| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1999809 | NA (NA) | 7 (0.060) | 3/268 | 9.3 | NA | intergenic (‑1537/+1798) | USA300TCH1516_01882/USA300TCH1516_01883 | tRNA‑Val/tRNA‑Ala |
| ? | USA300TCH1516_ALE | = 2177978 | NA (NA) | intergenic (+1740/+3555) | ilvA/USA300TCH1516_02069 | L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 130 total aligned reads displayed.
CGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATCGATTAAAACGATTATAG > USA300TCH1516_ALE/1999677‑1999949 | cgggTTCCTTACCGAGAGTTCGTCCGCTCAGCTTAGCATTCTCCTCTTGAGGGCGTGTGTCGTTTTGCGGTACGGGCACCGATTGTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGtc < 2:673291/138‑1 (MQ=11) caGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATGCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGtct < 2:98972/140‑1 (MQ=17) gTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGtcttc < 1:1018953/141‑1 (MQ=32) ttCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCGCCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGtattct > 1:619930/1‑141 (MQ=17) tAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTccccc > 1:1257502/1‑140 (MQ=17) aaCGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTGGAGGCTTTTCTCGGCAGCGTGAAATCAACGACTCGACGGCTCAATGTCTTccccccct > 2:469664/1‑139 (MQ=11) aaCGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCAt > 1:268586/1‑141 (MQ=32) gagaGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATcac < 1:797017/141‑1 (MQ=32) gagTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAg > 1:1367727/1‑141 (MQ=32) tcgctcgcTCACCTTAGCATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACGCGAAGACTCAATGTCTTCTCCCCATCACAGCTCa > 2:923413/1‑141 (MQ=17) tcgctcgcTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCTAAAACTCAATGTCTGATCCCCATCACAGCGCa > 2:1095617/1‑141 (MQ=11) tcgctcgcTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGCCTCAATGTCTTCTCCCCATCCCAGCTCa > 1:79468/1‑141 (MQ=17) tcgctcgcTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGCCTCAATGCCTTCCCCCCATCTCAGCTcc > 2:1195427/1‑140 (MQ=255) tcgctcgcTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCa > 1:311995/1‑141 (MQ=32) tcgcaTTCTCATCTTGACTACCTGGGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTAc < 2:20940/137‑1 (MQ=17) tAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTAc < 2:810095/141‑1 (MQ=32) tAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTAc < 1:680586/141‑1 (MQ=32) tAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTAc < 1:1059297/141‑1 (MQ=32) tAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGACTTAACGATTAc < 2:1186000/141‑1 (MQ=17) tgAATTGTCATCTTGACTACCTGTGTCGGTGTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTAcc < 2:436438/140‑1 (MQ=17) aggaTTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCGCGGCAGTGTGAACTCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTAcc < 2:485928/138‑1 (MQ=12) aGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACCGCTCAGCCTTAACGAGTAcc > 2:630185/1‑141 (MQ=17) aGAATTCTCATCTTGACTACCTGTGTCGGTTCGCGGTCCGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTAcc < 2:8679/141‑1 (MQ=17) aGAATCCTCACCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTGcc > 2:630350/1‑141 (MQ=12) aGAATCCCCATCTTCACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTGCTCCCCATCACAGCTCAGCCTTAACGAGTAcc < 2:1143646/141‑1 (MQ=255) aaTTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCgg > 2:1192165/1‑141 (MQ=32) aTTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCCATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTAAGCCTTACCGCGtccagtg < 1:663007/141‑7 (MQ=11) ttCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGGGTACCGGAt > 2:1281684/1‑141 (MQ=17) tctcATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGAtt < 1:1323169/141‑1 (MQ=32) tctcATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGAtt < 1:1263557/141‑1 (MQ=32) tctcATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGAtt < 1:649864/141‑1 (MQ=32) cATCTTGCCTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGc < 2:300257/141‑1 (MQ=17) tCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTCTCTAGCGGATTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCCCAGCTCAGCCTTAACGAGTTCCGGATTTGccg > 1:380330/1‑140 (MQ=11) tCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCCCAGCTCAGCCTTACAGAGTACCGGATTTGcgt > 1:441858/1‑139 (MQ=12) tCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCt < 1:361632/141‑1 (MQ=32) tCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCt > 2:1164325/1‑141 (MQ=32) tCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCt > 1:1178519/1‑141 (MQ=32) tCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCt < 1:126759/141‑1 (MQ=32) cTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACt < 1:1164325/141‑1 (MQ=32) ccTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAg < 1:1134115/141‑1 (MQ=32) ccTGTGTCGGTTCGCGGTACGGGCACCCATTTTCCATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAACGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAg < 1:1068138/141‑1 (MQ=255) cTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGc > 2:1254855/1‑141 (MQ=32) tgtgTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGcc < 1:62251/141‑1 (MQ=32) tgtCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCtt > 1:243692/1‑141 (MQ=32) tCGGTTTGCCGGTCGGGCACCTATTTTCTATCTAGAGGCTTTCCTCGCCAGTGTGAAATCAACGACTCGAAGACTCAATGTCCTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTTCCTAATACTCAGCCTTAc < 2:811769/141‑1 (MQ=11) cGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGa < 2:954641/141‑1 (MQ=32) cGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGa < 1:973472/141‑1 (MQ=32) cGGTACGGGCACCTACTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGa < 1:294225/141‑1 (MQ=17) ggTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGAc > 2:343214/1‑141 (MQ=32) ggTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGAATCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGAc > 2:202734/1‑141 (MQ=17) aCGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGCGTACCGGATTTGCCTAATACTCCGCCTTACTGATTAGCCGTg > 2:336278/1‑141 (MQ=255) aCGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGCTTTGCCTAATACGCAGCCTTACGGCTTACACGta > 2:2952/1‑140 (MQ=255) aCGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAGTACTCAGCCTTACTGCTTAGACGTg > 1:285488/1‑141 (MQ=17) aCGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGAATTGCCTAAAACTCTGCCTTTCTGCTCAGACGtc > 1:404213/1‑140 (MQ=11) ggggAACCTATTTCCTATCTGGAGGCTTTTCTCGGGAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGc < 1:89537/140‑1 (MQ=255) cGGGCACTTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGc < 1:1089367/141‑1 (MQ=17) cGGGCACCTCTTTTCAATCTTGAGGTTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTCGACGTGc < 1:853220/141‑1 (MQ=11) cGGGCACCTATTTTCTATCTGGCGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGc < 1:1023863/141‑1 (MQ=17) cGGGCACCTATTTTCTATCTAGGGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGc < 2:952553/141‑1 (MQ=17) cGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGc < 1:1345359/141‑1 (MQ=32) gggCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGATTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGca < 2:1042887/141‑1 (MQ=17) gggCACCTATTTTCTATCTAGAGGCTTTTCCCGGCAGTGTGAAATCCACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGca < 2:412459/141‑1 (MQ=17) ggCACATCTTTTAAATCTAGAGGCTTTTCTCGGCAGGGTGAAATAAACGAAACTTGTGATGTGTGTTTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTCATACTCAGCCTTACTGCTTAGACGTGcaa > 2:620313/1‑141 (MQ=2) gCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGcaac > 1:107373/1‑140 (MQ=17) cACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTAAATGTATTATCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACCGCTTAGACGTGcgatc > 2:100081/1‑141 (MQ=11) ccTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCCCAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCCGCCTTACCGCTTAGCCCTGcaatcca > 2:186608/1‑141 (MQ=11) ccTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGcaatcca > 1:765768/1‑141 (MQ=32) ttttCTGTCTAGGGGCTTTTCTCGGCAGTGTGAAATCAGCGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCg < 2:88438/141‑1 (MQ=12) tttCTATCTAGGGGGTTTTCTCGCCAGTGGGAAATCAACCACTGGAAGACTCAATGTCCTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGc < 2:56754/141‑1 (MQ=11) tttCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGCTTTGACTAATAGTCAGCCGTACTGATTGAGCGTGCAATGCAATCgg > 1:344967/1‑140 (MQ=11) tttCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGc < 1:188327/141‑1 (MQ=32) tttCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGc < 1:1276320/141‑1 (MQ=32) tttCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGc < 1:1096128/141‑1 (MQ=32) ttCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTCGACGTGCAATCCAATCGCa < 1:746494/141‑1 (MQ=17) ttCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCa > 2:1066512/1‑141 (MQ=32) ttCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGGGCAATCCAATCGCa < 1:894878/141‑1 (MQ=17) ctatctaGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTTGAAAACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAAGCCAATCCCAcc > 2:585965/1‑140 (MQ=255) tctaGAGGCTTTTCTCGGCAGTGTGAAATCAACCACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCCGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCtt < 2:1003749/141‑1 (MQ=17) tccagagGCCTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCtt < 2:1367752/138‑1 (MQ=17) taGAGGCTTATCACGGCAATGTGAAATCAACGACTCGAAGACTCAATGTATTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGGCGTGCAATCCAATCGCACGCtgcc > 2:1263812/1‑138 (MQ=11) ttttCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTACCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATcc > 2:883412/1‑141 (MQ=17) ctcGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATcctcct > 1:312124/1‑141 (MQ=17) ctcGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGGGCAATCCAATCGCCGGCTTCGCCTATCCTACt > 2:1107871/1‑141 (MQ=12) gtgAAATCAACGACTCGAAGACTCAATGTCTTCTCCCGATCACAGCTCAGCCTTAACGCGTACCGGATTTGCCTAATACTCAGCCTTACTGGTTAGACGTGCAATCCGACCGCACGCTTCGCCTATCCTACTGCGTccccc > 1:479455/1‑141 (MQ=11) gtgAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTAACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTccccc > 1:851220/1‑141 (MQ=17) tgAAATCAACGACTCGAAGACTCGATGGCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTcccccc > 2:979187/1‑141 (MQ=17) tgAAATCAACGACTCGAAGACTCACTGTCTTCTCACCATCACAGCTCAGCCTTAACGAGTACCGGATTTGACTAATACACAGCCTTCCTCCTTAGACGTGCAATCCAATCGCACGCGTCGCCTATCCTACTGCGGcccccc > 2:671788/1‑141 (MQ=11) tgAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTcccccc > 1:604673/1‑141 (MQ=32) tgAAATCAACGACTCGAAGACTAAATGTCTTCGCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTACCTATGGGTGCAATACCCTCGCACGCTGCGCCTATCCTACTGCGTctcccc > 1:516358/1‑141 (MQ=11) aaTCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCCGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATc < 1:570369/141‑1 (MQ=17) tCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATCGa < 2:252232/141‑1 (MQ=32) tCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACCAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATCGa < 2:252233/141‑1 (MQ=17) cacgtcccGAACACTCAATGCCTGCTCCCCATCACGGCTCTGCCTGAACGAGCGCCGGATATGCCTAATGCTCAGCCTTACTGCTTACACGTGCAATCCAATCGCACGTTGCGCCTATACTACTCCGCCCCCCAATCGAtt < 2:976366/134‑1 (MQ=2) aCGACTCGAAGACTCAATGTCTTCTCCCCCTCACAGCCCAGCCTGAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTCTTCTACTGCGTCCCCCCATCGATTa < 2:88858/141‑1 (MQ=11) cTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTGGCCTATCCTACCACGTCCCCCCATCGATAAAAAc > 2:701545/1‑141 (MQ=255) cTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATCGATTaaacc > 2:233353/1‑139 (MQ=17) cTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATCGATTAAAAc > 2:1303798/1‑141 (MQ=32) aaGACTCAATGTCTTCTGCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATCGATTAAAACGAtt < 2:311995/141‑1 (MQ=17) cTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCACTCCCATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATCGATTAAAACGATTATAg < 2:1028009/141‑1 (MQ=14) cTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGGACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATGCTACTGCGTCCCCCCATCGATTAAAACGATTATAg < 2:709089/141‑1 (MQ=14) | CGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTGTGAAATCAACGACTCGAAGACTCAATGTCTTCTCCCCATCACAGCTCAGCCTTAACGAGTACCGGATTTGCCTAATACTCAGCCTTACTGCTTAGACGTGCAATCCAATCGCACGCTTCGCCTATCCTACTGCGTCCCCCCATCGATTAAAACGATTATAG > USA300TCH1516_ALE/1999677‑1999949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |