         cTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                   <  2:470485/141‑1 (MQ=255)

                          tCATGCATAAGAAATAATAATTACATTTGTAAAAGTATTTCTTTATCTTCGTCCCACCCCAACGAGGACATTATT‑GTAAGCTGACTTTTCTTCAGCTTCTGTGTTGGGGACGAAAAAGCTTGTTACAGTAGCATTTTGGtt                                                                                                                  >  2:8190/1‑141 (MQ=17)

                           cATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATAATCGTACCACCGCAAGTTGATCATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTCCAAGCGCATTTTCGttt                                                                                                                 >  2:490309/1‑140 (MQ=18)

                            aTGCATACGAAACACTAAGTTCTATAGAAAATGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTCTGCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCa                                                                                                                <  2:84084/141‑1 (MQ=21)

                               cATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                                                                                             >  1:93401/1‑141 (MQ=255)

                               cATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                                                                                             >  2:409239/1‑141 (MQ=255)

                                             aTTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCAACCCAACTCGCACATTATT‑GTACGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaaga                                                                                               >  1:215435/1‑139 (MQ=255)

                                                tCTATAGAAAAAGTATTTCTTCATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATaa                                                                                            <  1:581426/141‑1 (MQ=255)

                                                 cTATAGAAAAAGTATTTCTTCATCGTCGTCCCACACCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc                                                                                           <  1:1226746/141‑1 (MQ=255)

                                                  tataGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTCACAACCTGGC‑TTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt                                                                                          <  1:1348240/141‑1 (MQ=37)

                                                   ataGAAAACGTATTTCTTTATCGTCGTCCCACCCCGACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAACAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt                                                                                         <  1:819260/141‑1 (MQ=255)

                                                   ataGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt                                                                                         <  1:80819/141‑1 (MQ=255)

                                                    taGAAAAATTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACttt                                                                                        <  2:551195/141‑1 (MQ=255)

                                                     aGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTg                                                                                       >  1:454559/1‑141 (MQ=255)

                                                         aaaGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTaga                                                                                   <  1:678083/141‑1 (MQ=255)

                                                              agcgcTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCatt                                                                              >  2:687105/5‑140 (MQ=255)

                                                              aTTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCata                                                                              >  1:484713/1‑141 (MQ=255)

                                                              aTTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCata                                                                              >  1:382931/1‑141 (MQ=255)

                                                              aTTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAAATACTGCCAATAGAAATTTGTAGAGGata                                                                              >  1:431795/1‑141 (MQ=255)

                                                               tttCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTATTCGTCAGCATCTGTGTTGGGGTCCAAAAAGCTTGTTACAAGAGCATTTTCGTTCAGTCAACTACTGCCAATACAACTTTGTAGAGCctat                                                                             >  2:103310/1‑141 (MQ=37)

                                                                  cTTTATCGTCGTCCCACCCCAACTCGCACATTCTT‑GTAATCTGACTTTTCGTCCGCTCCTCTTTAGTGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTAc                                                                          >  2:620191/1‑141 (MQ=21)

                                                                  cTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTCCTGCCAATATAACTTTGTAGAGCATATTAc                                                                          >  1:969113/1‑141 (MQ=255)

                                                                  cTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCGTCTTAc                                                                          >  1:342440/1‑141 (MQ=255)

                                                                  cTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTAc                                                                          >  1:1320909/1‑141 (MQ=255)

                                                                  cTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTAc                                                                          >  2:308101/1‑141 (MQ=255)

                                                                  cTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTAc                                                                          >  1:1187232/1‑141 (MQ=255)

                                                                   tttATCGTCGTCCTACCCCAACTCGGATATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAATGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTGTGTAGAGTATATTACa                                                                         <  2:434832/141‑1 (MQ=37)

                                                                   tttATCGTCGTCCCCCCCCAACTCGCACATTATT‑GTAAGCTGACTTCTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTTGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACa                                                                         <  2:749934/141‑1 (MQ=255)

                                                                   tttATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACa                                                                         <  2:1070912/141‑1 (MQ=255)

                                                                   tttATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACa                                                                         <  2:492598/141‑1 (MQ=255)

                                                                     tATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTTGGGCCCAAAAACCTTGTTACAAGCGCATTTTCCTTAAGTCAACGACTGCCAATATAACTTTGTAGAGAATAttcaatt                                                                       >  2:254393/1‑136 (MQ=37)

                                                                      aTCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTg                                                                      <  2:1257785/141‑1 (MQ=255)

                                                                        cgtcgtCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGAGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGAt                                                                    >  2:638256/1‑141 (MQ=255)

                                                                        cgtcgtCCCACCCCAACTCATAACTAATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGAt                                                                    >  2:294207/1‑141 (MQ=25)

                                                                               ccACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACAtt                                                             >  1:943050/1‑141 (MQ=255)

                                                                                cACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTGTGTAGAGCATATTACATTGATTTACATTg                                                            >  1:730444/1‑141 (MQ=255)

                                                                                  ccccAACTCGCACGTTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTc                                                          >  2:1362704/1‑141 (MQ=255)

                                                                                  ccccAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCAAATTACATTGATTTACATTGTc                                                          >  2:1330782/1‑141 (MQ=255)

                                                                                      aaCTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCACACAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTAATTTACATTGTCCCtt                                                      >  1:650974/1‑141 (MQ=255)

                                                                                           gCACATTATT‑TTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTtttatt                                                 <  1:333147/141‑1 (MQ=255)

                                                                                           ccacaTTATC‑GTCAGCTGACTTTTCGTCAGCTTCTGTGTTGCGGCCCCAATGGCTTTTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTtttatt                                                 <  1:1208045/140‑1 (MQ=25)

                                                                                            cacgtgatt‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTtttattt                                                <  2:337417/135‑1 (MQ=255)

                                                                                            cacaTTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCAGTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTtttattt                                                <  2:1172698/141‑1 (MQ=255)

                                                                                               attatt‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTtatttatt                                             <  1:669573/141‑1 (MQ=255)

                                                                                                ttatt‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTc                                            <  2:1265347/141‑1 (MQ=255)

                                                                                                   tt‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGTTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCttt                                         >  1:563783/1‑141 (MQ=255)

                                                                                                   tt‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCttt                                         <  2:633340/141‑1 (MQ=255)

                                                                                                   tt‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATGTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTCTTCttt                                         >  1:76696/1‑141 (MQ=255)

                                                                                                   tt‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTCGCGATCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCTTATTACATTGATTTACATGGTCCCTTTTATTTATTCttt                                         >  1:1141653/1‑141 (MQ=37)

                                                                                                    t‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTTTCCCTTTTATTTATTCtttt                                        >  1:1048880/1‑141 (MQ=255)

                                                                                                       tAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCa                                      <  2:943050/141‑1 (MQ=255)

                                                                                                          tcTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAAt                                   <  2:1158826/140‑1 (MQ=255)

                                                                                                          tcTGACTTTTCGTCAGCTTCGGTGTTGGTGCCCAAAATGCTTGTTACCTGCGCATTTTCGTTCAGTCAACTACTGCCAACATATCTTTTTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAAt                                   <  2:361490/140‑1 (MQ=37)

                                                                                                          gcagACTTTTCGTCAGCTTCCGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGAACCTTTGATTTATTCTTTTCAAAt                                   <  2:491962/138‑1 (MQ=25)

                                                                                                          gCTGACTTTTCGTCAGCTTCTGTGTTTGAGCCCAAAAACCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATAGATTTACACTGACCCTTCTATTTATTCTTTTCAAAt                                   >  2:560480/1‑141 (MQ=25)

                                                                                                          gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTAGTGCCAATTTATCTTTGTAGACCATATTATATTTATTTACATTGTCCCTTTTATTTGTTCTTTTCatat                                   <  2:391597/141‑1 (MQ=25)

                                                                                                          gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTTTCCCTTTTATTTATTCTTTTCTAAt                                   >  1:860408/1‑141 (MQ=255)

                                                                                                          gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAAt                                   >  1:1063832/1‑141 (MQ=255)

                                                                                                          gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAAt                                   <  2:1139816/141‑1 (MQ=255)

                                                                                                          gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAAt                                   >  1:1230597/1‑141 (MQ=255)

                                                                                                          gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTAAAAt                                   >  1:288276/1‑141 (MQ=255)

                                                                                                              aCTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTa                               <  2:1185508/141‑1 (MQ=255)

                                                                                                                    cGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCa                         >  1:1073021/1‑141 (MQ=255)

                                                                                                                    cGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCa                         >  1:1110964/1‑141 (MQ=255)

                                                                                                                       cAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCTAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCATAg                      <  1:920964/141‑1 (MQ=255)

                                                                                                                                 gtTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCGAATACTATCCCCATAGCTTTGATTTa            >  1:824894/1‑141 (MQ=255)

                                                                                                                                  ttGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCATAGCTTTGATTTaa           <  1:556224/141‑1 (MQ=255)

                                                                                                                                   tGGGGCCCAACAAGCTTGTTACCAGCGCATTTTCGTTCAGTCAACTCCTGCCAATACAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTCCCCCCATAGCTTTGATTTAAc          <  1:103310/141‑1 (MQ=37)

                                                                                                                                   tGGGGCCCAAAAAGCTTGTTACCAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCATAGCTTTGATTTAAc          <  2:438370/141‑1 (MQ=255)

                                                                                                                                         ccAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCATAGCTTTGATTTAACGCtttt    <  1:4221/141‑1 (MQ=255)

                                                                                                                                         ccAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCATAGCTATGATTTAACGCtttt    <  1:1017965/141‑1 (MQ=255)

                                                                                                                                           aaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCATAGCTTTGATTTAACGCTTTTtc  <  2:519009/141‑1 (MQ=255)

TAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATT‑GTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATATTACATTGATTTACATTGTCCCTTTTATTTATTCTTTTCAAATACTATCCCCATAGCTTTGATTTAACGCTTTTTC  >  USA300TCH1516_ALE/2664937‑2665215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.